Gvermi10516.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10516.t1
Unique NameGvermi10516.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:139506..139889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWC9
Preferred namerpl12
PFAMsRibosomal_L12,Ribosomal_L12_N
Max annot lvl2759|Eukaryota
KEGG koko:K02863,ko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000311,GO:0000313,GO:0000315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009547,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0030054,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0034641,GO:0034645,GO:0042221,GO:0042651,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055044,GO:0071704,GO:0098542,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue9.27e-53
EggNOG OGsCOG0222@1|root,KOG1715@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10516Gvermi10516Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 139506..139889 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10516.t1.start1Gvermi10516.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 139506..139508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10516.t1.CDS1Gvermi10516.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 139506..139889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10516.t1.exon1Gvermi10516.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 139506..139889 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10516.t1.stop1Gvermi10516.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 139887..139889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10516.t1Gvermi10516.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 139506..139889 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10516.t1 ID=Gvermi10516.t1|Name=Gvermi10516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=128bp
MSEKIDQIIEELKTLTLLEASELVTKIEDTFGVDASVASGGGLMAVTPTA
EEQVEEKTEFTVMLEEVPSDKKIPILKVVRGLTGLGLKEAKELVESAPKQ
VAADLSKDAAENAKKQIEAAGGKVSLV*
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spliced messenger RNA

>Gvermi10516.t1 ID=Gvermi10516.t1|Name=Gvermi10516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp|location=Sequence derived from alignment at ScGOVlb_16:139506..139889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAAAAAATTGATCAAATTATCGAAGAGTTAAAAACATTAACATT
ATTAGAAGCTTCAGAATTAGTAACAAAGATTGAAGATACATTTGGTGTCG
ATGCTTCAGTGGCTAGTGGTGGTGGATTAATGGCAGTAACTCCGACAGCA
GAAGAGCAAGTGGAAGAAAAAACAGAGTTTACTGTTATGTTAGAAGAAGT
TCCTTCTGACAAAAAAATTCCTATCTTAAAAGTTGTTCGAGGATTAACTG
GCTTAGGGCTAAAAGAAGCAAAAGAACTAGTAGAATCAGCTCCTAAACAA
GTTGCAGCAGATTTATCGAAAGATGCTGCAGAAAATGCTAAAAAACAAAT
TGAAGCAGCTGGTGGTAAAGTTTCATTAGTTTAG
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protein sequence of Gvermi10516.t1

>Gvermi10516.t1 ID=Gvermi10516.t1|Name=Gvermi10516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=128bp
MSEKIDQIIEELKTLTLLEASELVTKIEDTFGVDASVASGGGLMAVTPTA
EEQVEEKTEFTVMLEEVPSDKKIPILKVVRGLTGLGLKEAKELVESAPKQ
VAADLSKDAAENAKKQIEAAGGKVSLV*
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mRNA from alignment at ScGOVlb_16:139506..139889+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10516.t1 ID=Gvermi10516.t1|Name=Gvermi10516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp|location=Sequence derived from alignment at ScGOVlb_16:139506..139889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGAAAAAATTGATCAAATTATCGAAGAGTTAAAAACATTAACATT
ATTAGAAGCTTCAGAATTAGTAACAAAGATTGAAGATACATTTGGTGTCG
ATGCTTCAGTGGCTAGTGGTGGTGGATTAATGGCAGTAACTCCGACAGCA
GAAGAGCAAGTGGAAGAAAAAACAGAGTTTACTGTTATGTTAGAAGAAGT
TCCTTCTGACAAAAAAATTCCTATCTTAAAAGTTGTTCGAGGATTAACTG
GCTTAGGGCTAAAAGAAGCAAAAGAACTAGTAGAATCAGCTCCTAAACAA
GTTGCAGCAGATTTATCGAAAGATGCTGCAGAAAATGCTAAAAAACAAAT
TGAAGCAGCTGGTGGTAAAGTTTCATTAGTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_16:139506..139889+

>Gvermi10516.t1 ID=Gvermi10516.t1|Name=Gvermi10516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=384bp|location=Sequence derived from alignment at ScGOVlb_16:139506..139889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGAAAAAATTGATCAAATTATCGAAGAGTTAAAAACATTAACATT
ATTAGAAGCTTCAGAATTAGTAACAAAGATTGAAGATACATTTGGTGTCG
ATGCTTCAGTGGCTAGTGGTGGTGGATTAATGGCAGTAACTCCGACAGCA
GAAGAGCAAGTGGAAGAAAAAACAGAGTTTACTGTTATGTTAGAAGAAGT
TCCTTCTGACAAAAAAATTCCTATCTTAAAAGTTGTTCGAGGATTAACTG
GCTTAGGGCTAAAAGAAGCAAAAGAACTAGTAGAATCAGCTCCTAAACAA
GTTGCAGCAGATTTATCGAAAGATGCTGCAGAAAATGCTAAAAAACAAAT
TGAAGCAGCTGGTGGTAAAGTTTCATTAGTTTAG
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