Gvermi10504.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10504.t1
Unique NameGvermi10504.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:54227..54907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10504Gvermi10504Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 54227..54907 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10504.t1.stop1Gvermi10504.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 54227..54229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10504.t1.CDS1Gvermi10504.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 54227..54907 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10504.t1.exon1Gvermi10504.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 54227..54907 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10504.t1.start1Gvermi10504.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 54905..54907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10504.t1Gvermi10504.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 54227..54907 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10504.t1 ID=Gvermi10504.t1|Name=Gvermi10504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=227bp
MDFETAFAIALTAAIAYMLYVNGVESFQPVHRYPPRIGEWENVNNGGPPH
VGGYGKGTGPRSITVTGATNSGYERNLIQNAYSQIPSISVEGTDWEITPW
SVAKHAHHGPDFGLDPTKYGMTQSDLDSIALNGLINHINQGGTAPNANYV
KELQKRWKAFAEHKNVQDCGIQPVMGRDWHVRKHQPTRIFISFDSETGES
FTGYQLTKRQSQNHNEIGIIGKNYKN*
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spliced messenger RNA

>Gvermi10504.t1 ID=Gvermi10504.t1|Name=Gvermi10504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=681bp|location=Sequence derived from alignment at ScGOVlb_16:54227..54907- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTTGAAACAGCCTTTGCGATCGCATTAACCGCAGCAATCGCGTA
TATGCTGTATGTCAATGGGGTAGAAAGTTTTCAGCCAGTCCACCGTTATC
CACCTCGTATTGGTGAATGGGAGAATGTGAACAATGGCGGTCCTCCACAT
GTTGGAGGTTATGGGAAAGGAACTGGTCCAAGAAGCATAACGGTAACAGG
TGCGACCAATTCAGGATATGAAAGAAATCTAATTCAAAATGCTTATAGTC
AGATTCCTAGTATTTCGGTGGAAGGAACAGATTGGGAAATTACACCTTGG
TCGGTTGCTAAACACGCGCATCATGGTCCAGATTTTGGACTCGATCCAAC
TAAGTACGGAATGACGCAATCAGATTTAGATAGTATTGCTCTAAATGGTC
TTATAAATCATATCAACCAAGGCGGAACGGCACCAAATGCCAACTATGTC
AAGGAATTACAAAAGCGTTGGAAAGCTTTTGCAGAACATAAAAATGTTCA
GGACTGTGGAATTCAACCTGTTATGGGGAGAGATTGGCACGTTCGTAAGC
ATCAACCCACAAGAATTTTTATTTCATTTGACTCGGAGACTGGAGAAAGT
TTCACTGGTTATCAGTTAACGAAACGTCAATCTCAAAATCATAATGAAAT
TGGTATCATTGGAAAAAATTATAAAAATTAA
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protein sequence of Gvermi10504.t1

>Gvermi10504.t1 ID=Gvermi10504.t1|Name=Gvermi10504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=227bp
MDFETAFAIALTAAIAYMLYVNGVESFQPVHRYPPRIGEWENVNNGGPPH
VGGYGKGTGPRSITVTGATNSGYERNLIQNAYSQIPSISVEGTDWEITPW
SVAKHAHHGPDFGLDPTKYGMTQSDLDSIALNGLINHINQGGTAPNANYV
KELQKRWKAFAEHKNVQDCGIQPVMGRDWHVRKHQPTRIFISFDSETGES
FTGYQLTKRQSQNHNEIGIIGKNYKN*
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mRNA from alignment at ScGOVlb_16:54227..54907-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10504.t1 ID=Gvermi10504.t1|Name=Gvermi10504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=681bp|location=Sequence derived from alignment at ScGOVlb_16:54227..54907- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTTGAAACAGCCTTTGCGATCGCATTAACCGCAGCAATCGCGTA
TATGCTGTATGTCAATGGGGTAGAAAGTTTTCAGCCAGTCCACCGTTATC
CACCTCGTATTGGTGAATGGGAGAATGTGAACAATGGCGGTCCTCCACAT
GTTGGAGGTTATGGGAAAGGAACTGGTCCAAGAAGCATAACGGTAACAGG
TGCGACCAATTCAGGATATGAAAGAAATCTAATTCAAAATGCTTATAGTC
AGATTCCTAGTATTTCGGTGGAAGGAACAGATTGGGAAATTACACCTTGG
TCGGTTGCTAAACACGCGCATCATGGTCCAGATTTTGGACTCGATCCAAC
TAAGTACGGAATGACGCAATCAGATTTAGATAGTATTGCTCTAAATGGTC
TTATAAATCATATCAACCAAGGCGGAACGGCACCAAATGCCAACTATGTC
AAGGAATTACAAAAGCGTTGGAAAGCTTTTGCAGAACATAAAAATGTTCA
GGACTGTGGAATTCAACCTGTTATGGGGAGAGATTGGCACGTTCGTAAGC
ATCAACCCACAAGAATTTTTATTTCATTTGACTCGGAGACTGGAGAAAGT
TTCACTGGTTATCAGTTAACGAAACGTCAATCTCAAAATCATAATGAAAT
TGGTATCATTGGAAAAAATTATAAAAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_16:54227..54907-

>Gvermi10504.t1 ID=Gvermi10504.t1|Name=Gvermi10504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=681bp|location=Sequence derived from alignment at ScGOVlb_16:54227..54907- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTTGAAACAGCCTTTGCGATCGCATTAACCGCAGCAATCGCGTA
TATGCTGTATGTCAATGGGGTAGAAAGTTTTCAGCCAGTCCACCGTTATC
CACCTCGTATTGGTGAATGGGAGAATGTGAACAATGGCGGTCCTCCACAT
GTTGGAGGTTATGGGAAAGGAACTGGTCCAAGAAGCATAACGGTAACAGG
TGCGACCAATTCAGGATATGAAAGAAATCTAATTCAAAATGCTTATAGTC
AGATTCCTAGTATTTCGGTGGAAGGAACAGATTGGGAAATTACACCTTGG
TCGGTTGCTAAACACGCGCATCATGGTCCAGATTTTGGACTCGATCCAAC
TAAGTACGGAATGACGCAATCAGATTTAGATAGTATTGCTCTAAATGGTC
TTATAAATCATATCAACCAAGGCGGAACGGCACCAAATGCCAACTATGTC
AAGGAATTACAAAAGCGTTGGAAAGCTTTTGCAGAACATAAAAATGTTCA
GGACTGTGGAATTCAACCTGTTATGGGGAGAGATTGGCACGTTCGTAAGC
ATCAACCCACAAGAATTTTTATTTCATTTGACTCGGAGACTGGAGAAAGT
TTCACTGGTTATCAGTTAACGAAACGTCAATCTCAAAATCATAATGAAAT
TGGTATCATTGGAAAAAATTATAAAAATTAA
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