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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2850.Phatr40219 |
| Max annot lvl | 2836|Bacillariophyta |
| Evalue | 5.33e-57 |
| EggNOG OGs | 2CP1I@1|root,2QZCH@2759|Eukaryota,2XHH6@2836|Bacillariophyta |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi10579.t1 ID=Gvermi10579.t1|Name=Gvermi10579.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=883bp MPVDPNGATDSNWSESSHASNKCAEKHFFSFLIRKEFPANPGLKQALFGN LEPEEGSEEATFEYLDRQRKLRLITFTELNRFARYLATEAKNRSNNRDSL KWESASRYLSSTKERLVHACFDDDAPSPLSDAGKMRSIRRGMLTIIVKRH RELREPLSKSHSQANRADLMKIVMVCFWSGQPQFAGFSCFILALYYFTAR GHECSEMRFREMGMFVPPEFQSNGTDDQDAIIRAYFFRDKNYKEQELHVF PDCTSLFMDWYFALAYSMVMHCNVPSETVFPEFRSRHTTDASAGGNNNND NEFFEEEDDNDEGGNTGNSTNNSNSRRANDGPSKVFNDHMKNLSRIVEGF EQQINQDGVVTADDVGDGEDGSNLHQQQNQAMSSTAMTECLQYVARSCGV GVDSLLPNSNITSHSPKRGSINQAHNHPSIKSAWVCLSAGWLMKAVHTIF DYLDISPAEERQVARAKANWNSTDTNNSLGGGHPPTLAALREHRFGADDS HSSFAVATEFSRRLFVGYGEVQGANSIQFQQCLTASILRHLRTYVQHLLM HPLAEFGSTRNDCFQVSPFLCHLLFALDQSFCTHGVFGFDQPNAIEILYT WSEEIDKAFVLRNFMYVPASVLREQLESPNILEGERSLLNDVFSLDTRPL AAHLHGNKRIALGLQRQLVDTNSNLVQLREAVRQNQIITTQLVDQVSRLD TKLEMGLQQIMQRLDGGETVTQITVGQNGAAVADPVAGPSYGGGPTMGIS ILPLRLSGLQLPALLVSWHVQCYYSQSPQGQAKQTRKTFSVVRFCVSYLS LFLPQQVPQLPDGAHTPSDPNTEQWRADLSRLAGHAWMEFGRLWQRSXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR* back to topspliced messenger RNA >Gvermi10579.t1 ID=Gvermi10579.t1|Name=Gvermi10579.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2649bp|location=Sequence derived from alignment at ScGOVlb_16:418416..421064- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCAGTCGATCCCAATGGAGCCACTGACTCCAATTGGAGCGAGTCTTC TCATGCTTCAAACAAGTGTGCTGAGAAGCACTTCTTTTCCTTCCTTATAA GGAAGGAATTTCCAGCAAATCCTGGATTAAAGCAAGCCCTCTTTGGCAAT TTGGAGCCTGAAGAAGGCAGCGAAGAAGCAACATTTGAGTACCTCGACCG CCAACGCAAGTTACGCTTGATAACATTCACGGAGTTGAACAGATTTGCAA GATATTTGGCAACAGAGGCCAAGAATCGTAGCAACAATCGCGACTCATTG AAGTGGGAGTCTGCCAGCCGTTATCTGAGCTCCACAAAGGAGCGGTTAGT ACACGCATGTTTTGACGACGATGCACCGAGTCCGCTCTCTGACGCAGGAA AGATGCGCAGCATTAGACGGGGAATGCTCACTATTATTGTAAAGCGACAC CGAGAATTGCGAGAACCTCTGTCGAAATCTCACAGCCAAGCCAACCGTGC TGACCTTATGAAGATTGTGATGGTATGCTTCTGGTCAGGCCAGCCCCAGT TTGCTGGCTTTTCCTGTTTCATTCTTGCTTTATACTACTTCACAGCGCGA GGTCACGAATGCTCGGAGATGCGATTCAGAGAAATGGGGATGTTTGTTCC ACCTGAATTCCAGTCCAATGGCACAGATGATCAAGATGCCATCATTCGTG CATATTTCTTTCGCGACAAGAACTACAAAGAGCAAGAGCTTCACGTCTTC CCCGATTGTACAAGCCTTTTCATGGATTGGTATTTTGCTCTTGCATATAG CATGGTTATGCACTGTAATGTGCCGTCTGAGACAGTTTTCCCTGAATTTC GCAGCCGTCACACGACGGACGCATCCGCTGGTGGCAACAACAACAATGAC AACGAGTTCTTTGAGGAAGAGGATGACAACGATGAAGGGGGAAACACTGG CAACAGCACTAACAATAGCAACTCGCGTCGCGCGAACGACGGTCCGTCAA AAGTTTTCAACGACCACATGAAGAATCTAAGCAGGATTGTCGAAGGATTC GAACAACAGATTAATCAAGACGGAGTTGTTACTGCAGACGATGTCGGTGA CGGCGAAGATGGAAGCAACCTTCATCAACAGCAGAATCAAGCAATGTCAT CGACTGCAATGACAGAATGCTTACAATATGTTGCTCGTTCATGTGGTGTT GGAGTGGATTCGCTGTTGCCCAACAGCAACATTACAAGCCACTCTCCGAA ACGAGGAAGTATTAATCAAGCTCACAATCATCCATCCATCAAATCAGCTT GGGTCTGTCTCAGTGCAGGGTGGCTAATGAAAGCAGTTCATACAATATTT GATTACTTGGATATTTCACCAGCAGAAGAGCGACAAGTGGCCAGGGCCAA AGCTAACTGGAATTCGACAGACACTAACAACAGCCTCGGAGGCGGCCACC CACCTACACTGGCAGCCCTTCGTGAACACAGGTTTGGAGCAGACGACTCG CATTCGTCTTTTGCCGTTGCAACAGAGTTTTCGCGACGGCTTTTTGTTGG CTATGGTGAAGTTCAGGGTGCCAACAGTATTCAATTTCAGCAATGCCTAA CAGCTTCCATCCTCCGACACTTACGAACTTACGTCCAGCACCTACTGATG CATCCTCTTGCAGAGTTCGGATCCACACGCAATGATTGTTTTCAGGTATC ACCATTTCTTTGCCATCTGTTGTTCGCGTTGGATCAATCCTTTTGTACAC ATGGAGTTTTTGGATTCGATCAACCCAATGCCATAGAAATCTTGTACACT TGGAGCGAAGAAATTGACAAAGCATTCGTTCTTCGCAACTTCATGTATGT TCCAGCCAGTGTACTTCGCGAACAGCTGGAGTCACCAAACATTTTGGAAG GGGAACGGTCTCTCCTAAACGATGTCTTCAGCCTTGACACAAGACCATTG GCTGCTCACTTGCATGGAAACAAACGGATCGCATTGGGATTGCAGCGACA ACTAGTTGACACAAATAGTAACCTTGTTCAACTGAGGGAAGCTGTTCGGC AGAATCAAATCATCACTACTCAACTCGTTGATCAGGTTTCCAGGTTGGAT ACGAAGCTTGAAATGGGTCTCCAACAAATAATGCAGAGACTCGACGGCGG CGAAACGGTCACTCAAATTACCGTTGGCCAGAATGGTGCTGCTGTCGCGG ACCCAGTGGCAGGTCCTTCCTATGGTGGAGGGCCCACCATGGGAATATCC ATCCTTCCCTTGCGATTGAGCGGATTGCAATTGCCTGCATTGCTCGTGTC ATGGCACGTCCAGTGCTACTATTCGCAAAGTCCTCAAGGTCAAGCAAAGC AAACTCGGAAGACATTTTCCGTTGTGCGTTTCTGTGTTTCGTATCTCTCC TTGTTCCTTCCACAACAAGTTCCTCAATTACCCGATGGTGCCCATACTCC AAGTGATCCAAACACAGAGCAATGGAGGGCCGACTTAAGCCGTTTAGCTG GGCATGCTTGGATGGAGTTTGGGAGATTGTGGCAACGTAGTAGNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTAG back to topprotein sequence of Gvermi10579.t1 >Gvermi10579.t1 ID=Gvermi10579.t1|Name=Gvermi10579.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=883bp
MPVDPNGATDSNWSESSHASNKCAEKHFFSFLIRKEFPANPGLKQALFGN LEPEEGSEEATFEYLDRQRKLRLITFTELNRFARYLATEAKNRSNNRDSL KWESASRYLSSTKERLVHACFDDDAPSPLSDAGKMRSIRRGMLTIIVKRH RELREPLSKSHSQANRADLMKIVMVCFWSGQPQFAGFSCFILALYYFTAR GHECSEMRFREMGMFVPPEFQSNGTDDQDAIIRAYFFRDKNYKEQELHVF PDCTSLFMDWYFALAYSMVMHCNVPSETVFPEFRSRHTTDASAGGNNNND NEFFEEEDDNDEGGNTGNSTNNSNSRRANDGPSKVFNDHMKNLSRIVEGF EQQINQDGVVTADDVGDGEDGSNLHQQQNQAMSSTAMTECLQYVARSCGV GVDSLLPNSNITSHSPKRGSINQAHNHPSIKSAWVCLSAGWLMKAVHTIF DYLDISPAEERQVARAKANWNSTDTNNSLGGGHPPTLAALREHRFGADDS HSSFAVATEFSRRLFVGYGEVQGANSIQFQQCLTASILRHLRTYVQHLLM HPLAEFGSTRNDCFQVSPFLCHLLFALDQSFCTHGVFGFDQPNAIEILYT WSEEIDKAFVLRNFMYVPASVLREQLESPNILEGERSLLNDVFSLDTRPL AAHLHGNKRIALGLQRQLVDTNSNLVQLREAVRQNQIITTQLVDQVSRLD TKLEMGLQQIMQRLDGGETVTQITVGQNGAAVADPVAGPSYGGGPTMGIS ILPLRLSGLQLPALLVSWHVQCYYSQSPQGQAKQTRKTFSVVRFCVSYLS LFLPQQVPQLPDGAHTPSDPNTEQWRADLSRLAGHAWMEFGRLWQRSXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR* back to topmRNA from alignment at ScGOVlb_16:418416..421064- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi10579.t1 ID=Gvermi10579.t1|Name=Gvermi10579.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2649bp|location=Sequence derived from alignment at ScGOVlb_16:418416..421064- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCCAGTCGATCCCAATGGAGCCACTGACTCCAATTGGAGCGAGTCTTC
TCATGCTTCAAACAAGTGTGCTGAGAAGCACTTCTTTTCCTTCCTTATAA
GGAAGGAATTTCCAGCAAATCCTGGATTAAAGCAAGCCCTCTTTGGCAAT
TTGGAGCCTGAAGAAGGCAGCGAAGAAGCAACATTTGAGTACCTCGACCG
CCAACGCAAGTTACGCTTGATAACATTCACGGAGTTGAACAGATTTGCAA
GATATTTGGCAACAGAGGCCAAGAATCGTAGCAACAATCGCGACTCATTG
AAGTGGGAGTCTGCCAGCCGTTATCTGAGCTCCACAAAGGAGCGGTTAGT
ACACGCATGTTTTGACGACGATGCACCGAGTCCGCTCTCTGACGCAGGAA
AGATGCGCAGCATTAGACGGGGAATGCTCACTATTATTGTAAAGCGACAC
CGAGAATTGCGAGAACCTCTGTCGAAATCTCACAGCCAAGCCAACCGTGC
TGACCTTATGAAGATTGTGATGGTATGCTTCTGGTCAGGCCAGCCCCAGT
TTGCTGGCTTTTCCTGTTTCATTCTTGCTTTATACTACTTCACAGCGCGA
GGTCACGAATGCTCGGAGATGCGATTCAGAGAAATGGGGATGTTTGTTCC
ACCTGAATTCCAGTCCAATGGCACAGATGATCAAGATGCCATCATTCGTG
CATATTTCTTTCGCGACAAGAACTACAAAGAGCAAGAGCTTCACGTCTTC
CCCGATTGTACAAGCCTTTTCATGGATTGGTATTTTGCTCTTGCATATAG
CATGGTTATGCACTGTAATGTGCCGTCTGAGACAGTTTTCCCTGAATTTC
GCAGCCGTCACACGACGGACGCATCCGCTGGTGGCAACAACAACAATGAC
AACGAGTTCTTTGAGGAAGAGGATGACAACGATGAAGGGGGAAACACTGG
CAACAGCACTAACAATAGCAACTCGCGTCGCGCGAACGACGGTCCGTCAA
AAGTTTTCAACGACCACATGAAGAATCTAAGCAGGATTGTCGAAGGATTC
GAACAACAGATTAATCAAGACGGAGTTGTTACTGCAGACGATGTCGGTGA
CGGCGAAGATGGAAGCAACCTTCATCAACAGCAGAATCAAGCAATGTCAT
CGACTGCAATGACAGAATGCTTACAATATGTTGCTCGTTCATGTGGTGTT
GGAGTGGATTCGCTGTTGCCCAACAGCAACATTACAAGCCACTCTCCGAA
ACGAGGAAGTATTAATCAAGCTCACAATCATCCATCCATCAAATCAGCTT
GGGTCTGTCTCAGTGCAGGGTGGCTAATGAAAGCAGTTCATACAATATTT
GATTACTTGGATATTTCACCAGCAGAAGAGCGACAAGTGGCCAGGGCCAA
AGCTAACTGGAATTCGACAGACACTAACAACAGCCTCGGAGGCGGCCACC
CACCTACACTGGCAGCCCTTCGTGAACACAGGTTTGGAGCAGACGACTCG
CATTCGTCTTTTGCCGTTGCAACAGAGTTTTCGCGACGGCTTTTTGTTGG
CTATGGTGAAGTTCAGGGTGCCAACAGTATTCAATTTCAGCAATGCCTAA
CAGCTTCCATCCTCCGACACTTACGAACTTACGTCCAGCACCTACTGATG
CATCCTCTTGCAGAGTTCGGATCCACACGCAATGATTGTTTTCAGGTATC
ACCATTTCTTTGCCATCTGTTGTTCGCGTTGGATCAATCCTTTTGTACAC
ATGGAGTTTTTGGATTCGATCAACCCAATGCCATAGAAATCTTGTACACT
TGGAGCGAAGAAATTGACAAAGCATTCGTTCTTCGCAACTTCATGTATGT
TCCAGCCAGTGTACTTCGCGAACAGCTGGAGTCACCAAACATTTTGGAAG
GGGAACGGTCTCTCCTAAACGATGTCTTCAGCCTTGACACAAGACCATTG
GCTGCTCACTTGCATGGAAACAAACGGATCGCATTGGGATTGCAGCGACA
ACTAGTTGACACAAATAGTAACCTTGTTCAACTGAGGGAAGCTGTTCGGC
AGAATCAAATCATCACTACTCAACTCGTTGATCAGGTTTCCAGGTTGGAT
ACGAAGCTTGAAATGGGTCTCCAACAAATAATGCAGAGACTCGACGGCGG
CGAAACGGTCACTCAAATTACCGTTGGCCAGAATGGTGCTGCTGTCGCGG
ACCCAGTGGCAGGTCCTTCCTATGGTGGAGGGCCCACCATGGGAATATCC
ATCCTTCCCTTGCGATTGAGCGGATTGCAATTGCCTGCATTGCTCGTGTC
ATGGCACGTCCAGTGCTACTATTCGCAAAGTCCTCAAGGTCAAGCAAAGC
AAACTCGGAAGACATTTTCCGTTGTGCGTTTCTGTGTTTCGTATCTCTCC
TTGTTCCTTCCACAACAAGTTCCTCAATTACCCGATGGTGCCCATACTCC
AAGTGATCCAAACACAGAGCAATGGAGGGCCGACTTAAGCCGTTTAGCTG
GGCATGCTTGGATGGAGTTTGGGAGATTGTGGCAACGTAGTAGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTAG back to topCoding sequence (CDS) from alignment at ScGOVlb_16:418416..421064- >Gvermi10579.t1 ID=Gvermi10579.t1|Name=Gvermi10579.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2649bp|location=Sequence derived from alignment at ScGOVlb_16:418416..421064- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCCAGTCGATCCCAATGGAGCCACTGACTCCAATTGGAGCGAGTCTTC TCATGCTTCAAACAAGTGTGCTGAGAAGCACTTCTTTTCCTTCCTTATAA GGAAGGAATTTCCAGCAAATCCTGGATTAAAGCAAGCCCTCTTTGGCAAT TTGGAGCCTGAAGAAGGCAGCGAAGAAGCAACATTTGAGTACCTCGACCG CCAACGCAAGTTACGCTTGATAACATTCACGGAGTTGAACAGATTTGCAA GATATTTGGCAACAGAGGCCAAGAATCGTAGCAACAATCGCGACTCATTG AAGTGGGAGTCTGCCAGCCGTTATCTGAGCTCCACAAAGGAGCGGTTAGT ACACGCATGTTTTGACGACGATGCACCGAGTCCGCTCTCTGACGCAGGAA AGATGCGCAGCATTAGACGGGGAATGCTCACTATTATTGTAAAGCGACAC CGAGAATTGCGAGAACCTCTGTCGAAATCTCACAGCCAAGCCAACCGTGC TGACCTTATGAAGATTGTGATGGTATGCTTCTGGTCAGGCCAGCCCCAGT TTGCTGGCTTTTCCTGTTTCATTCTTGCTTTATACTACTTCACAGCGCGA GGTCACGAATGCTCGGAGATGCGATTCAGAGAAATGGGGATGTTTGTTCC ACCTGAATTCCAGTCCAATGGCACAGATGATCAAGATGCCATCATTCGTG CATATTTCTTTCGCGACAAGAACTACAAAGAGCAAGAGCTTCACGTCTTC CCCGATTGTACAAGCCTTTTCATGGATTGGTATTTTGCTCTTGCATATAG CATGGTTATGCACTGTAATGTGCCGTCTGAGACAGTTTTCCCTGAATTTC GCAGCCGTCACACGACGGACGCATCCGCTGGTGGCAACAACAACAATGAC AACGAGTTCTTTGAGGAAGAGGATGACAACGATGAAGGGGGAAACACTGG CAACAGCACTAACAATAGCAACTCGCGTCGCGCGAACGACGGTCCGTCAA AAGTTTTCAACGACCACATGAAGAATCTAAGCAGGATTGTCGAAGGATTC GAACAACAGATTAATCAAGACGGAGTTGTTACTGCAGACGATGTCGGTGA CGGCGAAGATGGAAGCAACCTTCATCAACAGCAGAATCAAGCAATGTCAT CGACTGCAATGACAGAATGCTTACAATATGTTGCTCGTTCATGTGGTGTT GGAGTGGATTCGCTGTTGCCCAACAGCAACATTACAAGCCACTCTCCGAA ACGAGGAAGTATTAATCAAGCTCACAATCATCCATCCATCAAATCAGCTT GGGTCTGTCTCAGTGCAGGGTGGCTAATGAAAGCAGTTCATACAATATTT GATTACTTGGATATTTCACCAGCAGAAGAGCGACAAGTGGCCAGGGCCAA AGCTAACTGGAATTCGACAGACACTAACAACAGCCTCGGAGGCGGCCACC CACCTACACTGGCAGCCCTTCGTGAACACAGGTTTGGAGCAGACGACTCG CATTCGTCTTTTGCCGTTGCAACAGAGTTTTCGCGACGGCTTTTTGTTGG CTATGGTGAAGTTCAGGGTGCCAACAGTATTCAATTTCAGCAATGCCTAA CAGCTTCCATCCTCCGACACTTACGAACTTACGTCCAGCACCTACTGATG CATCCTCTTGCAGAGTTCGGATCCACACGCAATGATTGTTTTCAGGTATC ACCATTTCTTTGCCATCTGTTGTTCGCGTTGGATCAATCCTTTTGTACAC ATGGAGTTTTTGGATTCGATCAACCCAATGCCATAGAAATCTTGTACACT TGGAGCGAAGAAATTGACAAAGCATTCGTTCTTCGCAACTTCATGTATGT TCCAGCCAGTGTACTTCGCGAACAGCTGGAGTCACCAAACATTTTGGAAG GGGAACGGTCTCTCCTAAACGATGTCTTCAGCCTTGACACAAGACCATTG GCTGCTCACTTGCATGGAAACAAACGGATCGCATTGGGATTGCAGCGACA ACTAGTTGACACAAATAGTAACCTTGTTCAACTGAGGGAAGCTGTTCGGC AGAATCAAATCATCACTACTCAACTCGTTGATCAGGTTTCCAGGTTGGAT ACGAAGCTTGAAATGGGTCTCCAACAAATAATGCAGAGACTCGACGGCGG CGAAACGGTCACTCAAATTACCGTTGGCCAGAATGGTGCTGCTGTCGCGG ACCCAGTGGCAGGTCCTTCCTATGGTGGAGGGCCCACCATGGGAATATCC ATCCTTCCCTTGCGATTGAGCGGATTGCAATTGCCTGCATTGCTCGTGTC ATGGCACGTCCAGTGCTACTATTCGCAAAGTCCTCAAGGTCAAGCAAAGC AAACTCGGAAGACATTTTCCGTTGTGCGTTTCTGTGTTTCGTATCTCTCC TTGTTCCTTCCACAACAAGTTCCTCAATTACCCGATGGTGCCCATACTCC AAGTGATCCAAACACAGAGCAATGGAGGGCCGACTTAAGCCGTTTAGCTG GGCATGCTTGGATGGAGTTTGGGAGATTGTGGCAACGTAGTAGNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTAG back to top
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