Gvermi10553.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10553.t1
Unique NameGvermi10553.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:318868..323490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10553Gvermi10553Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 318868..323490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10553.t1Gvermi10553.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 318868..323490 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10553.t1.start1Gvermi10553.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 318868..318870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10553.t1.CDS1Gvermi10553.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 318868..319532 +
Gvermi10553.t1.CDS2Gvermi10553.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 323364..323490 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10553.t1.exon1Gvermi10553.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 318868..319532 +
Gvermi10553.t1.exon2Gvermi10553.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 323364..323490 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10553.t1.intron1Gvermi10553.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_16 319533..323363 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10553.t1.stop1Gvermi10553.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 323488..323490 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10553.t1 ID=Gvermi10553.t1|Name=Gvermi10553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=264bp
MKKNKSTNDYYYYLGSAKQASDYEITTEYIINTIKKTFEYGADIAHALKT
LEPLDLTLSKPTLKVSSKTDDAEKEAENRQFEIEFKTEFDEYNKRLRTYK
GNEIKSYALIYERCAKSMQNKIQARTDFESTIENNPIELLKAIKEHALNF
QEHRYEMSIILDSIRALIHTKQRDGESLADFTKRFKVARDIMESHIGGPI
SLIKSMKQMSDYDENDEAKVENYPDPRENTERERQVTTRDITRSRTHSYD
AWVGVEDQLSEVG*
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spliced messenger RNA

>Gvermi10553.t1 ID=Gvermi10553.t1|Name=Gvermi10553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=792bp|location=Sequence derived from alignment at ScGOVlb_16:318868..323490+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGAACAAGTCGACCAATGACTACTATTACTACCTGGGAAGTGC
GAAACAAGCAAGTGACTACGAGATCACAACGGAGTACATCATCAACACTA
TCAAGAAGACGTTTGAATACGGAGCCGATATCGCACACGCGTTGAAAACG
CTAGAGCCACTTGACCTCACATTATCGAAACCAACACTGAAAGTCAGCAG
TAAGACTGACGATGCTGAGAAAGAAGCAGAGAACAGGCAGTTTGAGATTG
AATTCAAGACAGAGTTTGACGAGTACAACAAACGACTCCGCACCTACAAA
GGCAACGAGATCAAAAGTTACGCATTGATCTATGAACGATGTGCAAAGTC
GATGCAGAACAAGATTCAAGCAAGAACTGACTTCGAGAGCACAATCGAAA
ACAATCCCATTGAGTTACTCAAAGCCATCAAGGAACACGCGTTGAACTTT
CAAGAACATCGATACGAAATGTCGATCATCTTGGACTCGATTCGAGCATT
GATTCATACAAAGCAGCGTGATGGAGAATCTTTGGCTGATTTCACCAAAC
GATTCAAAGTAGCAAGAGATATCATGGAATCTCATATTGGAGGACCCATT
TCCTTGATCAAATCGATGAAACAGATGAGTGACTACGACGAGAATGATGA
AGCAAAAGTCGAAAACTACCCCGACCCTAGAGAAAACACCGAACGCGAAC
GCCAAGTCACTACGCGGGATATCACGCGGTCTAGAACACATTCATACGAC
GCATGGGTAGGAGTGGAGGATCAACTCTCGGAAGTTGGTTAA
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protein sequence of Gvermi10553.t1

>Gvermi10553.t1 ID=Gvermi10553.t1|Name=Gvermi10553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=264bp
MKKNKSTNDYYYYLGSAKQASDYEITTEYIINTIKKTFEYGADIAHALKT
LEPLDLTLSKPTLKVSSKTDDAEKEAENRQFEIEFKTEFDEYNKRLRTYK
GNEIKSYALIYERCAKSMQNKIQARTDFESTIENNPIELLKAIKEHALNF
QEHRYEMSIILDSIRALIHTKQRDGESLADFTKRFKVARDIMESHIGGPI
SLIKSMKQMSDYDENDEAKVENYPDPRENTERERQVTTRDITRSRTHSYD
AWVGVEDQLSEVG*
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mRNA from alignment at ScGOVlb_16:318868..323490+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10553.t1 ID=Gvermi10553.t1|Name=Gvermi10553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4623bp|location=Sequence derived from alignment at ScGOVlb_16:318868..323490+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAAGAACAAGTCGACCAATGACTACTATTACTACCTGGGAAGTGC
GAAACAAGCAAGTGACTACGAGATCACAACGGAGTACATCATCAACACTA
TCAAGAAGACGTTTGAATACGGAGCCGATATCGCACACGCGTTGAAAACG
CTAGAGCCACTTGACCTCACATTATCGAAACCAACACTGAAAGTCAGCAG
TAAGACTGACGATGCTGAGAAAGAAGCAGAGAACAGGCAGTTTGAGATTG
AATTCAAGACAGAGTTTGACGAGTACAACAAACGACTCCGCACCTACAAA
GGCAACGAGATCAAAAGTTACGCATTGATCTATGAACGATGTGCAAAGTC
GATGCAGAACAAGATTCAAGCAAGAACTGACTTCGAGAGCACAATCGAAA
ACAATCCCATTGAGTTACTCAAAGCCATCAAGGAACACGCGTTGAACTTT
CAAGAACATCGATACGAAATGTCGATCATCTTGGACTCGATTCGAGCATT
GATTCATACAAAGCAGCGTGATGGAGAATCTTTGGCTGATTTCACCAAAC
GATTCAAAGTAGCAAGAGATATCATGGAATCTCATATTGGAGGACCCATT
TCCTTGATCAAATCGATGAAACAGATGAGTGACTACGACGAGAATGATGA
AGCAAAAGTCGAAAAGTGTTGTCAAACCGCGagcaacatgcttcttggtc
tgttgtatttggaaaattcggatcagaggaagtatggttcgattctcgag
ggattacgaactcaacaatcattgggtaacaaccaataccccaaaacaat
cacagaagccagtaatgtgttgagcaatcacagatttgatgaaagtttca
aagaacagaagcgcaaagacaaggataaaaagtcgaaagatgagacaaaa
gacaacaacgagaaaagtgacgaggttccatcactttcattcgcgcaact
ggaaggccgatgctattgctgcggaaaagcaggccacagatcacccgact
gtcgaacacgaaatcgtccaagagaagaatgggcaatcaacaagatgaag
cgcgaagaaaacaaccatgtgcaaacaacggaaagttcgacaaacgaaaa
caatacgacagttacacaaacaggatgggcaggtgcacacatcgattatc
agttctatcaatcggacgaactacgagaatggattctgttggacacagaa
tcgtcgacatctatcttttgcaacaagaagtatgtcacaaatatccgacc
agcaatcaacgaagtgttagaattgcagacgaatgctggtgttttgacgt
cgcgtcaaaagtgcactgtacctggttttggagatgcatggttcaatgag
aaagccgtaacgaatgtgctatgttacgcaaaagtcgccgacatgtacag
aatcttctacgacaatgagattgaagattcattcatcgtctatatgccaa
acggagagatcagatttgaaaggagcgaaagacgactatacttttggaaa
ccaacaatcaaaatgagcgacgagttaggatttttatcgacattgaaaga
gaacaaagagttctacacaccgcgacagtttgaaagagcaaagaaggcaa
gagacttctatcacgcaatgggcacgccatctatttcggatttgattgcg
atgattcgcatgaacttagtgaaaaacagtcctatcacagtggaagatgt
gaagttggcagagaagatttttggacccgatgtcagtacgatcaagggta
agacaacccgacgcaaacctttgccagttgtcgacaatgcgatcgacatt
ccccgcgaacttgtacaagcacaacgaaatgtgacaatcgcgatggatgg
tatttcagtcaattcactgaaatttctcaccacaatttctcgaaacttgt
actatcgaacggctcagtacatttctcgcccgacaatggacaactacgaa
gcagcaatctcttgtgtcgtcgcaacttacaacaaaggaggctttgatgt
acgccgcatacattgcgacaacgaatttcgaccgttaatggatcctctac
aggcaaagttacatattgacatgaactatgccaatgcccaggaacatgtc
cctgaagctgaacgcaacaaccgtgtcatcaaagaacgcgttcgagcgct
ctaccatcgcctaccatatgaccgattgacaagaactttggtcaagtata
tcgtcatggaagctacgaagaaactcaacttctatcctgcaaagcatggt
gtttcacaatattacagtccccgaatgattgttcatcaacagaacttgga
ctacgacaaacattgcaaactgagtgtgggtatgtacgtacaagcgcaca
acgaaccgacaatcaagaatacaaacgcgccgcgatcgttggactgctta
tatttgcgatacaacgacagtttacaaggtggtcatgaactgctacactt
gcaaacgaattctatcatcacgcgaagtcgagttacacaactaccaatca
cccccgccattattcaacaagtacatcgcattgctgagagtgagaatatg
ccgcctggtttgaagattcataacaggtatggagaattgctatacgacag
tgcttggcttgcaggagtggattatgatgaagatgaatttgaagatgaaa
cttacagccacaaggataagagcgaccacgacgacgatagcaccgacaat
gacgacgatgatgatctggacaatgatgagtacgatccgatcgatccaaa
tgaactagtcgaagatatcatacccgacaaggcgaacgaaaatggtaatc
acgatcaaaatgaggaccaacaaagcgtacacagcgaagaacaaaacgaa
aacaatccaaccacagccgatatcaacaacgatgaagaagaagaatcgca
gaacagtaatcaaagtgataatgataatgaagagtcagaagaagattcga
ccgaggaaacatcagttcagagcgaagaagaaaacgatgaagaccaaaat
gtgagcacagaaatccgtacgcgatcaggacgcacagtgaaaccgaagaa
actgatgaacctttaccaagaagacaacaaagatatgattgtcGAAGAGT
ATTCTACAGAAACCGCGAAAGTAATTGCTCGAGTGATGTGTCATTTTCAG
GACAAGTATGGTGGCACTACTGAACACCAATTTGCACAAACCTACAGTTT
GAATGCGGGCATCAAGAAATTTGGTAAAGAAGGCGAAGAAgctgcctaca
aagaaatgaaacaattacatgaccgcaatgtgtttgaaccgattcatttg
gatgaactatcgcgagaagaacgagaccgagcaatggaaagtttgatttt
tctcactgaaaagagagacggtaccaagaaggcacgtacatgcgccaatg
gaagtacacaacgcggatacatcgaccgcgacgaagctgctagtccgact
gcaagcacagatgcgatactattgacagcagtgattgatgcgaagcagaa
tcgagatgtgatgattgccgatgtaccaaatgcatttgtccaaacaggta
ttgacccaacgggaccacgagttatcatgaaaatcagaggagcacttgtc
gacatgctggtggacatggaccccgatcgatacagcaagtatgttattca
tcatggcaacagcaaagtattgtacatgcgaatgctgaaagcactttacg
ggatgatggtcgcatcattattgtactacaagaaatttgtgagcgacatc
aaaactatcggatttgaaattaacacatacgatccatgtgNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCAGACAA
TGACTGATCATGGTCGCAACACAGAGAAATGTAAACACAGCAGGAAGTGC
ATCACAACAAAAAGTTTGTGGGCACAAAGCCACGGAAGGGCGTATGAGCA
GGGCGGACCATACTCAGGACACAATGGAATAACAGTACACACGGCGAGTC
GTAGTATATTCAAGGGGAGTCAAACAACAACAGGTGCGCCTCACAAACAA
ACAAACACTGTTGTACGATACCGATAGTGCTGAGAGGAGTATCGAACCAA
AGGGAACTGATACAAACGGAATTGGAAGGTATGGAATCTTGTAGGTGTAA
ACCCACGAGAAGGACATCCCACCAAGCAAGAAAGGAACAACAGTAACTTG
CACCAAGATATTATCGAGGTATAGCAATACAACCACCCAGCGGCCGGCAG
TTAGGCGAGTGAAGTGGTTGTCTGTGTCCAATCCACAAGGAAGAAATGTA
CGACAATGACGGACATATCTCTAACAAAAAAGCGTTGGATCGGTACCATG
GTGGTAACGAATCCAACATGTCAGAGACAGTGAGGCGAGAGGCTCGGGCG
AGCTCCTAAGCCACAACAATCTGAAACACAGTTTGTGTGCACCGAGCTAC
CCCGACCCTAGAGAAAACACCGAACGCGAACGCCAAGTCACTACGCGGGA
TATCACGCGGTCTAGAACACATTCATACGACGCATGGGTAGGAGTGGAGG
ATCAACTCTCGGAAGTTGGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_16:318868..323490+

>Gvermi10553.t1 ID=Gvermi10553.t1|Name=Gvermi10553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=792bp|location=Sequence derived from alignment at ScGOVlb_16:318868..323490+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAAGAACAAGTCGACCAATGACTACTATTACTACCTGGGAAGTGC
GAAACAAGCAAGTGACTACGAGATCACAACGGAGTACATCATCAACACTA
TCAAGAAGACGTTTGAATACGGAGCCGATATCGCACACGCGTTGAAAACG
CTAGAGCCACTTGACCTCACATTATCGAAACCAACACTGAAAGTCAGCAG
TAAGACTGACGATGCTGAGAAAGAAGCAGAGAACAGGCAGTTTGAGATTG
AATTCAAGACAGAGTTTGACGAGTACAACAAACGACTCCGCACCTACAAA
GGCAACGAGATCAAAAGTTACGCATTGATCTATGAACGATGTGCAAAGTC
GATGCAGAACAAGATTCAAGCAAGAACTGACTTCGAGAGCACAATCGAAA
ACAATCCCATTGAGTTACTCAAAGCCATCAAGGAACACGCGTTGAACTTT
CAAGAACATCGATACGAAATGTCGATCATCTTGGACTCGATTCGAGCATT
GATTCATACAAAGCAGCGTGATGGAGAATCTTTGGCTGATTTCACCAAAC
GATTCAAAGTAGCAAGAGATATCATGGAATCTCATATTGGAGGACCCATT
TCCTTGATCAAATCGATGAAACAGATGAGTGACTACGACGAGAATGATGA
AGCAAAAGTCGAAAACTACCCCGACCCTAGAGAAAACACCGAACGCGAAC
GCCAAGTCACTACGCGGGATATCACGCGGTCTAGAACACATTCATACGAC
GCATGGGTAGGAGTGGAGGATCAACTCTCGGAAGTTGGTTAA
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