Gvermi10534.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10534.t1
Unique NameGvermi10534.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:226956..227381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10534Gvermi10534Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 226956..227381 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10534.t1.stop1Gvermi10534.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 226956..226958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10534.t1.CDS1Gvermi10534.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 226956..227381 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10534.t1.exon1Gvermi10534.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 226956..227381 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10534.t1.start1Gvermi10534.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 227379..227381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10534.t1Gvermi10534.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 226956..227381 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10534.t1 ID=Gvermi10534.t1|Name=Gvermi10534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=142bp
MPQVVTPPKPVDTPPSLLRMVKNLPLRPYARLQVLCRIFQLLDAFVEEIG
LPYNCFAPCFAAMERMIVLAEREAESEDSDDDEDSDDYYCEQGNSWFSRC
NRHEYHYYDRFGHIIGHAYAADEYGNRDYLTVRQFLLSYKL*
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spliced messenger RNA

>Gvermi10534.t1 ID=Gvermi10534.t1|Name=Gvermi10534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=426bp|location=Sequence derived from alignment at ScGOVlb_16:226956..227381- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAGGTTGTAACCCCACCAAAACCCGTGGATACTCCTCCATCTCT
TCTCAGGATGGTTAAGAATCTGCCACTCCGTCCCTATGCGAGACTTCAAG
TGCTCTGCCGTATTTTCCAGTTACTCGATGCCTTTGTGGAAGAGATAGGC
TTGCCGTACAATTGTTTTGCACCCTGCTTTGCTGCAATGGAACGGATGAT
TGTTCTGGCTGAAAGGGAGGCCGAAAGTGAGGATTCTGACGATGACGAAG
ACAGTGATGACTACTACTGCGAACAAGGCAACTCATGGTTCTCACGCTGC
AATCGCCACGAGTATCACTACTACGACAGATTTGGCCACATCATTGGTCA
TGCCTATGCAGCAGACGAGTATGGCAACAGGGATTACCTCACTGTACGTC
AATTTCTTTTGTCGTACAAGCTCTGA
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protein sequence of Gvermi10534.t1

>Gvermi10534.t1 ID=Gvermi10534.t1|Name=Gvermi10534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=142bp
MPQVVTPPKPVDTPPSLLRMVKNLPLRPYARLQVLCRIFQLLDAFVEEIG
LPYNCFAPCFAAMERMIVLAEREAESEDSDDDEDSDDYYCEQGNSWFSRC
NRHEYHYYDRFGHIIGHAYAADEYGNRDYLTVRQFLLSYKL*
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mRNA from alignment at ScGOVlb_16:226956..227381-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10534.t1 ID=Gvermi10534.t1|Name=Gvermi10534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=426bp|location=Sequence derived from alignment at ScGOVlb_16:226956..227381- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACAGGTTGTAACCCCACCAAAACCCGTGGATACTCCTCCATCTCT
TCTCAGGATGGTTAAGAATCTGCCACTCCGTCCCTATGCGAGACTTCAAG
TGCTCTGCCGTATTTTCCAGTTACTCGATGCCTTTGTGGAAGAGATAGGC
TTGCCGTACAATTGTTTTGCACCCTGCTTTGCTGCAATGGAACGGATGAT
TGTTCTGGCTGAAAGGGAGGCCGAAAGTGAGGATTCTGACGATGACGAAG
ACAGTGATGACTACTACTGCGAACAAGGCAACTCATGGTTCTCACGCTGC
AATCGCCACGAGTATCACTACTACGACAGATTTGGCCACATCATTGGTCA
TGCCTATGCAGCAGACGAGTATGGCAACAGGGATTACCTCACTGTACGTC
AATTTCTTTTGTCGTACAAGCTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_16:226956..227381-

>Gvermi10534.t1 ID=Gvermi10534.t1|Name=Gvermi10534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=426bp|location=Sequence derived from alignment at ScGOVlb_16:226956..227381- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACAGGTTGTAACCCCACCAAAACCCGTGGATACTCCTCCATCTCT
TCTCAGGATGGTTAAGAATCTGCCACTCCGTCCCTATGCGAGACTTCAAG
TGCTCTGCCGTATTTTCCAGTTACTCGATGCCTTTGTGGAAGAGATAGGC
TTGCCGTACAATTGTTTTGCACCCTGCTTTGCTGCAATGGAACGGATGAT
TGTTCTGGCTGAAAGGGAGGCCGAAAGTGAGGATTCTGACGATGACGAAG
ACAGTGATGACTACTACTGCGAACAAGGCAACTCATGGTTCTCACGCTGC
AATCGCCACGAGTATCACTACTACGACAGATTTGGCCACATCATTGGTCA
TGCCTATGCAGCAGACGAGTATGGCAACAGGGATTACCTCACTGTACGTC
AATTTCTTTTGTCGTACAAGCTCTGA
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