Gvermi11249.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11249.t1
Unique Name	Gvermi11249.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	593

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_856	contig	ScGOVlb_856:2..1780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15717471
Max annot lvl	33154\|Opisthokonta
Evalue	2.57e-20
EggNOG OGs	2E4DK@1\|root,2SBAH@2759\|Eukaryota,3AD4A@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11249	Gvermi11249	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_856 2..1780 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11249.t1.CDS1	Gvermi11249.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_856 2..1780 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11249.t1.exon1	Gvermi11249.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_856 2..1780 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11249.t1.stop1	Gvermi11249.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_856 1778..1780 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11249.t1	Gvermi11249.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_856 2..1780 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_856:2..1780+
coding sequence from alignment at ScGOVlb_856:2..1780+

mRNA sequence

>Gvermi11249.t1 ID=Gvermi11249.t1|Name=Gvermi11249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=593bp
VIAAESKVVAAKEEVVAAKEEVVAAKEEVVAAKASSDAAAVSTAETLLRL
AVSGLESAHQRVQSAQRGVESAQRGVESAQEMLSALRHSAAQALLTAPSP
DLIVEEQRAQNDKHIFTHGLPPLGPLSDGTRAKSKPSSPTDAKHAKATLI
LANFVNLSDVKSLPCPVTNIWNRLVGNTGHLGGYSNEAGVNEFVKLVMED
VLEAMGVREQVKLRAEVEVMSARPDFTLLYVNGHPIGTIEDKQPGKDAMT
DGNILGEVYDQLMHLHSIFGVDNPFAILTSYEEWRICWLNFERSNEVAAL
KELLNSPAIYTTPVKAQRDDQLADSLQKVHLKEESPEPPATPSRTRDIGC
LQSVDGESEEEEKCFAVDDHKREFCGTEVISWQHKSLPCVLVSVVKKMML
ARVEGEPSVVRVVDASTSVWKAAPKTLRYDLCISKRVKWFCLLEDLGHGA
DGRAFLVSGGTKGAIGVLKFFFEDAEQSAHHEAEMWKAAYSHLPAVSSVR
VVKAMGHTALLMPWFQTPTRNEDTLAAIQSTLQDDFMHRGYRHDDVAWRN
VGVYTDAGQLKAIVFDMKRVSLDANQEDWVTAAVSSLRRKLE*

spliced messenger RNA

>Gvermi11249.t1 ID=Gvermi11249.t1|Name=Gvermi11249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at ScGOVlb_856:2..1780+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GTCATCGCTGCCGAGAGCAAAGTCGTCGCTGCCAAGGAGGAAGTCGTCGC
TGCCAAGGAGGAAGTCGTCGCTGCCAAGGAGGAAGTCGTCGCGGCCAAAG
CAAGTTCAGATGCTGCTGCCGTCAGTACTGCCGAGACGCTACTGCGACTC
GCCGTGTCGGGACTCGAGTCCGCCCATCAACGTGTGCAGTCGGCCCAGCG
AGgagtcgagtcggcccagcgaggagtcgagtcgGCCCAGGAGATGTTGT
CGGCGCTGCGCCACTCGGCGGCCCAAGCGCTGCTCACAGCGCCATCTCCA
GATCTCATTGTGGAGGAGCAGCGAGCCCAGAATGACAAACACATCTTCAC
GCACGGACTTCCGCCGTTGGGACCATTGTCTGATGGCACTCGTGCCAAGT
CCAAGCCGTCGTCGCCGACTGACGCCAAGCATGCCAAGGCCACGTTGATC
CTCGCCAACTTTGTCAATTTGTCTGACGTCAAGTCGCTACCGTGTCCCGT
CACCAACATTTGGAACCGCTTGGTGGGTAACACTGGTCATCTCGGTGGAT
ACTCCAACGAAGCAGGTGTAAACGAGTTTGTCAAATTGGTCATGGAAGAT
GTTCTCGAGGCGATGGGCGTTCGAGAGCAGGTAAAGCTTCGTGCCGAGGT
TGAAGTGATGAGTGCTCGCCCGGACTTTACGCTACTGTATGTGAATGGCC
ATCCCATTGGAACGATCGAAGACAAGCAACCGGGCAAGGACGCCATGACG
GATGGCAACATTCTCGGCGAAGTGTACGACCAACTGATGCATCTGCACAG
CATTTTCGGCGTGGACAACCCGTTTGCCATTCTGACATCCTACGAGGAGT
GGCGCATCTGCTGGCTGAATTTTGAGCGTAGCAACGAGGTCGCGGCTCTT
AAGGAGCTTCTTAACTCGCCTGCGATCTACACCACTCCTGTCAAGGCTCA
GAGAGATGACCAGTTGGCCGATTCTTTGCAAAAGGTGCATTTGAAAGAAG
AGTCTCCTGAGCCACCGGCCACTCCGAGTCGGACTCGAGACATCGGCTGT
TTGCAAAGTGTTGATGGTGAATCGGAGGAAGAAGAGAAATGTTTCGCGGT
TGACGATCACAAACGCGAGTTTTGTGGCACAGAAGTTATTTCGTGGCAGC
ACAAATCGCTTCCGTGCGTGTTGGTGTCGGTGGTGAAGAAGATGATGCTT
GCTCGTGTTGAGGGAGAGCCTTCTGTCGTACGTGTAGTCGATGCATCCAC
CTCTGTTTGGAAAGCGGCCCCAAAGACGCTGCGGTACGATTTGTGCATCT
CCAAGCGCGTGAAGTGGTTCTGTCTACTGGAAGACCTCGGGCATGGCGCT
GACGGCAGAGCGTTTCTAGTGTCCGGTGGTACGAAGGGGGCCATCGGAGT
GTTGAAGTTCTTCTTCGAGGATGCTGAGCAGTCGGCTCACCATGAAGCAG
AGATGTGGAAAGCTGCATACTCGCATCTCCCCGCAGTTTCTTCCGTTCGA
GTCGTGAAGGCCATGGGGCATACAGCGTTGTTGATGCCGTGGTTTCAAAC
TCCCACGCGAAACGAGGACACTCTGGCGGCAATTCAATCGACGCTGCAGG
ACGATTTCATGCACCGAGGTTATCGTCACGATGATGTTGCTTGGCGGAAC
GTGGGCGTCTACACCGACGCGGGGCAACTGAAAGCTATCGTGTTCGACAT
GAAGCGCGTGTCCTTGGACGCCAATCAAGAGGACTGGGTGACGGCTGCTG
TCTCATCTCTCCGCCGCAAGCTCGAGTAA

protein sequence of Gvermi11249.t1

>Gvermi11249.t1 ID=Gvermi11249.t1|Name=Gvermi11249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=593bp
VIAAESKVVAAKEEVVAAKEEVVAAKEEVVAAKASSDAAAVSTAETLLRL
AVSGLESAHQRVQSAQRGVESAQRGVESAQEMLSALRHSAAQALLTAPSP
DLIVEEQRAQNDKHIFTHGLPPLGPLSDGTRAKSKPSSPTDAKHAKATLI
LANFVNLSDVKSLPCPVTNIWNRLVGNTGHLGGYSNEAGVNEFVKLVMED
VLEAMGVREQVKLRAEVEVMSARPDFTLLYVNGHPIGTIEDKQPGKDAMT
DGNILGEVYDQLMHLHSIFGVDNPFAILTSYEEWRICWLNFERSNEVAAL
KELLNSPAIYTTPVKAQRDDQLADSLQKVHLKEESPEPPATPSRTRDIGC
LQSVDGESEEEEKCFAVDDHKREFCGTEVISWQHKSLPCVLVSVVKKMML
ARVEGEPSVVRVVDASTSVWKAAPKTLRYDLCISKRVKWFCLLEDLGHGA
DGRAFLVSGGTKGAIGVLKFFFEDAEQSAHHEAEMWKAAYSHLPAVSSVR
VVKAMGHTALLMPWFQTPTRNEDTLAAIQSTLQDDFMHRGYRHDDVAWRN
VGVYTDAGQLKAIVFDMKRVSLDANQEDWVTAAVSSLRRKLE*

mRNA from alignment at ScGOVlb_856:2..1780+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11249.t1 ID=Gvermi11249.t1|Name=Gvermi11249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at ScGOVlb_856:2..1780+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GTCATCGCTGCCGAGAGCAAAGTCGTCGCTGCCAAGGAGGAAGTCGTCGC
TGCCAAGGAGGAAGTCGTCGCTGCCAAGGAGGAAGTCGTCGCGGCCAAAG
CAAGTTCAGATGCTGCTGCCGTCAGTACTGCCGAGACGCTACTGCGACTC
GCCGTGTCGGGACTCGAGTCCGCCCATCAACGTGTGCAGTCGGCCCAGCG
AGgagtcgagtcggcccagcgaggagtcgagtcgGCCCAGGAGATGTTGT
CGGCGCTGCGCCACTCGGCGGCCCAAGCGCTGCTCACAGCGCCATCTCCA
GATCTCATTGTGGAGGAGCAGCGAGCCCAGAATGACAAACACATCTTCAC
GCACGGACTTCCGCCGTTGGGACCATTGTCTGATGGCACTCGTGCCAAGT
CCAAGCCGTCGTCGCCGACTGACGCCAAGCATGCCAAGGCCACGTTGATC
CTCGCCAACTTTGTCAATTTGTCTGACGTCAAGTCGCTACCGTGTCCCGT
CACCAACATTTGGAACCGCTTGGTGGGTAACACTGGTCATCTCGGTGGAT
ACTCCAACGAAGCAGGTGTAAACGAGTTTGTCAAATTGGTCATGGAAGAT
GTTCTCGAGGCGATGGGCGTTCGAGAGCAGGTAAAGCTTCGTGCCGAGGT
TGAAGTGATGAGTGCTCGCCCGGACTTTACGCTACTGTATGTGAATGGCC
ATCCCATTGGAACGATCGAAGACAAGCAACCGGGCAAGGACGCCATGACG
GATGGCAACATTCTCGGCGAAGTGTACGACCAACTGATGCATCTGCACAG
CATTTTCGGCGTGGACAACCCGTTTGCCATTCTGACATCCTACGAGGAGT
GGCGCATCTGCTGGCTGAATTTTGAGCGTAGCAACGAGGTCGCGGCTCTT
AAGGAGCTTCTTAACTCGCCTGCGATCTACACCACTCCTGTCAAGGCTCA
GAGAGATGACCAGTTGGCCGATTCTTTGCAAAAGGTGCATTTGAAAGAAG
AGTCTCCTGAGCCACCGGCCACTCCGAGTCGGACTCGAGACATCGGCTGT
TTGCAAAGTGTTGATGGTGAATCGGAGGAAGAAGAGAAATGTTTCGCGGT
TGACGATCACAAACGCGAGTTTTGTGGCACAGAAGTTATTTCGTGGCAGC
ACAAATCGCTTCCGTGCGTGTTGGTGTCGGTGGTGAAGAAGATGATGCTT
GCTCGTGTTGAGGGAGAGCCTTCTGTCGTACGTGTAGTCGATGCATCCAC
CTCTGTTTGGAAAGCGGCCCCAAAGACGCTGCGGTACGATTTGTGCATCT
CCAAGCGCGTGAAGTGGTTCTGTCTACTGGAAGACCTCGGGCATGGCGCT
GACGGCAGAGCGTTTCTAGTGTCCGGTGGTACGAAGGGGGCCATCGGAGT
GTTGAAGTTCTTCTTCGAGGATGCTGAGCAGTCGGCTCACCATGAAGCAG
AGATGTGGAAAGCTGCATACTCGCATCTCCCCGCAGTTTCTTCCGTTCGA
GTCGTGAAGGCCATGGGGCATACAGCGTTGTTGATGCCGTGGTTTCAAAC
TCCCACGCGAAACGAGGACACTCTGGCGGCAATTCAATCGACGCTGCAGG
ACGATTTCATGCACCGAGGTTATCGTCACGATGATGTTGCTTGGCGGAAC
GTGGGCGTCTACACCGACGCGGGGCAACTGAAAGCTATCGTGTTCGACAT
GAAGCGCGTGTCCTTGGACGCCAATCAAGAGGACTGGGTGACGGCTGCTG
TCTCATCTCTCCGCCGCAAGCTCGAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_856:2..1780+

>Gvermi11249.t1 ID=Gvermi11249.t1|Name=Gvermi11249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1779bp|location=Sequence derived from alignment at ScGOVlb_856:2..1780+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GTCATCGCTGCCGAGAGCAAAGTCGTCGCTGCCAAGGAGGAAGTCGTCGC
TGCCAAGGAGGAAGTCGTCGCTGCCAAGGAGGAAGTCGTCGCGGCCAAAG
CAAGTTCAGATGCTGCTGCCGTCAGTACTGCCGAGACGCTACTGCGACTC
GCCGTGTCGGGACTCGAGTCCGCCCATCAACGTGTGCAGTCGGCCCAGCG
AGgagtcgagtcggcccagcgaggagtcgagtcgGCCCAGGAGATGTTGT
CGGCGCTGCGCCACTCGGCGGCCCAAGCGCTGCTCACAGCGCCATCTCCA
GATCTCATTGTGGAGGAGCAGCGAGCCCAGAATGACAAACACATCTTCAC
GCACGGACTTCCGCCGTTGGGACCATTGTCTGATGGCACTCGTGCCAAGT
CCAAGCCGTCGTCGCCGACTGACGCCAAGCATGCCAAGGCCACGTTGATC
CTCGCCAACTTTGTCAATTTGTCTGACGTCAAGTCGCTACCGTGTCCCGT
CACCAACATTTGGAACCGCTTGGTGGGTAACACTGGTCATCTCGGTGGAT
ACTCCAACGAAGCAGGTGTAAACGAGTTTGTCAAATTGGTCATGGAAGAT
GTTCTCGAGGCGATGGGCGTTCGAGAGCAGGTAAAGCTTCGTGCCGAGGT
TGAAGTGATGAGTGCTCGCCCGGACTTTACGCTACTGTATGTGAATGGCC
ATCCCATTGGAACGATCGAAGACAAGCAACCGGGCAAGGACGCCATGACG
GATGGCAACATTCTCGGCGAAGTGTACGACCAACTGATGCATCTGCACAG
CATTTTCGGCGTGGACAACCCGTTTGCCATTCTGACATCCTACGAGGAGT
GGCGCATCTGCTGGCTGAATTTTGAGCGTAGCAACGAGGTCGCGGCTCTT
AAGGAGCTTCTTAACTCGCCTGCGATCTACACCACTCCTGTCAAGGCTCA
GAGAGATGACCAGTTGGCCGATTCTTTGCAAAAGGTGCATTTGAAAGAAG
AGTCTCCTGAGCCACCGGCCACTCCGAGTCGGACTCGAGACATCGGCTGT
TTGCAAAGTGTTGATGGTGAATCGGAGGAAGAAGAGAAATGTTTCGCGGT
TGACGATCACAAACGCGAGTTTTGTGGCACAGAAGTTATTTCGTGGCAGC
ACAAATCGCTTCCGTGCGTGTTGGTGTCGGTGGTGAAGAAGATGATGCTT
GCTCGTGTTGAGGGAGAGCCTTCTGTCGTACGTGTAGTCGATGCATCCAC
CTCTGTTTGGAAAGCGGCCCCAAAGACGCTGCGGTACGATTTGTGCATCT
CCAAGCGCGTGAAGTGGTTCTGTCTACTGGAAGACCTCGGGCATGGCGCT
GACGGCAGAGCGTTTCTAGTGTCCGGTGGTACGAAGGGGGCCATCGGAGT
GTTGAAGTTCTTCTTCGAGGATGCTGAGCAGTCGGCTCACCATGAAGCAG
AGATGTGGAAAGCTGCATACTCGCATCTCCCCGCAGTTTCTTCCGTTCGA
GTCGTGAAGGCCATGGGGCATACAGCGTTGTTGATGCCGTGGTTTCAAAC
TCCCACGCGAAACGAGGACACTCTGGCGGCAATTCAATCGACGCTGCAGG
ACGATTTCATGCACCGAGGTTATCGTCACGATGATGTTGCTTGGCGGAAC
GTGGGCGTCTACACCGACGCGGGGCAACTGAAAGCTATCGTGTTCGACAT
GAAGCGCGTGTCCTTGGACGCCAATCAAGAGGACTGGGTGACGGCTGCTG
TCTCATCTCTCCGCCGCAAGCTCGAGTAA