Gvermi10517.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10517.t1
Unique NameGvermi10517.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:148081..149070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWC5
PFAMsMg_chelatase
Max annot lvl2836|Bacillariophyta
Evalue8.64e-213
EggNOG OGsCOG1239@1|root,2QRUY@2759|Eukaryota,2XEQ7@2836|Bacillariophyta
DescriptionInvolved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10517Gvermi10517Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 148081..149070 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10517.t1.stop1Gvermi10517.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 148081..148083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10517.t1.CDS1Gvermi10517.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 148081..149070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10517.t1.exon1Gvermi10517.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 148081..149070 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10517.t1.start1Gvermi10517.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 149068..149070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10517.t1Gvermi10517.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 148081..149070 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10517.t1 ID=Gvermi10517.t1|Name=Gvermi10517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp
MKLALQLNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPEIEVVKNDPFN
SHKSNLDLMGNEVKLAIQNNESLETEFIKIPMIDLPLGATEDRVCGTIDI
EKALTEGIKAFEPGLLAKANRGLLYVDEVNLLDDHLVDILLDSAASGWNT
VEREGISIRHPARFVLIGSGNPEEGELRPQLLDRFGMHAEIRTVKDPILR
VQVVEERTAFDQNPKAWLENYEAQQQELRDQIIAAQKLLSTVEIDYNLRV
KISEVCSQLDVDGLRGDIVTNRAAKAHAAYSGKEKVTIDDISKIITLCLR
HRLRKDPLEAIDSGDKVNKVFKEVFEIDD*
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spliced messenger RNA

>Gvermi10517.t1 ID=Gvermi10517.t1|Name=Gvermi10517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_16:148081..149070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTAGCTTTACAATTAAATGTAATTGACCCTAAAATTGGAGGAGT
TATGATTATGGGAGATCGAGGAACGGGAAAATCAACCACAATTCGAGCAA
TTGCAGATTTACTACCAGAAATTGAAGTAGTAAAAAATGATCCATTTAAT
TCTCATAAATCGAATTTAGATTTAATGGGAAATGAAGTAAAATTAGCTAT
TCAAAACAATGAAAGTTTAGAAACTGAATTTATTAAAATACCAATGATCG
ATCTACCTCTTGGTGCAACGGAAGATCGTGTGTGTGGAACAATTGATATA
GAAAAAGCTTTAACAGAAGGAATCAAAGCTTTTGAACCTGGATTATTAGC
AAAAGCAAACCGAGGGCTTCTATATGTAGATGAAGTTAATTTATTGGATG
ATCATCTAGTAGATATTTTACTAGATTCTGCTGCCTCAGGTTGGAATACA
GTTGAACGTGAAGGAATTTCTATACGTCATCCAGCTAGATTTGTATTAAT
TGGATCAGGGAATCCTGAGGAAGGTGAATTACGACCACAATTATTAGATC
GGTTTGGTATGCACGCTGAAATTCGAACAGTAAAAGACCCAATTCTACGC
GTACAAGTAGTAGAAGAAAGAACAGCATTTGATCAAAATCCAAAAGCTTG
GCTTGAAAATTATGAAGCCCAGCAGCAAGAACTGCGTGACCAAATTATTG
CTGCTCAAAAGTTGTTATCCACAGTTGAAATTGATTACAATTTAAGAGTA
AAAATTTCTGAGGTATGCAGTCAGTTAGATGTAGATGGTTTAAGAGGGGA
TATCGTTACTAATCGTGCTGCAAAAGCACACGCAGCCTATAGTGGGAAAG
AGAAAGTGACAATCGATGATATATCAAAAATTATAACCTTATGTTTGCGC
CATCGATTACGAAAAGATCCTTTAGAAGCGATTGATTCTGGTGACAAAGT
AAATAAAGTTTTTAAAGAAGTTTTCGAAATAGACGATTAA
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protein sequence of Gvermi10517.t1

>Gvermi10517.t1 ID=Gvermi10517.t1|Name=Gvermi10517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MKLALQLNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPEIEVVKNDPFN
SHKSNLDLMGNEVKLAIQNNESLETEFIKIPMIDLPLGATEDRVCGTIDI
EKALTEGIKAFEPGLLAKANRGLLYVDEVNLLDDHLVDILLDSAASGWNT
VEREGISIRHPARFVLIGSGNPEEGELRPQLLDRFGMHAEIRTVKDPILR
VQVVEERTAFDQNPKAWLENYEAQQQELRDQIIAAQKLLSTVEIDYNLRV
KISEVCSQLDVDGLRGDIVTNRAAKAHAAYSGKEKVTIDDISKIITLCLR
HRLRKDPLEAIDSGDKVNKVFKEVFEIDD*
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mRNA from alignment at ScGOVlb_16:148081..149070-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10517.t1 ID=Gvermi10517.t1|Name=Gvermi10517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_16:148081..149070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATTAGCTTTACAATTAAATGTAATTGACCCTAAAATTGGAGGAGT
TATGATTATGGGAGATCGAGGAACGGGAAAATCAACCACAATTCGAGCAA
TTGCAGATTTACTACCAGAAATTGAAGTAGTAAAAAATGATCCATTTAAT
TCTCATAAATCGAATTTAGATTTAATGGGAAATGAAGTAAAATTAGCTAT
TCAAAACAATGAAAGTTTAGAAACTGAATTTATTAAAATACCAATGATCG
ATCTACCTCTTGGTGCAACGGAAGATCGTGTGTGTGGAACAATTGATATA
GAAAAAGCTTTAACAGAAGGAATCAAAGCTTTTGAACCTGGATTATTAGC
AAAAGCAAACCGAGGGCTTCTATATGTAGATGAAGTTAATTTATTGGATG
ATCATCTAGTAGATATTTTACTAGATTCTGCTGCCTCAGGTTGGAATACA
GTTGAACGTGAAGGAATTTCTATACGTCATCCAGCTAGATTTGTATTAAT
TGGATCAGGGAATCCTGAGGAAGGTGAATTACGACCACAATTATTAGATC
GGTTTGGTATGCACGCTGAAATTCGAACAGTAAAAGACCCAATTCTACGC
GTACAAGTAGTAGAAGAAAGAACAGCATTTGATCAAAATCCAAAAGCTTG
GCTTGAAAATTATGAAGCCCAGCAGCAAGAACTGCGTGACCAAATTATTG
CTGCTCAAAAGTTGTTATCCACAGTTGAAATTGATTACAATTTAAGAGTA
AAAATTTCTGAGGTATGCAGTCAGTTAGATGTAGATGGTTTAAGAGGGGA
TATCGTTACTAATCGTGCTGCAAAAGCACACGCAGCCTATAGTGGGAAAG
AGAAAGTGACAATCGATGATATATCAAAAATTATAACCTTATGTTTGCGC
CATCGATTACGAAAAGATCCTTTAGAAGCGATTGATTCTGGTGACAAAGT
AAATAAAGTTTTTAAAGAAGTTTTCGAAATAGACGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_16:148081..149070-

>Gvermi10517.t1 ID=Gvermi10517.t1|Name=Gvermi10517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=990bp|location=Sequence derived from alignment at ScGOVlb_16:148081..149070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATTAGCTTTACAATTAAATGTAATTGACCCTAAAATTGGAGGAGT
TATGATTATGGGAGATCGAGGAACGGGAAAATCAACCACAATTCGAGCAA
TTGCAGATTTACTACCAGAAATTGAAGTAGTAAAAAATGATCCATTTAAT
TCTCATAAATCGAATTTAGATTTAATGGGAAATGAAGTAAAATTAGCTAT
TCAAAACAATGAAAGTTTAGAAACTGAATTTATTAAAATACCAATGATCG
ATCTACCTCTTGGTGCAACGGAAGATCGTGTGTGTGGAACAATTGATATA
GAAAAAGCTTTAACAGAAGGAATCAAAGCTTTTGAACCTGGATTATTAGC
AAAAGCAAACCGAGGGCTTCTATATGTAGATGAAGTTAATTTATTGGATG
ATCATCTAGTAGATATTTTACTAGATTCTGCTGCCTCAGGTTGGAATACA
GTTGAACGTGAAGGAATTTCTATACGTCATCCAGCTAGATTTGTATTAAT
TGGATCAGGGAATCCTGAGGAAGGTGAATTACGACCACAATTATTAGATC
GGTTTGGTATGCACGCTGAAATTCGAACAGTAAAAGACCCAATTCTACGC
GTACAAGTAGTAGAAGAAAGAACAGCATTTGATCAAAATCCAAAAGCTTG
GCTTGAAAATTATGAAGCCCAGCAGCAAGAACTGCGTGACCAAATTATTG
CTGCTCAAAAGTTGTTATCCACAGTTGAAATTGATTACAATTTAAGAGTA
AAAATTTCTGAGGTATGCAGTCAGTTAGATGTAGATGGTTTAAGAGGGGA
TATCGTTACTAATCGTGCTGCAAAAGCACACGCAGCCTATAGTGGGAAAG
AGAAAGTGACAATCGATGATATATCAAAAATTATAACCTTATGTTTGCGC
CATCGATTACGAAAAGATCCTTTAGAAGCGATTGATTCTGGTGACAAAGT
AAATAAAGTTTTTAAAGAAGTTTTCGAAATAGACGATTAA
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