Gvermi10560.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10560.t1
Unique NameGvermi10560.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:346761..347276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10560Gvermi10560Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 346761..347276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10560.t1.start1Gvermi10560.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 346761..346763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10560.t1.CDS1Gvermi10560.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 346761..347276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10560.t1.exon1Gvermi10560.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 346761..347276 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10560.t1.stop1Gvermi10560.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 347274..347276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10560.t1Gvermi10560.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 346761..347276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10560.t1 ID=Gvermi10560.t1|Name=Gvermi10560.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=172bp
MTSTTLANNDDIPTSIISMSPEQLACLPTFKIRYVGHDGGLSEDDTDDET
QCLAREAELRGCAYVVDPETGKPIWIKVECDDHGMPVESDLPVTTRQPIP
EPVVSYHLEDDMVCDGNSAPDAKCKMPNVKPNTKESVKRTKESVKRRNPR
YKHVMRCLRSSGRKLRSSCQV*
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spliced messenger RNA

>Gvermi10560.t1 ID=Gvermi10560.t1|Name=Gvermi10560.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=516bp|location=Sequence derived from alignment at ScGOVlb_16:346761..347276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCGACAACGCTTGCCAACAACGACGATATTCCAACCAGCATCAT
CAGCATGAGTCCAGAACAGCTAGCTTGCTTACCTACCTTCAAGATTCGAT
ATGTGGGTCACGATGGTGGTCTAAGTGAAGATGACACCGACGATGAGACC
CAATGCTTGGCCAGGGAAGCAGAGTTGCGAGGATGTGCCTACGTTGTTGA
TCCCGAGACTGGCAAGCCGATTTGGATCAAGGTGGAATGCGATGACCATG
GAATGCCCGTGGAAAGTGACTTGCCCGTCACAACTCGCCAACCGATACCA
GAGCCTGTAGTGTCGTATCATCTGGAGGATGATATGGTTTGTGATGGGAA
CTCAGCTCCGGATGCAAAGTGCAAGATGCCGAATGTAAAACCAAACACGA
AGGAAAGTGTTAAACGCACGAAGGAAAGTGTGAAACGCAGGAATCCCCGG
TACAAACATGTGATGCGCTGTCTCAGATCCTCTGGACGCAAGCTCAGATC
CTCATGTCAAGTGTGA
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protein sequence of Gvermi10560.t1

>Gvermi10560.t1 ID=Gvermi10560.t1|Name=Gvermi10560.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=172bp
MTSTTLANNDDIPTSIISMSPEQLACLPTFKIRYVGHDGGLSEDDTDDET
QCLAREAELRGCAYVVDPETGKPIWIKVECDDHGMPVESDLPVTTRQPIP
EPVVSYHLEDDMVCDGNSAPDAKCKMPNVKPNTKESVKRTKESVKRRNPR
YKHVMRCLRSSGRKLRSSCQV*
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mRNA from alignment at ScGOVlb_16:346761..347276+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10560.t1 ID=Gvermi10560.t1|Name=Gvermi10560.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=516bp|location=Sequence derived from alignment at ScGOVlb_16:346761..347276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCGACAACGCTTGCCAACAACGACGATATTCCAACCAGCATCAT
CAGCATGAGTCCAGAACAGCTAGCTTGCTTACCTACCTTCAAGATTCGAT
ATGTGGGTCACGATGGTGGTCTAAGTGAAGATGACACCGACGATGAGACC
CAATGCTTGGCCAGGGAAGCAGAGTTGCGAGGATGTGCCTACGTTGTTGA
TCCCGAGACTGGCAAGCCGATTTGGATCAAGGTGGAATGCGATGACCATG
GAATGCCCGTGGAAAGTGACTTGCCCGTCACAACTCGCCAACCGATACCA
GAGCCTGTAGTGTCGTATCATCTGGAGGATGATATGGTTTGTGATGGGAA
CTCAGCTCCGGATGCAAAGTGCAAGATGCCGAATGTAAAACCAAACACGA
AGGAAAGTGTTAAACGCACGAAGGAAAGTGTGAAACGCAGGAATCCCCGG
TACAAACATGTGATGCGCTGTCTCAGATCCTCTGGACGCAAGCTCAGATC
CTCATGTCAAGTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_16:346761..347276+

>Gvermi10560.t1 ID=Gvermi10560.t1|Name=Gvermi10560.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=516bp|location=Sequence derived from alignment at ScGOVlb_16:346761..347276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCGACAACGCTTGCCAACAACGACGATATTCCAACCAGCATCAT
CAGCATGAGTCCAGAACAGCTAGCTTGCTTACCTACCTTCAAGATTCGAT
ATGTGGGTCACGATGGTGGTCTAAGTGAAGATGACACCGACGATGAGACC
CAATGCTTGGCCAGGGAAGCAGAGTTGCGAGGATGTGCCTACGTTGTTGA
TCCCGAGACTGGCAAGCCGATTTGGATCAAGGTGGAATGCGATGACCATG
GAATGCCCGTGGAAAGTGACTTGCCCGTCACAACTCGCCAACCGATACCA
GAGCCTGTAGTGTCGTATCATCTGGAGGATGATATGGTTTGTGATGGGAA
CTCAGCTCCGGATGCAAAGTGCAAGATGCCGAATGTAAAACCAAACACGA
AGGAAAGTGTTAAACGCACGAAGGAAAGTGTGAAACGCAGGAATCCCCGG
TACAAACATGTGATGCGCTGTCTCAGATCCTCTGGACGCAAGCTCAGATC
CTCATGTCAAGTGTGA
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