Gvermi10987.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10987.t1
Unique NameGvermi10987.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3683contigScGOVlb_3683:100..741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1392244.V5ERQ0
PFAMsARID,JmjC,JmjN,PHD,PLU-1,zf-C5HC2
Max annot lvl4751|Fungi
KEGG koko:K11446
GOsGO:0000122,GO:0000183,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006401,GO:0006464,GO:0006479,GO:0006482,GO:0006725,GO:0006807,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008213,GO:0008214,GO:0008270,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0016043,GO:0016070,GO:0016458,GO:0016491,GO:0016569,GO:0016570,GO:0016571,GO:0016577,GO:0016705,GO:0016706,GO:0016740,GO:0018022,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019787,GO:0022607,GO:0030466,GO:0030702,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031497,GO:0031503,GO:0031507,GO:0031618,GO:0031934,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0032451,GO:0032452,GO:0032453,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034613,GO:0034629,GO:0034630,GO:0034641,GO:0034647,GO:0034648,GO:0034649,GO:0034655,GO:0034660,GO:0034661,GO:0034720,GO:0034721,GO:0034968,GO:0036211,GO:0040029,GO:0042868,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0048189,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051213,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051567,GO:0051569,GO:0051572,GO:0051641,GO:0051864,GO:0055114,GO:0060255,GO:0060623,GO:0061647,GO:0061659,GO:0065007,GO:0070013,GO:0070076,GO:0070544,GO:0070647,GO:0070727,GO:0070828,GO:0070988,GO:0071041,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0140096,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904388,GO:1905268,GO:2000112,GO:2000113,GO:2001141,GO:2001251
Evalue2e-06
EggNOG OGsCOG0055@1|root,KOG1246@2759|Eukaryota,38D5X@33154|Opisthokonta,3NTX1@4751|Fungi,3UXU2@5204|Basidiomycota,3N0Z4@452284|Ustilaginomycotina
DescriptionBRIGHT, ARID (A/T-rich interaction domain) domain
COG categoryK
BRITEko00000,ko01000,ko01009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10987Gvermi10987Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3683 100..741 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10987.t1.start1Gvermi10987.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3683 100..102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10987.t1.CDS1Gvermi10987.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3683 100..741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10987.t1.exon1Gvermi10987.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3683 100..741 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10987.t1.stop1Gvermi10987.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3683 739..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10987.t1Gvermi10987.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3683 100..741 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10987.t1 ID=Gvermi10987.t1|Name=Gvermi10987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=214bp
MPKPDMVLRNRPLHEAEEVMARLKRVVLFHPDPLIMELASTYCVCGQGER
KRGKKTKRMICCDECLEWFHFDCVRLPDDYDVGEGDWKCEWCLSKPDKEG
RQAWRTGRKKAKYRHRSDRPVDLGATNEGSPPPRYSTPPKWDDRRALIEE
LSRRKGVKKRKLMVRVQELSDEGGHHLVDAEGPNRLQLRPVDETLVDDFV
GAGLVDPDEVDDE*
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spliced messenger RNA

>Gvermi10987.t1 ID=Gvermi10987.t1|Name=Gvermi10987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_3683:100..741+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGCCGGATATGGTCTTGCGGAACCGACCCCTTCATGAGGCCGA
GGAAGTCATGGCGCGGCTGAAGCGAGTCGTGCTGTTCCATCCCGACCCTC
TCATCATGGAGCTGGCCTCCACGTACTGCGTCTGCGGCCAGGGGGAGCGC
AAGCGCGGCAAGAAGACCAAGCGCATGATCTGCTGCGACGAGTGCCTGGA
GTGGTTCCATTTTGACTGCGTGAGGCTTCCCGATGACTACGACGTTGGAG
AGGGTGACTGGAAGTGCGAGTGGTGCCTCAGCAAGCCCGACAAGGAAGGG
CGCCAGGCCTGGCGCACTGGGCGCAAGAAGGCCAAGTATCGCCATCGCAG
CGACCGCCCAGTGGACCTGGGAGCTACAAATGAGGGCAGCCCTCCTCCCA
GGTACAGCACGCCCCCCAAGTGGGACGATCGCAGGGCCCTGATCGAGGAG
CTGTCGCGGCGCAAGGGCGTCAAAAAACGGAAACTTATGGTCCGTGTGCA
GGAGCTGTCTGATGAGGGAGGCCACCACTTGGTCGACGCTGAAGGCCCGA
ACCGTTTGCAGCTGCGTCCCGTCGACGAGACGCTTGTGGACGATTTCGTG
GGGGCGGGGCTTGTGGATCCCGACGAAGTGGATGATGAATGA
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protein sequence of Gvermi10987.t1

>Gvermi10987.t1 ID=Gvermi10987.t1|Name=Gvermi10987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=214bp
MPKPDMVLRNRPLHEAEEVMARLKRVVLFHPDPLIMELASTYCVCGQGER
KRGKKTKRMICCDECLEWFHFDCVRLPDDYDVGEGDWKCEWCLSKPDKEG
RQAWRTGRKKAKYRHRSDRPVDLGATNEGSPPPRYSTPPKWDDRRALIEE
LSRRKGVKKRKLMVRVQELSDEGGHHLVDAEGPNRLQLRPVDETLVDDFV
GAGLVDPDEVDDE*
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mRNA from alignment at ScGOVlb_3683:100..741+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10987.t1 ID=Gvermi10987.t1|Name=Gvermi10987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_3683:100..741+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAAGCCGGATATGGTCTTGCGGAACCGACCCCTTCATGAGGCCGA
GGAAGTCATGGCGCGGCTGAAGCGAGTCGTGCTGTTCCATCCCGACCCTC
TCATCATGGAGCTGGCCTCCACGTACTGCGTCTGCGGCCAGGGGGAGCGC
AAGCGCGGCAAGAAGACCAAGCGCATGATCTGCTGCGACGAGTGCCTGGA
GTGGTTCCATTTTGACTGCGTGAGGCTTCCCGATGACTACGACGTTGGAG
AGGGTGACTGGAAGTGCGAGTGGTGCCTCAGCAAGCCCGACAAGGAAGGG
CGCCAGGCCTGGCGCACTGGGCGCAAGAAGGCCAAGTATCGCCATCGCAG
CGACCGCCCAGTGGACCTGGGAGCTACAAATGAGGGCAGCCCTCCTCCCA
GGTACAGCACGCCCCCCAAGTGGGACGATCGCAGGGCCCTGATCGAGGAG
CTGTCGCGGCGCAAGGGCGTCAAAAAACGGAAACTTATGGTCCGTGTGCA
GGAGCTGTCTGATGAGGGAGGCCACCACTTGGTCGACGCTGAAGGCCCGA
ACCGTTTGCAGCTGCGTCCCGTCGACGAGACGCTTGTGGACGATTTCGTG
GGGGCGGGGCTTGTGGATCCCGACGAAGTGGATGATGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3683:100..741+

>Gvermi10987.t1 ID=Gvermi10987.t1|Name=Gvermi10987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=642bp|location=Sequence derived from alignment at ScGOVlb_3683:100..741+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAAGCCGGATATGGTCTTGCGGAACCGACCCCTTCATGAGGCCGA
GGAAGTCATGGCGCGGCTGAAGCGAGTCGTGCTGTTCCATCCCGACCCTC
TCATCATGGAGCTGGCCTCCACGTACTGCGTCTGCGGCCAGGGGGAGCGC
AAGCGCGGCAAGAAGACCAAGCGCATGATCTGCTGCGACGAGTGCCTGGA
GTGGTTCCATTTTGACTGCGTGAGGCTTCCCGATGACTACGACGTTGGAG
AGGGTGACTGGAAGTGCGAGTGGTGCCTCAGCAAGCCCGACAAGGAAGGG
CGCCAGGCCTGGCGCACTGGGCGCAAGAAGGCCAAGTATCGCCATCGCAG
CGACCGCCCAGTGGACCTGGGAGCTACAAATGAGGGCAGCCCTCCTCCCA
GGTACAGCACGCCCCCCAAGTGGGACGATCGCAGGGCCCTGATCGAGGAG
CTGTCGCGGCGCAAGGGCGTCAAAAAACGGAAACTTATGGTCCGTGTGCA
GGAGCTGTCTGATGAGGGAGGCCACCACTTGGTCGACGCTGAAGGCCCGA
ACCGTTTGCAGCTGCGTCCCGTCGACGAGACGCTTGTGGACGATTTCGTG
GGGGCGGGGCTTGTGGATCCCGACGAAGTGGATGATGAATGA
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