Gvermi10531.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10531.t1
Unique NameGvermi10531.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:217703..218431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10531Gvermi10531Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 217703..218431 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10531.t1.start1Gvermi10531.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 217703..217705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10531.t1.CDS1Gvermi10531.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 217703..218431 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10531.t1.exon1Gvermi10531.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 217703..218431 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10531.t1.stop1Gvermi10531.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 218429..218431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10531.t1Gvermi10531.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 217703..218431 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10531.t1 ID=Gvermi10531.t1|Name=Gvermi10531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=243bp
MVRNETPTDSSKSSSNQSTPEPQSSPDPSTSTPNPTSPWTRAIDLFGTMS
NQAGGTTYTVTAPTMGGVVKRSFDIAWTGGIPKADWSGLAKAATRPKTPL
CYRHEDPGKEAKVYARITTPPEGVPKIGRQTSAANILHIVTKSNKHAENT
GIDTIFCVRHPTIPDKMVSVITHYLSLTIEHVKSEIKRVETSWDTYDEDN
NAMAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKL*
back to top

spliced messenger RNA

>Gvermi10531.t1 ID=Gvermi10531.t1|Name=Gvermi10531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_16:217703..218431+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAGAAACGAAACCCCTACAGATTCAAGTAAATCTTCGAGCAATCA
AAGCACCCCAGAACCGCAGAGTTCACCAGATCCCAGTACTAGTACCCCGA
ATCCTACATCACCTTGGACAAGAGCCATTGATCTCTTTGGAACCATGAGT
AATCAAGCCGGAGGTACGACATACACAGTTACAGCCCCAACAATGGGAGG
AGTTGTCAAGCGTAGTTTCGACATCGCTTGGACTGGAGGCATCCCCAAGG
CCGATTGGTCTGGCCTCGCCAAGGCTGCAACTCGCCCCAAAACTCCACTT
TGTTACCGTCATGAAGACCCAGGCAAGGAAGCCAAGGTCTACGCCCGCAT
CACCACGCCTCCAGAGGGAGTTCCCAAGATCGGACGCCAAACATCAGCAG
CCAACATTCTCCACATTGTCACCAAGTCGAACAAGCACGCTGAAAACACT
GGAATCGACACCATCTTCTGTGTCCGTCATCCCACGATTCCTGACAAGAT
GGTCTCGGTCATCACTCATTATTTGAGCCTAACGATTGAGCATGTCAAGT
CGGAGATCAAGCGCGTGGAGACAAGCTGGGACACTTATGACGAAGACAAC
AATGCCATGGCTCAAGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAAATTGTGA
back to top

protein sequence of Gvermi10531.t1

>Gvermi10531.t1 ID=Gvermi10531.t1|Name=Gvermi10531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=243bp
MVRNETPTDSSKSSSNQSTPEPQSSPDPSTSTPNPTSPWTRAIDLFGTMS
NQAGGTTYTVTAPTMGGVVKRSFDIAWTGGIPKADWSGLAKAATRPKTPL
CYRHEDPGKEAKVYARITTPPEGVPKIGRQTSAANILHIVTKSNKHAENT
GIDTIFCVRHPTIPDKMVSVITHYLSLTIEHVKSEIKRVETSWDTYDEDN
NAMAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKL*
back to top

mRNA from alignment at ScGOVlb_16:217703..218431+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10531.t1 ID=Gvermi10531.t1|Name=Gvermi10531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_16:217703..218431+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGAGAAACGAAACCCCTACAGATTCAAGTAAATCTTCGAGCAATCA
AAGCACCCCAGAACCGCAGAGTTCACCAGATCCCAGTACTAGTACCCCGA
ATCCTACATCACCTTGGACAAGAGCCATTGATCTCTTTGGAACCATGAGT
AATCAAGCCGGAGGTACGACATACACAGTTACAGCCCCAACAATGGGAGG
AGTTGTCAAGCGTAGTTTCGACATCGCTTGGACTGGAGGCATCCCCAAGG
CCGATTGGTCTGGCCTCGCCAAGGCTGCAACTCGCCCCAAAACTCCACTT
TGTTACCGTCATGAAGACCCAGGCAAGGAAGCCAAGGTCTACGCCCGCAT
CACCACGCCTCCAGAGGGAGTTCCCAAGATCGGACGCCAAACATCAGCAG
CCAACATTCTCCACATTGTCACCAAGTCGAACAAGCACGCTGAAAACACT
GGAATCGACACCATCTTCTGTGTCCGTCATCCCACGATTCCTGACAAGAT
GGTCTCGGTCATCACTCATTATTTGAGCCTAACGATTGAGCATGTCAAGT
CGGAGATCAAGCGCGTGGAGACAAGCTGGGACACTTATGACGAAGACAAC
AATGCCATGGCTCAAGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAAATTGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_16:217703..218431+

>Gvermi10531.t1 ID=Gvermi10531.t1|Name=Gvermi10531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=729bp|location=Sequence derived from alignment at ScGOVlb_16:217703..218431+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGAGAAACGAAACCCCTACAGATTCAAGTAAATCTTCGAGCAATCA
AAGCACCCCAGAACCGCAGAGTTCACCAGATCCCAGTACTAGTACCCCGA
ATCCTACATCACCTTGGACAAGAGCCATTGATCTCTTTGGAACCATGAGT
AATCAAGCCGGAGGTACGACATACACAGTTACAGCCCCAACAATGGGAGG
AGTTGTCAAGCGTAGTTTCGACATCGCTTGGACTGGAGGCATCCCCAAGG
CCGATTGGTCTGGCCTCGCCAAGGCTGCAACTCGCCCCAAAACTCCACTT
TGTTACCGTCATGAAGACCCAGGCAAGGAAGCCAAGGTCTACGCCCGCAT
CACCACGCCTCCAGAGGGAGTTCCCAAGATCGGACGCCAAACATCAGCAG
CCAACATTCTCCACATTGTCACCAAGTCGAACAAGCACGCTGAAAACACT
GGAATCGACACCATCTTCTGTGTCCGTCATCCCACGATTCCTGACAAGAT
GGTCTCGGTCATCACTCATTATTTGAGCCTAACGATTGAGCATGTCAAGT
CGGAGATCAAGCGCGTGGAGACAAGCTGGGACACTTATGACGAAGACAAC
AATGCCATGGCTCAAGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAAATTGTGA
back to top