Gvermi10815.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10815.t1
Unique NameGvermi10815.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2216contigScGOVlb_2216:395..1279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10815Gvermi10815Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2216 395..1279 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10815.t1.stop1Gvermi10815.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2216 395..397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10815.t1.CDS1Gvermi10815.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2216 395..1279 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10815.t1.exon1Gvermi10815.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2216 395..1279 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10815.t1.start1Gvermi10815.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2216 1277..1279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10815.t1Gvermi10815.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2216 395..1279 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10815.t1 ID=Gvermi10815.t1|Name=Gvermi10815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=295bp
LDHSAAVAVGIAMEEMLTATLMPLAQQHVERCRQQEANIPADKCVEMAKS
TEEDLEHARAVKRAREHVCQERTMPPEEAIANLISSGTVTTNAFRGLATA
FPPKISSVRGAVGTFLLNMPNPGVRETTALSLWCQSNGLDPAFVRNNMDL
FGLLVPSATPSAGTAAAPAIAQASTADNPDLPQNYVDISDLREAAAPPSG
FANVTSIAASASDNQALAQNYVGFSDLREAAAPAPAGSANVTLIAASAAD
NPALAQNYVDVSDLQEAAAPPAGTTNVTSIASSTTDDEPTHYQI*
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spliced messenger RNA

>Gvermi10815.t1 ID=Gvermi10815.t1|Name=Gvermi10815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_2216:395..1279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGACCATTCCGCTGCCGTTGCTGTCGGCATTGCCATGGAGGAGATGTT
GACTGCAACACTCATGCCGCTGGCGCAACAGCACGTTGAGCGGTGCCGGC
AACAAGAAGCGAATATTCCGGCCGACAAGTGTGTCGAGATGGCCAAAAGT
ACGGAAGAAGACCTCGAGCACGCTCGCGCTGTCAAACGTGCAAGGGAGCA
TGTCTGTCAAGAGCGGACTATGCCTCCGGAAGAGGCTATTGCCAATCTCA
TTAGTAGCGGTACAGTTACAACAAACGCCTTCCGAGGCCTTGCGACGGCT
TTTCCTCCAAAGATAAGCTCAGTACGGGGTGCTGTAGGGACATTTCTGCT
CAACATGCCGAACCCGGGGGTTCGAGAGACAACTGCGCTATCACTCTGGT
GTCAAAGCAATGGATTGGACCCTGCTTTTGTGCGGAACAACATGGATCTT
TTTGGCCTGCTGGTTCCATCCGCTACACCCAGTGCTGGTACAGCTGCTGC
TCCTGCAATCGCACAAGCGTCAACTGCGGACAATCCTGATTTGCCGCAAA
ATTACGTGGACATTTCTGACCTTCGTGAAGCAGCGGCTCCTCCCTCTGGT
TTTGCTAATGTTACATCGATTGCAGCATCAGCATCAGACAATCAAGCATT
GGCGCAAAATTACGTGGGCTTTTCTGACCTACGAGAAGCAGCGGCTCCTG
CTCCCGCTGGTAGCGCAAATGTTACATTGATCGCAGCATCAGCCGCAGAC
AATCCTGCTTTGGCGCAAAATTACGTGGACGTTTCTGACCTACAAGAAGC
GGCGGCTCCCCCAGCTGGTACTACAAATGTTACATCGATCGCATCGTCAA
CAACAGACGATGAGCCTACTCACTATCAAATATAG
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protein sequence of Gvermi10815.t1

>Gvermi10815.t1 ID=Gvermi10815.t1|Name=Gvermi10815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=295bp
LDHSAAVAVGIAMEEMLTATLMPLAQQHVERCRQQEANIPADKCVEMAKS
TEEDLEHARAVKRAREHVCQERTMPPEEAIANLISSGTVTTNAFRGLATA
FPPKISSVRGAVGTFLLNMPNPGVRETTALSLWCQSNGLDPAFVRNNMDL
FGLLVPSATPSAGTAAAPAIAQASTADNPDLPQNYVDISDLREAAAPPSG
FANVTSIAASASDNQALAQNYVGFSDLREAAAPAPAGSANVTLIAASAAD
NPALAQNYVDVSDLQEAAAPPAGTTNVTSIASSTTDDEPTHYQI*
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mRNA from alignment at ScGOVlb_2216:395..1279-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10815.t1 ID=Gvermi10815.t1|Name=Gvermi10815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_2216:395..1279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGACCATTCCGCTGCCGTTGCTGTCGGCATTGCCATGGAGGAGATGTT
GACTGCAACACTCATGCCGCTGGCGCAACAGCACGTTGAGCGGTGCCGGC
AACAAGAAGCGAATATTCCGGCCGACAAGTGTGTCGAGATGGCCAAAAGT
ACGGAAGAAGACCTCGAGCACGCTCGCGCTGTCAAACGTGCAAGGGAGCA
TGTCTGTCAAGAGCGGACTATGCCTCCGGAAGAGGCTATTGCCAATCTCA
TTAGTAGCGGTACAGTTACAACAAACGCCTTCCGAGGCCTTGCGACGGCT
TTTCCTCCAAAGATAAGCTCAGTACGGGGTGCTGTAGGGACATTTCTGCT
CAACATGCCGAACCCGGGGGTTCGAGAGACAACTGCGCTATCACTCTGGT
GTCAAAGCAATGGATTGGACCCTGCTTTTGTGCGGAACAACATGGATCTT
TTTGGCCTGCTGGTTCCATCCGCTACACCCAGTGCTGGTACAGCTGCTGC
TCCTGCAATCGCACAAGCGTCAACTGCGGACAATCCTGATTTGCCGCAAA
ATTACGTGGACATTTCTGACCTTCGTGAAGCAGCGGCTCCTCCCTCTGGT
TTTGCTAATGTTACATCGATTGCAGCATCAGCATCAGACAATCAAGCATT
GGCGCAAAATTACGTGGGCTTTTCTGACCTACGAGAAGCAGCGGCTCCTG
CTCCCGCTGGTAGCGCAAATGTTACATTGATCGCAGCATCAGCCGCAGAC
AATCCTGCTTTGGCGCAAAATTACGTGGACGTTTCTGACCTACAAGAAGC
GGCGGCTCCCCCAGCTGGTACTACAAATGTTACATCGATCGCATCGTCAA
CAACAGACGATGAGCCTACTCACTATCAAATATAG
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Coding sequence (CDS) from alignment at ScGOVlb_2216:395..1279-

>Gvermi10815.t1 ID=Gvermi10815.t1|Name=Gvermi10815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=885bp|location=Sequence derived from alignment at ScGOVlb_2216:395..1279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGACCATTCCGCTGCCGTTGCTGTCGGCATTGCCATGGAGGAGATGTT
GACTGCAACACTCATGCCGCTGGCGCAACAGCACGTTGAGCGGTGCCGGC
AACAAGAAGCGAATATTCCGGCCGACAAGTGTGTCGAGATGGCCAAAAGT
ACGGAAGAAGACCTCGAGCACGCTCGCGCTGTCAAACGTGCAAGGGAGCA
TGTCTGTCAAGAGCGGACTATGCCTCCGGAAGAGGCTATTGCCAATCTCA
TTAGTAGCGGTACAGTTACAACAAACGCCTTCCGAGGCCTTGCGACGGCT
TTTCCTCCAAAGATAAGCTCAGTACGGGGTGCTGTAGGGACATTTCTGCT
CAACATGCCGAACCCGGGGGTTCGAGAGACAACTGCGCTATCACTCTGGT
GTCAAAGCAATGGATTGGACCCTGCTTTTGTGCGGAACAACATGGATCTT
TTTGGCCTGCTGGTTCCATCCGCTACACCCAGTGCTGGTACAGCTGCTGC
TCCTGCAATCGCACAAGCGTCAACTGCGGACAATCCTGATTTGCCGCAAA
ATTACGTGGACATTTCTGACCTTCGTGAAGCAGCGGCTCCTCCCTCTGGT
TTTGCTAATGTTACATCGATTGCAGCATCAGCATCAGACAATCAAGCATT
GGCGCAAAATTACGTGGGCTTTTCTGACCTACGAGAAGCAGCGGCTCCTG
CTCCCGCTGGTAGCGCAAATGTTACATTGATCGCAGCATCAGCCGCAGAC
AATCCTGCTTTGGCGCAAAATTACGTGGACGTTTCTGACCTACAAGAAGC
GGCGGCTCCCCCAGCTGGTACTACAAATGTTACATCGATCGCATCGTCAA
CAACAGACGATGAGCCTACTCACTATCAAATATAG
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