Gvermi10710.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi10710.t1
Unique Name	Gvermi10710.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_6166	contig	ScGOVlb_6166:2..925 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004348647.1
Max annot lvl	2759\|Eukaryota
Evalue	1.03e-09
EggNOG OGs	2D3WS@1\|root,2ST1F@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi10710	Gvermi10710	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_6166 2..925 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi10710.t1.CDS1	Gvermi10710.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_6166 2..925 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi10710.t1.exon1	Gvermi10710.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_6166 2..925 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi10710.t1	Gvermi10710.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_6166 2..925 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_6166:2..925+
coding sequence from alignment at ScGOVlb_6166:2..925+

mRNA sequence

>Gvermi10710.t1 ID=Gvermi10710.t1|Name=Gvermi10710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=309bp
XAASEVLMDDGRAVDSETPVRRKGPAGRKKQSPEATPSKKKACVHPLTFH
EEGTHSGDAEDDETSVDAQNDGDNAERVLLCTRVYDIEDESDNRDLFRLL
ASAILKMWNCVPARLDDPFESLGKRTVLKFTHQSVFWSRVGSVKPQWDKM
PTQRAGELFAVEDLGHGAEGRCWLVCTAAGRVAVLKFFRIQDPKAAAMRE
KERWDAVYPALGKMVRVERWGGHWALVMPHLSQSVSRDERAVDAVRRTLQ
EDYVDRGWTQPVREVRWRNIGFYSDPDGHLTAVVFDMSHVERNEEKNSSW
VDQCIGWLX

spliced messenger RNA

>Gvermi10710.t1 ID=Gvermi10710.t1|Name=Gvermi10710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=924bp|location=Sequence derived from alignment at ScGOVlb_6166:2..925+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TAGCTGCCAGTGAGGTTTTGATGGATGATGGGCGTGCCGTCGATTCCGAG
ACACCTGTGCGGAGAAAGGGGCCCGCTGGTAGGAAGAAGCAGTCCCCCGA
GGCAACACCAAGCAAAAAGAAGGCTTGTGTACATCCTCTTACCTTTCATG
AGGAAGGTACTCATTCTGGTGATGCCGAGGACGATGAAACATCTGTTGAC
GCACAGAACGATGGCGATAACGCAGAGCGTGTATTGTTGTGCACCCGTGT
TTACGACATTGAGGACGAGTCCGATAATCGTGATTTGTTTCGCCTTTTAG
CTTCAGCCATCCTGAAAATGTGGAACTGTGTCCCTGCACGGCTGGATGAT
CCATTTGAAAGTCTTGGGAAGCGAACTGTCCTCAAATTCACTCATCAATC
AGTGTTCTGGAGTCGGGTGGGTTCGGTGAAGCCACAGTGGGACAAGATGC
CAACCCAGCGTGCAGGGGAATTGTTTGCTGTGGAAGATTTGGGACATGGT
GCAGAGGGACGCTGCTGGCTTGTCTGTACTGCAGCAGGGAGAGTGGCAGT
GCTCAAGTTCTTTCGCATACAAGACCCTAAAGCAGCTGCAATGAGAGAAA
AGGAGCGCTGGGATGCTGTATATCCTGCACTCGGGAAGATGGTCAGGGTA
GAACGATGGGGAGGGCACTGGGCACTGGTGATGCCCCATCTGTCCCAATC
AGTGTCAAGAGACGAGCGCGCAGTGGATGCAGTTCGGCGTACTCTGCAAG
AAGACTATGTTGACCGTGGCTGGACACAACCAGTGCGGGAAGTTCGCTGG
AGAAACATTGGGTTCTACTCTGATCCTGATGGACACTTGACAGCGGTAGT
CTTTGATATGAGCCATGTCGAGAGGAATGAGGAAAAGAATTCGTCCTGGG
TAGACCAGTGCATTGGCTGGCTCA

protein sequence of Gvermi10710.t1

>Gvermi10710.t1 ID=Gvermi10710.t1|Name=Gvermi10710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=309bp
XAASEVLMDDGRAVDSETPVRRKGPAGRKKQSPEATPSKKKACVHPLTFH
EEGTHSGDAEDDETSVDAQNDGDNAERVLLCTRVYDIEDESDNRDLFRLL
ASAILKMWNCVPARLDDPFESLGKRTVLKFTHQSVFWSRVGSVKPQWDKM
PTQRAGELFAVEDLGHGAEGRCWLVCTAAGRVAVLKFFRIQDPKAAAMRE
KERWDAVYPALGKMVRVERWGGHWALVMPHLSQSVSRDERAVDAVRRTLQ
EDYVDRGWTQPVREVRWRNIGFYSDPDGHLTAVVFDMSHVERNEEKNSSW
VDQCIGWLX

mRNA from alignment at ScGOVlb_6166:2..925+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi10710.t1 ID=Gvermi10710.t1|Name=Gvermi10710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=924bp|location=Sequence derived from alignment at ScGOVlb_6166:2..925+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TAGCTGCCAGTGAGGTTTTGATGGATGATGGGCGTGCCGTCGATTCCGAG
ACACCTGTGCGGAGAAAGGGGCCCGCTGGTAGGAAGAAGCAGTCCCCCGA
GGCAACACCAAGCAAAAAGAAGGCTTGTGTACATCCTCTTACCTTTCATG
AGGAAGGTACTCATTCTGGTGATGCCGAGGACGATGAAACATCTGTTGAC
GCACAGAACGATGGCGATAACGCAGAGCGTGTATTGTTGTGCACCCGTGT
TTACGACATTGAGGACGAGTCCGATAATCGTGATTTGTTTCGCCTTTTAG
CTTCAGCCATCCTGAAAATGTGGAACTGTGTCCCTGCACGGCTGGATGAT
CCATTTGAAAGTCTTGGGAAGCGAACTGTCCTCAAATTCACTCATCAATC
AGTGTTCTGGAGTCGGGTGGGTTCGGTGAAGCCACAGTGGGACAAGATGC
CAACCCAGCGTGCAGGGGAATTGTTTGCTGTGGAAGATTTGGGACATGGT
GCAGAGGGACGCTGCTGGCTTGTCTGTACTGCAGCAGGGAGAGTGGCAGT
GCTCAAGTTCTTTCGCATACAAGACCCTAAAGCAGCTGCAATGAGAGAAA
AGGAGCGCTGGGATGCTGTATATCCTGCACTCGGGAAGATGGTCAGGGTA
GAACGATGGGGAGGGCACTGGGCACTGGTGATGCCCCATCTGTCCCAATC
AGTGTCAAGAGACGAGCGCGCAGTGGATGCAGTTCGGCGTACTCTGCAAG
AAGACTATGTTGACCGTGGCTGGACACAACCAGTGCGGGAAGTTCGCTGG
AGAAACATTGGGTTCTACTCTGATCCTGATGGACACTTGACAGCGGTAGT
CTTTGATATGAGCCATGTCGAGAGGAATGAGGAAAAGAATTCGTCCTGGG
TAGACCAGTGCATTGGCTGGCTCA

Coding sequence (CDS) from alignment at ScGOVlb_6166:2..925+

>Gvermi10710.t1 ID=Gvermi10710.t1|Name=Gvermi10710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=924bp|location=Sequence derived from alignment at ScGOVlb_6166:2..925+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TAGCTGCCAGTGAGGTTTTGATGGATGATGGGCGTGCCGTCGATTCCGAG
ACACCTGTGCGGAGAAAGGGGCCCGCTGGTAGGAAGAAGCAGTCCCCCGA
GGCAACACCAAGCAAAAAGAAGGCTTGTGTACATCCTCTTACCTTTCATG
AGGAAGGTACTCATTCTGGTGATGCCGAGGACGATGAAACATCTGTTGAC
GCACAGAACGATGGCGATAACGCAGAGCGTGTATTGTTGTGCACCCGTGT
TTACGACATTGAGGACGAGTCCGATAATCGTGATTTGTTTCGCCTTTTAG
CTTCAGCCATCCTGAAAATGTGGAACTGTGTCCCTGCACGGCTGGATGAT
CCATTTGAAAGTCTTGGGAAGCGAACTGTCCTCAAATTCACTCATCAATC
AGTGTTCTGGAGTCGGGTGGGTTCGGTGAAGCCACAGTGGGACAAGATGC
CAACCCAGCGTGCAGGGGAATTGTTTGCTGTGGAAGATTTGGGACATGGT
GCAGAGGGACGCTGCTGGCTTGTCTGTACTGCAGCAGGGAGAGTGGCAGT
GCTCAAGTTCTTTCGCATACAAGACCCTAAAGCAGCTGCAATGAGAGAAA
AGGAGCGCTGGGATGCTGTATATCCTGCACTCGGGAAGATGGTCAGGGTA
GAACGATGGGGAGGGCACTGGGCACTGGTGATGCCCCATCTGTCCCAATC
AGTGTCAAGAGACGAGCGCGCAGTGGATGCAGTTCGGCGTACTCTGCAAG
AAGACTATGTTGACCGTGGCTGGACACAACCAGTGCGGGAAGTTCGCTGG
AGAAACATTGGGTTCTACTCTGATCCTGATGGACACTTGACAGCGGTAGT
CTTTGATATGAGCCATGTCGAGAGGAATGAGGAAAAGAATTCGTCCTGGG
TAGACCAGTGCATTGGCTGGCTCA