Gvermi11234.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11234.t1
Unique NameGvermi11234.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1816contigScGOVlb_1816:250..1672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11234Gvermi11234Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1816 250..1672 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11234.t1.start1Gvermi11234.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1816 250..252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11234.t1.CDS1Gvermi11234.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1816 250..282 +
Gvermi11234.t1.CDS2Gvermi11234.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1816 362..667 +
Gvermi11234.t1.CDS3Gvermi11234.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1816 770..1112 +
Gvermi11234.t1.CDS4Gvermi11234.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1816 1173..1522 +
Gvermi11234.t1.CDS5Gvermi11234.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1816 1576..1672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11234.t1.exon1Gvermi11234.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1816 250..282 +
Gvermi11234.t1.exon2Gvermi11234.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1816 362..667 +
Gvermi11234.t1.exon3Gvermi11234.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1816 770..1112 +
Gvermi11234.t1.exon4Gvermi11234.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1816 1173..1522 +
Gvermi11234.t1.exon5Gvermi11234.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1816 1576..1672 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11234.t1.intron1Gvermi11234.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1816 283..361 +
Gvermi11234.t1.intron2Gvermi11234.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1816 668..769 +
Gvermi11234.t1.intron3Gvermi11234.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1816 1113..1172 +
Gvermi11234.t1.intron4Gvermi11234.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1816 1523..1575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11234.t1Gvermi11234.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1816 250..1672 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11234.t1 ID=Gvermi11234.t1|Name=Gvermi11234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=377bp
MEWTAMPVCTEVAFKNIWGPQLDAVSPFSVEPALCPTLSVRVSLEEAASS
FIPVRTIAPFFLYSQGAQGCGVFDFAVEFAFKRHGFPSVVEFFGHQVNSI
IAKTFVEADRVALILQRVADSPHRSKGGDRSVSAQLNSIVCRVPPSIAVA
ATAYVCLDDVLHSGSSFHVFARLMVDQGVAPARLSGIALGRVASPFFPTA
VKTSDFIHPAPPCWKEVASLPLQPVPQDDGAFEVLLVARVPSSLKVCRAP
AKDSYVAHCTATAAASGLDAEAQHDKRKEAQKRWNTLSAADKATWEAVAA
QSIDDATLQELFATVKARVAPSPSLENAPSTDWESLSDGIVHFQSEAYLK
QAMKTIRTEATKRGLLIGNGHGAALRX
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spliced messenger RNA

>Gvermi11234.t1 ID=Gvermi11234.t1|Name=Gvermi11234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1129bp|location=Sequence derived from alignment at ScGOVlb_1816:250..1672+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATGGACGGCGATGCCCGTGTGCACTGAGGTCGCCTTCAAGAATAT
TTGGGGACCTCAGCTTGACGCTGTCTCTCCTTTTTCGGTGGAGCCGGCCC
TGTGCCCGACTCTCTCTGTGCGGGTGTCGTTGGAGGAGGCAGCCAGCTCA
TTCATCCCTGTCAGGACCATTGCGCCATTCTTCCTTTACTCACAAGGTGC
TCAGGGCTGCGGCGTCTTTGACTTTGCTGTCGAGTTTGCGTTCAAGCGCC
ATGGCTTCCCCTCCGTCGTCGAGTTCTTTGGGCATCAAGTCAACTCCATC
ATTGCCAAGACCTTTGTGGAGGCCGATCGAGTCGCCCTCATATTGCAGCG
TGTGGCCGACAGTCCGCACAGAAGCAAGGGGGGGGACCGCTCGGTTTCTG
CGCAACTGAACTCCATTGTGTGCCGCGTGCCCCCGTCTATCGCTGTCGCC
GCCACAGCCTACGTGTGTCTGGACGACGTCCTCCACTCGGGGTCGTCGTT
CCATGTGTTCGCCCGCCTCATGGTTGACCAGGGCGTCGCCCCCGCCCGGT
TGTCCGGGATTGCTTTGGGGCGCGTCGCTTCTCCATTCTTCCCTACGGCC
GTGAAGACTTCTGACTTCATTCACCCCGCCCCTCCGTGCTGGAAAGAAGT
GGCATCGCTGCCTCTACAACCTGTCCCTCAAGATGATGGTGCATTCGAAG
TGCTGCTGGTGGCTCGAGTGCCGTCTTCGCTCAAGGTTTGCCGAGCACCG
GCAAAAGACAGCTATGTGGCCCATTGTACAGCCACTGCGGCCGCATCTGG
GTTGGACGCGGAGGCGCAGCACGACAAGAGGAAGGAAGCTCAGAAGAGAT
GGAACACTCTCTCTGCTGCTGACAAGGCCACGTGGGAGGCCGTTGCCGCT
CAATCCATCGACGATGCGACTCTACAAGAACTCTTCGCCACTGTCAAGGC
CCGTGTTGCACCTTCGCCCTCTCTAGAGAACGCGCCCAGCACTGATTGGG
AGTCTCTTTCTGATGGCATCGTGCACTTCCAGAGTGAGGCGTATCTCAAG
CAGGCCATGAAGACCATCAGGACCGAGGCCACGAAGCGTGGGCTACTCAT
TGGAAATGGACATGGTGCTGCATTGCGGC
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protein sequence of Gvermi11234.t1

>Gvermi11234.t1 ID=Gvermi11234.t1|Name=Gvermi11234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=377bp
MEWTAMPVCTEVAFKNIWGPQLDAVSPFSVEPALCPTLSVRVSLEEAASS
FIPVRTIAPFFLYSQGAQGCGVFDFAVEFAFKRHGFPSVVEFFGHQVNSI
IAKTFVEADRVALILQRVADSPHRSKGGDRSVSAQLNSIVCRVPPSIAVA
ATAYVCLDDVLHSGSSFHVFARLMVDQGVAPARLSGIALGRVASPFFPTA
VKTSDFIHPAPPCWKEVASLPLQPVPQDDGAFEVLLVARVPSSLKVCRAP
AKDSYVAHCTATAAASGLDAEAQHDKRKEAQKRWNTLSAADKATWEAVAA
QSIDDATLQELFATVKARVAPSPSLENAPSTDWESLSDGIVHFQSEAYLK
QAMKTIRTEATKRGLLIGNGHGAALRX
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mRNA from alignment at ScGOVlb_1816:250..1672+

Legend: start_codonpolypeptideCDSexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11234.t1 ID=Gvermi11234.t1|Name=Gvermi11234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1423bp|location=Sequence derived from alignment at ScGOVlb_1816:250..1672+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATGGACGGCGATGCCCGTGTGCACTGAGGTGCGTGCTGTTGCGTG
ATGGAGAGGGCGCCGCCGGCTTGCCGGACCACTCACTTCTCCTCTTTCTC
TTTGTCTCTCAGGTCGCCTTCAAGAATATTTGGGGACCTCAGCTTGACGC
TGTCTCTCCTTTTTCGGTGGAGCCGGCCCTGTGCCCGACTCTCTCTGTGC
GGGTGTCGTTGGAGGAGGCAGCCAGCTCATTCATCCCTGTCAGGACCATT
GCGCCATTCTTCCTTTACTCACAAGGTGCTCAGGGCTGCGGCGTCTTTGA
CTTTGCTGTCGAGTTTGCGTTCAAGCGCCATGGCTTCCCCTCCGTCGTCG
AGTTCTTTGGGCATCAAGTCAACTCCATCATTGCCAAGACCTTTGTGGAG
GCCGATCGAGTCGCCCTCGTATGTTACCCCCCCCACAATCCGGGATGCGC
CCCCCCGTGTGCAGCGCTGGCTCATTGGCTCTGCGCTCGGAACCCCGGGC
GGTTCATCGACGGAAGTCAGATATTGCAGCGTGTGGCCGACAGTCCGCAC
AGAAGCAAGGGGGGGGACCGCTCGGTTTCTGCGCAACTGAACTCCATTGT
GTGCCGCGTGCCCCCGTCTATCGCTGTCGCCGCCACAGCCTACGTGTGTC
TGGACGACGTCCTCCACTCGGGGTCGTCGTTCCATGTGTTCGCCCGCCTC
ATGGTTGACCAGGGCGTCGCCCCCGCCCGGTTGTCCGGGATTGCTTTGGG
GCGCGTCGCTTCTCCATTCTTCCCTACGGCCGTGAAGACTTCTGACTTCA
TTCACCCCGCCCCTCCGTGCTGGAAAGAAGTGGCATCGCTGCCTCTACAA
CCTGTCCCTCAAGGTTTGTCTTAAAAAAAAAACACAGCAGCCTCACAGTC
TTTCCCTCTTCTCTTCCTCCCAGATGATGGTGCATTCGAAGTGCTGCTGG
TGGCTCGAGTGCCGTCTTCGCTCAAGGTTTGCCGAGCACCGGCAAAAGAC
AGCTATGTGGCCCATTGTACAGCCACTGCGGCCGCATCTGGGTTGGACGC
GGAGGCGCAGCACGACAAGAGGAAGGAAGCTCAGAAGAGATGGAACACTC
TCTCTGCTGCTGACAAGGCCACGTGGGAGGCCGTTGCCGCTCAATCCATC
GACGATGCGACTCTACAAGAACTCTTCGCCACTGTCAAGGCCCGTGTTGC
ACCTTCGCCCTCTCTAGAGAACGCGCCCAGCACTGATTGGGAGTCTCTTT
CTGATGGCATCGTGCACTTCCAGGTGCAGAACCACTTTTCTTTGTTTTTT
TGGACTTTTTCACTGTCTCGTTGAAGAGTGAGGCGTATCTCAAGCAGGCC
ATGAAGACCATCAGGACCGAGGCCACGAAGCGTGGGCTACTCATTGGAAA
TGGACATGGTGCTGCATTGCGGC
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Coding sequence (CDS) from alignment at ScGOVlb_1816:250..1672+

>Gvermi11234.t1 ID=Gvermi11234.t1|Name=Gvermi11234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1129bp|location=Sequence derived from alignment at ScGOVlb_1816:250..1672+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATGGACGGCGATGCCCGTGTGCACTGAGGTCGCCTTCAAGAATAT
TTGGGGACCTCAGCTTGACGCTGTCTCTCCTTTTTCGGTGGAGCCGGCCC
TGTGCCCGACTCTCTCTGTGCGGGTGTCGTTGGAGGAGGCAGCCAGCTCA
TTCATCCCTGTCAGGACCATTGCGCCATTCTTCCTTTACTCACAAGGTGC
TCAGGGCTGCGGCGTCTTTGACTTTGCTGTCGAGTTTGCGTTCAAGCGCC
ATGGCTTCCCCTCCGTCGTCGAGTTCTTTGGGCATCAAGTCAACTCCATC
ATTGCCAAGACCTTTGTGGAGGCCGATCGAGTCGCCCTCATATTGCAGCG
TGTGGCCGACAGTCCGCACAGAAGCAAGGGGGGGGACCGCTCGGTTTCTG
CGCAACTGAACTCCATTGTGTGCCGCGTGCCCCCGTCTATCGCTGTCGCC
GCCACAGCCTACGTGTGTCTGGACGACGTCCTCCACTCGGGGTCGTCGTT
CCATGTGTTCGCCCGCCTCATGGTTGACCAGGGCGTCGCCCCCGCCCGGT
TGTCCGGGATTGCTTTGGGGCGCGTCGCTTCTCCATTCTTCCCTACGGCC
GTGAAGACTTCTGACTTCATTCACCCCGCCCCTCCGTGCTGGAAAGAAGT
GGCATCGCTGCCTCTACAACCTGTCCCTCAAGATGATGGTGCATTCGAAG
TGCTGCTGGTGGCTCGAGTGCCGTCTTCGCTCAAGGTTTGCCGAGCACCG
GCAAAAGACAGCTATGTGGCCCATTGTACAGCCACTGCGGCCGCATCTGG
GTTGGACGCGGAGGCGCAGCACGACAAGAGGAAGGAAGCTCAGAAGAGAT
GGAACACTCTCTCTGCTGCTGACAAGGCCACGTGGGAGGCCGTTGCCGCT
CAATCCATCGACGATGCGACTCTACAAGAACTCTTCGCCACTGTCAAGGC
CCGTGTTGCACCTTCGCCCTCTCTAGAGAACGCGCCCAGCACTGATTGGG
AGTCTCTTTCTGATGGCATCGTGCACTTCCAGAGTGAGGCGTATCTCAAG
CAGGCCATGAAGACCATCAGGACCGAGGCCACGAAGCGTGGGCTACTCAT
TGGAAATGGACATGGTGCTGCATTGCGGC
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