Gvermi10720.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10720.t1
Unique NameGvermi10720.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length33
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_14881contigScGOVlb_14881:1..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10720Gvermi10720Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_14881 1..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10720.t1Gvermi10720.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_14881 1..196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10720.t1.CDS1Gvermi10720.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_14881 1..15 -
Gvermi10720.t1.CDS2Gvermi10720.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_14881 114..196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10720.t1.exon1Gvermi10720.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_14881 1..15 -
Gvermi10720.t1.exon2Gvermi10720.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_14881 114..196 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10720.t1.intron1Gvermi10720.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_14881 16..113 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10720.t1.start1Gvermi10720.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_14881 194..196 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10720.t1 ID=Gvermi10720.t1|Name=Gvermi10720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=33bp
MTAALHVRRNKSLQDPNDSLIAYVLRLRLRDEP
back to top

spliced messenger RNA

>Gvermi10720.t1 ID=Gvermi10720.t1|Name=Gvermi10720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=98bp|location=Sequence derived from alignment at ScGOVlb_14881:1..196- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCAGCCCTCCACGTTCGGCGGAACAAATCTCTTCAAGACCCGAA
TGACTCTTTGATCGCATACGTTTTGCGTTTAAGGTTGCGTGATGAACC
back to top

protein sequence of Gvermi10720.t1

>Gvermi10720.t1 ID=Gvermi10720.t1|Name=Gvermi10720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=33bp
MTAALHVRRNKSLQDPNDSLIAYVLRLRLRDEP
back to top

mRNA from alignment at ScGOVlb_14881:1..196-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10720.t1 ID=Gvermi10720.t1|Name=Gvermi10720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=196bp|location=Sequence derived from alignment at ScGOVlb_14881:1..196- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCAGCCCTCCACGTTCGGCGGAACAAATCTCTTCAAGACCCGAA
TGACTCTTTGATCGCATACGTTTTGCGTTTAAGGTAATGTATCACCCCGA
AAACAGTCCTCTCCGCCCTACCTAGGTAGGAGAGCAAATTTGACGACAAA
AGCTAATCGCGGCGAGAGTGCTCCTATTTAGGTTGCGTGATGAACC
back to top

Coding sequence (CDS) from alignment at ScGOVlb_14881:1..196-

>Gvermi10720.t1 ID=Gvermi10720.t1|Name=Gvermi10720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=98bp|location=Sequence derived from alignment at ScGOVlb_14881:1..196- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCAGCCCTCCACGTTCGGCGGAACAAATCTCTTCAAGACCCGAA
TGACTCTTTGATCGCATACGTTTTGCGTTTAAGGTTGCGTGATGAACC
back to top