Gvermi10613.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10613.t1
Unique NameGvermi10613.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length385
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3776contigScGOVlb_3776:1..1153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_001414-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue5.55e-111
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10613Gvermi10613Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3776 1..1153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10613.t1.CDS1Gvermi10613.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3776 1..1153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10613.t1.exon1Gvermi10613.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3776 1..1153 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10613.t1.start1Gvermi10613.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3776 1151..1153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10613.t1Gvermi10613.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3776 1..1153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10613.t1 ID=Gvermi10613.t1|Name=Gvermi10613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=385bp
MLRAGVIEPAQSPWASPVVLAPKADGSWRFCIDYRKLNAATVKDVYPIPR
MDECIDSLGEAKVFTTLDANSGYWQVPLRAEDRDKTAFVCHQGLYRFNRM
PFGLTNAPATFQRAVDILLARFKWKTCLVYLDDVIVYSSNLDEHLAHVRD
VMRTLRDAGITLKLKKCEFFTDTVKYLGHVIRPGRLAIDEVRVKCLKEAK
HPRNQTELRSFLGLCNVYRRFIPNFADIAAPLNELLRKGQPVTLEEFDDR
KSTAFSALVEAVTSPPVLSLPRAGLPYAVDTDASDYQVGCALFQTTESGD
RLPIGYWSRSLNVHERNYSVSEKECLAVVWALQTLRPYLMGNHFEVYTDH
SALRWLLSIAEPSGRLMRWRLRLAEFDFEMKYKKX
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spliced messenger RNA

>Gvermi10613.t1 ID=Gvermi10613.t1|Name=Gvermi10613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1153bp|location=Sequence derived from alignment at ScGOVlb_3776:1..1153- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCGAGCCGGAGTTATTGAACCAGCCCAGTCACCGTGGGCCTCACC
TGTGGTGCTCGCTCCCAAAGCTGATGGGTCTTGGCGATTTTGTATCGACT
ACCGCAAGTTGAATGCGGCTACGGTGAAGGATGTCTATCCCATCCCACGA
ATGGATGAATGCATCGATTCATTGGGCGAAGCGAAAGTTTTCACGACCCT
CGACGCTAATTCGGGCTATTGGCAAGTCCCTCTTAGGGCTGAGGACCGTG
ACAAGACGGCTTTTGTATGCCATCAAGGCCTCTACCGATTCAATCGGATG
CCCTTTGGGTTAACTAACGCGCCAGCCACATTTCAACGCGCTGTGGACAT
TTTGCTCGCCCGCTTCAAGTGGAAGACCTGCCTGGTTTACCTGGACGATG
TTATCGTTTATTCCAGCAACCTGGACGAGCACCTGGCCCACGTACGGGAT
GTTATGCGAACGTTACGCGATGCAGGCATCACCCTGAAGCTCAAGAAGTG
TGAGTTCTTTACCGACACTGTGAAATATCTCGGGCATGTCATCCGTCCTG
GACGGCTTGCAATTGATGAAGTACGAGTGAAGTGCCTCAAGGAGGCCAAA
CACCCGCGGAATCAGACGGAACTCCGATCATTTCTCGGCCTATGTAATGT
TTATCGCCGCTTCATCCCGAACTTTGCGGATATTGCAGCACCGCTGAATG
AACTCCTTCGAAAAGGCCAGCCAGTTACTCTGGAAGAGTTTGATGACCGG
AAGTCAACGGCATTCTCAGCACTCGTTGAGGCAGTGACATCACCACCGGT
GCTATCCCTACCAAGGGCCGGATTGCCATACGCCGTTGACACGGATGCGA
GCGACTATCAGGTCGGCTGCGCCTTGTTCCAAACCACAGAGAGTGGAGAT
CGATTGCCAATTGGATATTGGTCAAGAAGCCTCAACGTTCACGAGAGGAA
TTACTCTGTCTCAGAGAAAGAATGTCTGGCAGTGGTCTGGGCCCTCCAGA
CCCTGCGCCCCTACCTGATGGGGAATCATTTCGAAGTCTACACCGATCAC
TCGGCTTTGCGCTGGCTACTCTCCATAGCGGAGCCATCTGGCCGCCTGAT
GAGGTGGAGGCTGCGCTTGGCAGAATTTGACTTCGAGATGAAGTATAAAA
AGG
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protein sequence of Gvermi10613.t1

>Gvermi10613.t1 ID=Gvermi10613.t1|Name=Gvermi10613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=385bp
MLRAGVIEPAQSPWASPVVLAPKADGSWRFCIDYRKLNAATVKDVYPIPR
MDECIDSLGEAKVFTTLDANSGYWQVPLRAEDRDKTAFVCHQGLYRFNRM
PFGLTNAPATFQRAVDILLARFKWKTCLVYLDDVIVYSSNLDEHLAHVRD
VMRTLRDAGITLKLKKCEFFTDTVKYLGHVIRPGRLAIDEVRVKCLKEAK
HPRNQTELRSFLGLCNVYRRFIPNFADIAAPLNELLRKGQPVTLEEFDDR
KSTAFSALVEAVTSPPVLSLPRAGLPYAVDTDASDYQVGCALFQTTESGD
RLPIGYWSRSLNVHERNYSVSEKECLAVVWALQTLRPYLMGNHFEVYTDH
SALRWLLSIAEPSGRLMRWRLRLAEFDFEMKYKKX
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mRNA from alignment at ScGOVlb_3776:1..1153-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10613.t1 ID=Gvermi10613.t1|Name=Gvermi10613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1153bp|location=Sequence derived from alignment at ScGOVlb_3776:1..1153- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCGAGCCGGAGTTATTGAACCAGCCCAGTCACCGTGGGCCTCACC
TGTGGTGCTCGCTCCCAAAGCTGATGGGTCTTGGCGATTTTGTATCGACT
ACCGCAAGTTGAATGCGGCTACGGTGAAGGATGTCTATCCCATCCCACGA
ATGGATGAATGCATCGATTCATTGGGCGAAGCGAAAGTTTTCACGACCCT
CGACGCTAATTCGGGCTATTGGCAAGTCCCTCTTAGGGCTGAGGACCGTG
ACAAGACGGCTTTTGTATGCCATCAAGGCCTCTACCGATTCAATCGGATG
CCCTTTGGGTTAACTAACGCGCCAGCCACATTTCAACGCGCTGTGGACAT
TTTGCTCGCCCGCTTCAAGTGGAAGACCTGCCTGGTTTACCTGGACGATG
TTATCGTTTATTCCAGCAACCTGGACGAGCACCTGGCCCACGTACGGGAT
GTTATGCGAACGTTACGCGATGCAGGCATCACCCTGAAGCTCAAGAAGTG
TGAGTTCTTTACCGACACTGTGAAATATCTCGGGCATGTCATCCGTCCTG
GACGGCTTGCAATTGATGAAGTACGAGTGAAGTGCCTCAAGGAGGCCAAA
CACCCGCGGAATCAGACGGAACTCCGATCATTTCTCGGCCTATGTAATGT
TTATCGCCGCTTCATCCCGAACTTTGCGGATATTGCAGCACCGCTGAATG
AACTCCTTCGAAAAGGCCAGCCAGTTACTCTGGAAGAGTTTGATGACCGG
AAGTCAACGGCATTCTCAGCACTCGTTGAGGCAGTGACATCACCACCGGT
GCTATCCCTACCAAGGGCCGGATTGCCATACGCCGTTGACACGGATGCGA
GCGACTATCAGGTCGGCTGCGCCTTGTTCCAAACCACAGAGAGTGGAGAT
CGATTGCCAATTGGATATTGGTCAAGAAGCCTCAACGTTCACGAGAGGAA
TTACTCTGTCTCAGAGAAAGAATGTCTGGCAGTGGTCTGGGCCCTCCAGA
CCCTGCGCCCCTACCTGATGGGGAATCATTTCGAAGTCTACACCGATCAC
TCGGCTTTGCGCTGGCTACTCTCCATAGCGGAGCCATCTGGCCGCCTGAT
GAGGTGGAGGCTGCGCTTGGCAGAATTTGACTTCGAGATGAAGTATAAAA
AGG
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Coding sequence (CDS) from alignment at ScGOVlb_3776:1..1153-

>Gvermi10613.t1 ID=Gvermi10613.t1|Name=Gvermi10613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1153bp|location=Sequence derived from alignment at ScGOVlb_3776:1..1153- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCGAGCCGGAGTTATTGAACCAGCCCAGTCACCGTGGGCCTCACC
TGTGGTGCTCGCTCCCAAAGCTGATGGGTCTTGGCGATTTTGTATCGACT
ACCGCAAGTTGAATGCGGCTACGGTGAAGGATGTCTATCCCATCCCACGA
ATGGATGAATGCATCGATTCATTGGGCGAAGCGAAAGTTTTCACGACCCT
CGACGCTAATTCGGGCTATTGGCAAGTCCCTCTTAGGGCTGAGGACCGTG
ACAAGACGGCTTTTGTATGCCATCAAGGCCTCTACCGATTCAATCGGATG
CCCTTTGGGTTAACTAACGCGCCAGCCACATTTCAACGCGCTGTGGACAT
TTTGCTCGCCCGCTTCAAGTGGAAGACCTGCCTGGTTTACCTGGACGATG
TTATCGTTTATTCCAGCAACCTGGACGAGCACCTGGCCCACGTACGGGAT
GTTATGCGAACGTTACGCGATGCAGGCATCACCCTGAAGCTCAAGAAGTG
TGAGTTCTTTACCGACACTGTGAAATATCTCGGGCATGTCATCCGTCCTG
GACGGCTTGCAATTGATGAAGTACGAGTGAAGTGCCTCAAGGAGGCCAAA
CACCCGCGGAATCAGACGGAACTCCGATCATTTCTCGGCCTATGTAATGT
TTATCGCCGCTTCATCCCGAACTTTGCGGATATTGCAGCACCGCTGAATG
AACTCCTTCGAAAAGGCCAGCCAGTTACTCTGGAAGAGTTTGATGACCGG
AAGTCAACGGCATTCTCAGCACTCGTTGAGGCAGTGACATCACCACCGGT
GCTATCCCTACCAAGGGCCGGATTGCCATACGCCGTTGACACGGATGCGA
GCGACTATCAGGTCGGCTGCGCCTTGTTCCAAACCACAGAGAGTGGAGAT
CGATTGCCAATTGGATATTGGTCAAGAAGCCTCAACGTTCACGAGAGGAA
TTACTCTGTCTCAGAGAAAGAATGTCTGGCAGTGGTCTGGGCCCTCCAGA
CCCTGCGCCCCTACCTGATGGGGAATCATTTCGAAGTCTACACCGATCAC
TCGGCTTTGCGCTGGCTACTCTCCATAGCGGAGCCATCTGGCCGCCTGAT
GAGGTGGAGGCTGCGCTTGGCAGAATTTGACTTCGAGATGAAGTATAAAA
AGG
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