Gvermi10648.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10648.t1
Unique NameGvermi10648.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length29
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_9305contigScGOVlb_9305:193..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10648Gvermi10648Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_9305 193..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10648.t1Gvermi10648.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_9305 193..374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10648.t1.CDS1Gvermi10648.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_9305 193..258 +
Gvermi10648.t1.CDS2Gvermi10648.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_9305 356..374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10648.t1.exon1Gvermi10648.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_9305 193..258 +
Gvermi10648.t1.exon2Gvermi10648.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_9305 356..374 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10648.t1.intron1Gvermi10648.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_9305 259..355 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10648.t1.stop1Gvermi10648.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_9305 372..374 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10648.t1 ID=Gvermi10648.t1|Name=Gvermi10648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=29bp
XQTVLITSQRQSFFRRSIFICNLIRHHE*
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spliced messenger RNA

>Gvermi10648.t1 ID=Gvermi10648.t1|Name=Gvermi10648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=85bp|location=Sequence derived from alignment at ScGOVlb_9305:193..374+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GCAAACGGTGCTGATCACTTCACAGCGCCAGAGTTTCTTCCGGCGATCGa
ttttcatttgtaatctcattcgacaccatgaatga
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protein sequence of Gvermi10648.t1

>Gvermi10648.t1 ID=Gvermi10648.t1|Name=Gvermi10648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=29bp
XQTVLITSQRQSFFRRSIFICNLIRHHE*
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mRNA from alignment at ScGOVlb_9305:193..374+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10648.t1 ID=Gvermi10648.t1|Name=Gvermi10648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=182bp|location=Sequence derived from alignment at ScGOVlb_9305:193..374+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GCAAACGGTGCTGATCACTTCACAGCGCCAGAGTTTCTTCCGGCGATCGa
ttttcatttgtaatctgtcagttagttttcaaccaaatcacttagagaag
tattcacagatgcaggtgtcgaagacgaatatcaattctgaccattaact
tccatgcacgcagcattcgacaccatgaatga
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Coding sequence (CDS) from alignment at ScGOVlb_9305:193..374+

>Gvermi10648.t1 ID=Gvermi10648.t1|Name=Gvermi10648.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=85bp|location=Sequence derived from alignment at ScGOVlb_9305:193..374+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GCAAACGGTGCTGATCACTTCACAGCGCCAGAGTTTCTTCCGGCGATCGa
ttttcatttgtaatctcattcgacaccatgaatga
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