|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 35128.Thapsdraft1754 |
| PFAMs | RVT_2 |
| Max annot lvl | 2836|Bacillariophyta |
| Evalue | 1.34e-32 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,2XEDA@2836|Bacillariophyta |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi10565.t1 ID=Gvermi10565.t1|Name=Gvermi10565.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=605bp MGRPGMSKFAKAIENNYITDCPVTLEDVKRAEAIYGKDVAYLKGKTSASK AKDHVQDSSLVKLPAQLLEIHPNITMCCDVFYVHGLTFSLSISRNIRYIS CRKLINRTASAIKACLVKDCKMYSNRGFVPTNIHADLEYSPIKDDFKGIK FDICSADEHVGEAERAVRTIKDGVRATIHGLPYKRLPRELIRGIVTLSQK SANVFPHPDGISDSMSPETIATGLPKPNYRKLRIDLGAYAQVYDGTSNDT KSRTLGAIALNPTDSMSGDYVFMSLTTGETITRTSWTPLPISDLVITQVK AIAENKGMPLVGAGTLITEYNPDGTGDASDYDKDYALPDTADRASDHEMT TDAYATSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLVDRGL AEYENGDVDSDDKNDDDDEEEEPPKRRAGLRQKKERKYNWRYGFPQFDYS SMPTPKQQKSKPIDVPNTEQDHIRKAITGLMFTQMEPPTDNDIAEELRIV EAGLARLTLRVTELRERREGRERQQRDRPRQLEVGQRVLIARTNVFLPAR RVEGTVVGFTAQRVRVSYTNAEGATVIALRAAHNLTPVQPRNVRPEPANS GAQR* back to topspliced messenger RNA >Gvermi10565.t1 ID=Gvermi10565.t1|Name=Gvermi10565.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at ScGOVlb_16:363282..368083- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGACGGCCCGGCATGAGCAAATTCGCCAAAGCAATAGAAAATAACTA CATCACCGATTGCCCAGTGACTTTGGAAGATGTGAAGCGGGCGGAAGCTA TCTACGGAAAGGACGTAGCATATTTGAAAGGGAAGACATCGGCAAGCAAA GCCAAAGATCACGTGCAGGACTCCTCTCTCGTAAAACTACCCGCGCAACT CTTAGAAATCCATCCAAACATCACAATGTGCTGTGATGTCTTCTACGTAC ACGGTTTGACTTTCTCCCTCTCGATATCGCGCAACATACGGTACATTTCA TGCCGGAAGCTGATCAACCGTACGGCCTCTGCTATCAAAGCATGCCTGGT CAAGGACTGCAAAATGTATAGCAACCGCGGATTCGTCCCAACCAACATCC ACGCCGACCTGGAGTACTCCCCCATCAAGGACGACTTTAAAGGCATCAAA TTCGACATCTGCTCGGCGGATGAGCATGTTGGGGAAGCGGAGCGAGCAGT CAGAACCATCAAAGACGGAGTACGCGCAACTATCCACGGATTACCGTACA AGAGGCTACCAAGAGAACTAATTCGCGGCATTGTAACCCTCTCCCAGAAG TCCGCCAACGTCTTCCCGCATCCAGACGGAATCAGCGACTCCATGTCGCC CGAAACAATCGCGACCGGACTCCCTAAGCCAAACTACCGAAAACTACGCA TCGATCTGGGGGCCTACGCCCAAGTCTACGACGGAACATCCAACGACACC AAATCCCGGACATTAGGAGCGATTGCGCTAAACCCGACGGACAGCATGAG CGGAGACTACGTATTCATGTCACTTACCACCGGAGAAACCATCACCAGAA CCTCATGGACGCCACTGCCAATTTCGGATCTTGTCATCACCCAAGTCAAA GCCATCGCAGAGAACAAAGGCATGCCCTTGGTTGGAGCCGGAACTCTCAT CACCGAGTACAACCCAGACGGAACTGGGGATGCATCGGACTATGACAAAG ACTACGCACTGCCAGACACTGCGGACCGCGCTTCCGACCATGAAATGACC ACAGACGCATACGCCACATCTGACGGNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACTAGTCGACAGAGGACTC GCCGAGTACGAGAACGGAGACGTCGACAGCGATGACAAAAATGATGACGA TGACGAAGAGGAGGAACCACCGAAGCGTCGAGCCGGATTACGACAAAAGA AAGAAAGAAAGTACAACTGGCGTTACGGCTTCCCACAGTTCGATTATTCA AGCATGCCAACTCCAAAACAACAGAAGAGCAAGCCGATCGACGTCCCGAA CACCGAGCAGGACCACATTCGCAAGGCCATCACGGGCCTCATGTTCACCC AAATGGAGCCCCCGACAGACAACGACATCGCCGAAGAGCTACGGATTGTC GAAGCAGGACTCGCCCGCCTCACCCTACGCGTTACGGAACTACGAGAACG AAGAGAAGGAAGGGAGCGACAGCAACGCGACCGCCCCAGGCAACTAGAAG TTGGCCAACGAGTGCTGATCGCGAGGACCAACGTATTCCTCCCCGCAAGA AGAGTAGAAGGAACAGTCGTCGGATTCACAGCACAACGAGTGAGAGTCAG CTACACTAACGCAGAAGGAGCCACTGTCATCGCCCTACGAGCAGCCCACA ACCTCACGCCCGTCCAGCCACGAAATGTCCGACCAGAACCCGCCAACAGC GGTGCCCAGCGCTAG back to topprotein sequence of Gvermi10565.t1 >Gvermi10565.t1 ID=Gvermi10565.t1|Name=Gvermi10565.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=605bp
MGRPGMSKFAKAIENNYITDCPVTLEDVKRAEAIYGKDVAYLKGKTSASK AKDHVQDSSLVKLPAQLLEIHPNITMCCDVFYVHGLTFSLSISRNIRYIS CRKLINRTASAIKACLVKDCKMYSNRGFVPTNIHADLEYSPIKDDFKGIK FDICSADEHVGEAERAVRTIKDGVRATIHGLPYKRLPRELIRGIVTLSQK SANVFPHPDGISDSMSPETIATGLPKPNYRKLRIDLGAYAQVYDGTSNDT KSRTLGAIALNPTDSMSGDYVFMSLTTGETITRTSWTPLPISDLVITQVK AIAENKGMPLVGAGTLITEYNPDGTGDASDYDKDYALPDTADRASDHEMT TDAYATSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLVDRGL AEYENGDVDSDDKNDDDDEEEEPPKRRAGLRQKKERKYNWRYGFPQFDYS SMPTPKQQKSKPIDVPNTEQDHIRKAITGLMFTQMEPPTDNDIAEELRIV EAGLARLTLRVTELRERREGRERQQRDRPRQLEVGQRVLIARTNVFLPAR RVEGTVVGFTAQRVRVSYTNAEGATVIALRAAHNLTPVQPRNVRPEPANS GAQR* back to topmRNA from alignment at ScGOVlb_16:363282..368083- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi10565.t1 ID=Gvermi10565.t1|Name=Gvermi10565.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4802bp|location=Sequence derived from alignment at ScGOVlb_16:363282..368083- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGGACGGCCCGGCATGAGCAAATTCGCCAAAGCAATAGAAAATAACTA
CATCACCGATTGCCCAGTGACTTTGGAAGATGTGAAGCGGGCGGAAGCTA
TCTACGGAAAGGACGTAGCATATTTGAAAGGGAAGACATCGGCAAGCAAA
GCCAAAGATCACGTGCAGGACTCCTCTCTCGTAAAACTACCCGCGCAACT
CTTAGAAATCCATCCAAACATCACAATGTGCTGTGATGTCTTCTACGTAC
ACGGTTTGACTTTCTCCCTCTCGATATCGCGCAACATACGGTACATTTCA
TGCCGGAAGCTGATCAACCGTACGGCCTCTGCTATCAAAGCATGCCTGGT
CAAGGACTGCAAAATGTATAGCAACCGCGGATTCGTCCCAACCAACATCC
ACGCCGACCTGGAGTACTCCCCCATCAAGGACGACTTTAAAGGCATCAAA
TTCGACATCTGCTCGGCGGATGAGCATGTTGGGGAAGCGGAGCGAGCAGT
CAGAACCATCAAAGACGGAGTACGCGCAACTATCCACGGATTACCGTACA
AGAGGCTACCAAGAGAACTAATTCGCGGCATTGTAACCCTCTCCCAGAAG
TCCGCCAACGTCTTCCCGCATCCAGACGGAATCAGCGACTCCATGTCGCC
CGAAACAATCGCGACCGGACTCCCTAAGCCAAACTACCGAAAACTACGCA
TCGATCTGGGGGCCTACGCCCAAGTCTACGACGGAACATCCAACGACACC
AAATCCCGGACATTAGGAGCGATTGCGCTAAACCCGACGGACAGCATGAG
CGGAGACTACGTATTCATGTCACTTACCACCGGAGAAACCATCACCAGAA
CCTCATGGACGCCACTGCCAATTTCGGATCTTGTCATCACCCAAGTCAAA
GCCATCGCAGAGAACAAAGGCATGCCCTTGGTTGGAGCCGGAACTCTCAT
CACCGAGTACAACCCAGACGGAACTGGGGATGCATCGGACTATGACAAAG
ACTACGCACTGCCAGACACTGCGGACCGCGCTTCCGACCATGAAATGACC
ACAGACGCATACGCCACATCTGACGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACTAGTCGACAGAGGACTC
GCCGAGTACGAGAACGGAGACGTCGACAGCGATGACAAAAATGATGACGA
TGACGAAGAGGAGGAACCACCGAAGCGTCGAGCCGGATTACGACAAAAGA
AAGAAAGAAAGTACAACTGGCGTTACGGCTTCCCACAGTTCGATTATTCA
AGCATGCCAACTCCAAAACAACAGAAGAGCAAGCCGATCGACGTCCCGAA
CACCGAGCAGGACCACATTCGCAAGGCCATCACGGGCCTCATGTTCACCC
AAATGTCGGCACAGAAAGGCCTAAAGAAACACGGGGACGTAGCATGGCAA
GCACTCAAAAAGGAGTTTAATCAATTCAAAACCATGGACGTCCTAGAAGT
ACTCGACCCACACAAACTCACCGCAGAACAAAAGCAGGAAGCACTCGCGG
CCATCAGTGTCATCAAAGAGAAGCGATGTGGAAAGATCAAAGGACGCACT
GTCGGCGACGGCCGAGCCCAGCGCGGCAAATACTCAAAAGCAGAAACCTC
ATCACCCACAGTGTCGAACGACACCCTTTTTATGCAAGTGATCATCAACG
CACACGAGAAACGCGACGTCGCCACAGCCGACATCACCGGTGCCTACCTC
CACGCAGAAATGAGAGACTTCGTTGCCCTACGATTCACTGGCTGGGCAGT
GGACCTACTATGTGAGATCAACCCGGAATACTCCCCACACGTCACATACG
AAGGCAAAACCAAAGTACTATACGTTCGCGCCAACAAGGCAATCTACGGA
TGCGTCATGAGCGGACTCCTTTGGTACGAACTATTCACCTCCACCCTCAA
GGACCTCGGTTTCGAAATCAATCCCTACGACACCTGCGTGGCAAACGCTA
CCATAGAAGGATCCCAATGCACCATCGTGTGGTACGTAGACGACACACAC
ATGTCGCACGCCAAATCTACAGTTATCGATTGGCTCGTTGACAAAATTGA
AGATAAATATGGAAAAATGACAGTCACTCGCGGCAAAACACACAACTTCC
TAGGCATGGACATCACATACAACGAGAACGGAACCGCATCGGTCATCATG
CAACAACACCTCGAAAAATGCATTGCCGAATCTGGAATCATAATCACTCG
AAGCCCACCAACTCCAGCCAGCTCCTCCATATTCCACGTCGATTCCAACG
CAGCACACCTCACCCGTCTCACTGCGGAACAATTCCACCGGACCGTTGCC
CAACTATTATACGTCGCCATGCGCGCACACCCCAACATCCTACTACCCGT
ATGCTTCCTCTGCAGCAGAGTCAAACACCCGACTGAGGAAGATCTCCACA
AACTTGGCCGCGTCATCGCCTACATAGCTCACACAAAGGACCTGCCCCTC
ATCCTTGGAGCAGACTCCCTACACAAAATCTATACATGGGTGGATGCCTC
GTATGCTCCCCATGACGATATGCGAAGCCACACCGGTGGTGTCATTTCTT
TTGGTTTCGGCGGACTCATGTGCAAATCTGGAAAACAAACCATCAACGCC
AAAAGCTCTACTGAGGCCGAGATCATCGGCGCGAGCGACTATCTCCCTAA
CTCTATGTTTGCCACATACTTCATGGAAGCCCAAGGTTACAACAACGAAG
AAAGCCCGTTCAACCAAGACAACACAAGTACGATCAACATGGCTACCAAT
GGTAAATCTTCCGCCGGGCGACGATCTCGCCACATCAACATCCGATACTT
CTTTATCGCCGACGTTCACAAGCGCGGCGACATCCAAATCCAACATTGTC
CCACCGAAGAAATGTTGGCCGACTTTCTAACTAAGCCCCTACAAGGAACT
CTCTTCCGTAAGTTTCGGGCTGTCCTCCTCGGCCATGAGCACATTAGCAC
ACTCAAGACCCACAAAACACCGCCCGAGGAGCGTGTTGGAATTCAAGCTC
CAGTAGACCCAGTAGAACCAGTATCGCCTACGATCACGACACAAACCATG
ACACAAACTACACTATCTGACAAGAATCTAATCTCCACTAACACCGATAC
GCTGTACACTACTGACGATTCAAGACGGACCTATGCGACAGCTGTCCGAT
CCTCAAAGCCACCCATTTCAGATCAACCCCAGAGCCACCCAAAGGTCGCT
CTGACGAAGCTCAACAAGTAAGGTAGAATCAAGGCCTTCCAATCACTTTT
TGGAAAGTCTCCCGTAAGCCGCTAGATACTTGTCTTATTGCTTGATCTCC
GGCCTGTCCAAATCCTTTGTCCATCCCATCGTAGTGTAGTGTCGAGCTTA
TTGCCGATCCCTACAGGTGTGAGACGTGCATTTCTAACACAAGATACTCG
ATGCAAGCAATCGCTTTATAACTTGGGAAGATCAGATCATCTTGTTGATT
CTAAAACAAGCGGGACAATTCCGAATGCAGCAATTACATATTGTCCCCTG
CCACCCACCGCGGCAATTTTTTCATGCTGTGAGTGGCAAATAGACTGCTA
TGATACGGTACCTGGTAGTCGTGCCGACCGATTTCATCTTCTTCTTCTTC
TTTTATTACCTGAAACAAAAATCAAAGTTCGGTTGAACCATACCGGTGTG
TGTCCCTGATTTGCAATTTCTTCTCAGCTTCCGACATCCTGCAAGAGTTT
GATTCCCCACGACTGTTCTCATTCCTTCTGGTAAGGATTCGACTCTGCGA
GGAGATGTTGGCATTCGTTGAGGTGGGACGTTGCTTGCATACAACGCAAA
TGAGCAGACCATGAGGATGATACGCACTTGGACAATTTTTCGCAGGCATT
GTGATAACGGCTATTTTCGGGTAAACAACCATTGTCGGCAACACGCGTGG
TAACAACATTGTCGCTACATCTGCTGGAGGGGAGTAGACTGTGGAAACTT
TGATTGCCGACATTGATGATCTAGATCACATTGTGGGATATAAAAGAGCT
CTCCCTTTCTTCTGGGGCCAATGTCAATACATCCGCCATTCGCAAGTACG
AAAACGAACAGTCGACGAAGTTTGCAACCGGAGACGGCCTGCATCGTCCC
AATGGATTTAAATTCTACGAGAATTGTCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCTACAGGTGTGAGACGTG
CATTTCTAACAGACTTTCCAAAAAGGATTATTTTTAACAGAACTACCAAC
ACTGATCGCGAAGCCACTCGATCCCGTCAATATATGAGCAGGGAGCCCCC
GACAGACAACGACATCGCCGAAGAGCTACGGATTGTCGAAGCAGGACTCG
CCCGCCTCACCCTACGCGTTACGGAACTACGAGAACGAAGAGAAGGAAGG
GAGCGACAGCAACGCGACCGCCCCAGGCAACTAGAAGTTGGCCAACGAGT
GCTGATCGCGAGGACCAACGTATTCCTCCCCGCAAGAAGAGTAGAAGGAA
CAGTCGTCGGATTCACAGCACAACGAGTGAGAGTCAGCTACACTAACGCA
GAAGGAGCCACTGTCATCGCCCTACGAGCAGCCCACAACCTCACGCCCGT
CCAGCCACGAAATGTCCGACCAGAACCCGCCAACAGCGGTGCCCAGCGCT
AG back to topCoding sequence (CDS) from alignment at ScGOVlb_16:363282..368083- >Gvermi10565.t1 ID=Gvermi10565.t1|Name=Gvermi10565.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1815bp|location=Sequence derived from alignment at ScGOVlb_16:363282..368083- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGGACGGCCCGGCATGAGCAAATTCGCCAAAGCAATAGAAAATAACTA CATCACCGATTGCCCAGTGACTTTGGAAGATGTGAAGCGGGCGGAAGCTA TCTACGGAAAGGACGTAGCATATTTGAAAGGGAAGACATCGGCAAGCAAA GCCAAAGATCACGTGCAGGACTCCTCTCTCGTAAAACTACCCGCGCAACT CTTAGAAATCCATCCAAACATCACAATGTGCTGTGATGTCTTCTACGTAC ACGGTTTGACTTTCTCCCTCTCGATATCGCGCAACATACGGTACATTTCA TGCCGGAAGCTGATCAACCGTACGGCCTCTGCTATCAAAGCATGCCTGGT CAAGGACTGCAAAATGTATAGCAACCGCGGATTCGTCCCAACCAACATCC ACGCCGACCTGGAGTACTCCCCCATCAAGGACGACTTTAAAGGCATCAAA TTCGACATCTGCTCGGCGGATGAGCATGTTGGGGAAGCGGAGCGAGCAGT CAGAACCATCAAAGACGGAGTACGCGCAACTATCCACGGATTACCGTACA AGAGGCTACCAAGAGAACTAATTCGCGGCATTGTAACCCTCTCCCAGAAG TCCGCCAACGTCTTCCCGCATCCAGACGGAATCAGCGACTCCATGTCGCC CGAAACAATCGCGACCGGACTCCCTAAGCCAAACTACCGAAAACTACGCA TCGATCTGGGGGCCTACGCCCAAGTCTACGACGGAACATCCAACGACACC AAATCCCGGACATTAGGAGCGATTGCGCTAAACCCGACGGACAGCATGAG CGGAGACTACGTATTCATGTCACTTACCACCGGAGAAACCATCACCAGAA CCTCATGGACGCCACTGCCAATTTCGGATCTTGTCATCACCCAAGTCAAA GCCATCGCAGAGAACAAAGGCATGCCCTTGGTTGGAGCCGGAACTCTCAT CACCGAGTACAACCCAGACGGAACTGGGGATGCATCGGACTATGACAAAG ACTACGCACTGCCAGACACTGCGGACCGCGCTTCCGACCATGAAATGACC ACAGACGCATACGCCACATCTGACGGNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACTAGTCGACAGAGGACTC GCCGAGTACGAGAACGGAGACGTCGACAGCGATGACAAAAATGATGACGA TGACGAAGAGGAGGAACCACCGAAGCGTCGAGCCGGATTACGACAAAAGA AAGAAAGAAAGTACAACTGGCGTTACGGCTTCCCACAGTTCGATTATTCA AGCATGCCAACTCCAAAACAACAGAAGAGCAAGCCGATCGACGTCCCGAA CACCGAGCAGGACCACATTCGCAAGGCCATCACGGGCCTCATGTTCACCC AAATGGAGCCCCCGACAGACAACGACATCGCCGAAGAGCTACGGATTGTC GAAGCAGGACTCGCCCGCCTCACCCTACGCGTTACGGAACTACGAGAACG AAGAGAAGGAAGGGAGCGACAGCAACGCGACCGCCCCAGGCAACTAGAAG TTGGCCAACGAGTGCTGATCGCGAGGACCAACGTATTCCTCCCCGCAAGA AGAGTAGAAGGAACAGTCGTCGGATTCACAGCACAACGAGTGAGAGTCAG CTACACTAACGCAGAAGGAGCCACTGTCATCGCCCTACGAGCAGCCCACA ACCTCACGCCCGTCCAGCCACGAAATGTCCGACCAGAACCCGCCAACAGC GGTGCCCAGCGCTAG back to top
|