Ggra3360.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3360.t1
Unique NameGgra3360.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:103242..104354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue4.26e-68
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3360Ggra3360Gracilaria gracilis GNS1m malegenetig00000189_pilon 103242..104354 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3360.t1.stop1Ggra3360.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 103242..103244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3360.t1.CDS1Ggra3360.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 103242..104354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3360.t1.exon1Ggra3360.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 103242..104354 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3360.t1.start1Ggra3360.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 104352..104354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3360.t1Ggra3360.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 103242..104354 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3360.t1 ID=Ggra3360.t1|Name=Ggra3360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=371bp
MVQLRYAADSKESDWLVRTCVQKQHIFSKPDTKERRLFFKLRGSTLTAHP
EPSYPELWRSPVKELRCAEPQSQTFVLRLEKVVITLRAESPDAFGRWVDA
LNRSAGTSFERFYRRERCIGRGHFSQVYQASDRSTGDKFAVKVINKDKND
MEKSKKFIRREVKVLSVTDHPNLVRAVDFFSHRGKPHIVLEYVEGGSLRE
LIRKKKRLSESEARPVLRGILSAVTYLHSVNIVHRDIKPENVLMERQDLP
KLTDFGLATFVNEDKHIHSVVGTPSYVAPEVIRNVPYGPPADVWSCGVLL
YFMLAGERPFTGDTREDIKRAVLAGDLKFPSQLFGDCSPEIKHLINLMLN
FEQRLRISAENALQHPWLSR*
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spliced messenger RNA

>Ggra3360.t1 ID=Ggra3360.t1|Name=Ggra3360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000189_pilon:103242..104354- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCAGCTGCGCTACGCCGCCGACTCCAAGGAGTCGGACTGGCTTGT
ACGAACGTGCGTACAAAAGCAACACATTTTCTCCAAGCCCGATACCAAGG
AGCGACGTCTGTTCTTCAAGTTGCGCGGCTCAACTCTCACAGCGCACCCA
GAGCCGTCGTATCCGGAGCTTTGGCGTTCTCCTGTCAAGGAGCTTCGCTG
CGCCGAACCACAATCGCAAACATTCGTTCTCCGCCTAGAGAAGGTTGTTA
TTACCCTGCGCGCCGAGTCACCCGATGCATTTGGGCGATGGGTGGATGCC
CTGAATCGTTCGGCGGGTACTTCGTTTGAGAGATTTTACCGACGGGAGCG
TTGCATCGGACGCGGCCATTTCTCGCAGGTGTATCAAGCTAGCGATCGTT
CTACCGGTGATAAGTTTGCCGTCAAGGTGATTAACAAGGACAAGAATGAC
ATGGAGAAGAGCAAGAAATTTATCAGACGTGAAGTCAAAGTGCTCTCCGT
CACTGACCATCCCAACCTTGTACGCGCCGTCGACTTTTTCTCACATCGAG
GCAAGCCACACATTGTGCTCGAGTACGTTGAGGGAGGCTCTCTAAGAGAG
TTGATTCGGAAGAAGAAGCGGTTGAGCGAGTCGGAGGCACGGCCCGTTCT
TCGCGGAATACTTAGCGCGGTAACGTACCTACATTCCGTTAACATTGTGC
ACCGCGATATCAAGCCAGAAAACGTACTAATGGAACGACAAGACCTACCC
AAATTAACTGACTTTGGCTTGGCAACTTTTGTGAACGAGGACAAACATAT
TCACTCCGTGGTGGGCACACCGAGTTACGTGGCGCCGGAGGTGATTCGTA
ACGTGCCATACGGACCGCCTGCGGACGTGTGGTCTTGTGGAGTATTGCTT
TACTTCATGCTCGCGGGAGAACGGCCGTTCACTGGCGATACCAGGGAGGA
CATCAAGCGTGCAGTACTGGCCGGAGACCTCAAGTTTCCCAGCCAGCTAT
TTGGGGACTGTTCTCCTGAGATCAAGCATCTTATCAACCTGATGCTGAAC
TTTGAGCAGCGACTTCGAATCAGCGCGGAGAATGCGCTGCAACACCCTTG
GCTGTCTCGCTGA
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protein sequence of Ggra3360.t1

>Ggra3360.t1 ID=Ggra3360.t1|Name=Ggra3360.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MVQLRYAADSKESDWLVRTCVQKQHIFSKPDTKERRLFFKLRGSTLTAHP
EPSYPELWRSPVKELRCAEPQSQTFVLRLEKVVITLRAESPDAFGRWVDA
LNRSAGTSFERFYRRERCIGRGHFSQVYQASDRSTGDKFAVKVINKDKND
MEKSKKFIRREVKVLSVTDHPNLVRAVDFFSHRGKPHIVLEYVEGGSLRE
LIRKKKRLSESEARPVLRGILSAVTYLHSVNIVHRDIKPENVLMERQDLP
KLTDFGLATFVNEDKHIHSVVGTPSYVAPEVIRNVPYGPPADVWSCGVLL
YFMLAGERPFTGDTREDIKRAVLAGDLKFPSQLFGDCSPEIKHLINLMLN
FEQRLRISAENALQHPWLSR*
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mRNA from alignment at tig00000189_pilon:103242..104354-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3360.t1 ID=Ggra3360.t1|Name=Ggra3360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000189_pilon:103242..104354- (Gracilaria gracilis GNS1m male)
ATGGTTCAGCTGCGCTACGCCGCCGACTCCAAGGAGTCGGACTGGCTTGT
ACGAACGTGCGTACAAAAGCAACACATTTTCTCCAAGCCCGATACCAAGG
AGCGACGTCTGTTCTTCAAGTTGCGCGGCTCAACTCTCACAGCGCACCCA
GAGCCGTCGTATCCGGAGCTTTGGCGTTCTCCTGTCAAGGAGCTTCGCTG
CGCCGAACCACAATCGCAAACATTCGTTCTCCGCCTAGAGAAGGTTGTTA
TTACCCTGCGCGCCGAGTCACCCGATGCATTTGGGCGATGGGTGGATGCC
CTGAATCGTTCGGCGGGTACTTCGTTTGAGAGATTTTACCGACGGGAGCG
TTGCATCGGACGCGGCCATTTCTCGCAGGTGTATCAAGCTAGCGATCGTT
CTACCGGTGATAAGTTTGCCGTCAAGGTGATTAACAAGGACAAGAATGAC
ATGGAGAAGAGCAAGAAATTTATCAGACGTGAAGTCAAAGTGCTCTCCGT
CACTGACCATCCCAACCTTGTACGCGCCGTCGACTTTTTCTCACATCGAG
GCAAGCCACACATTGTGCTCGAGTACGTTGAGGGAGGCTCTCTAAGAGAG
TTGATTCGGAAGAAGAAGCGGTTGAGCGAGTCGGAGGCACGGCCCGTTCT
TCGCGGAATACTTAGCGCGGTAACGTACCTACATTCCGTTAACATTGTGC
ACCGCGATATCAAGCCAGAAAACGTACTAATGGAACGACAAGACCTACCC
AAATTAACTGACTTTGGCTTGGCAACTTTTGTGAACGAGGACAAACATAT
TCACTCCGTGGTGGGCACACCGAGTTACGTGGCGCCGGAGGTGATTCGTA
ACGTGCCATACGGACCGCCTGCGGACGTGTGGTCTTGTGGAGTATTGCTT
TACTTCATGCTCGCGGGAGAACGGCCGTTCACTGGCGATACCAGGGAGGA
CATCAAGCGTGCAGTACTGGCCGGAGACCTCAAGTTTCCCAGCCAGCTAT
TTGGGGACTGTTCTCCTGAGATCAAGCATCTTATCAACCTGATGCTGAAC
TTTGAGCAGCGACTTCGAATCAGCGCGGAGAATGCGCTGCAACACCCTTG
GCTGTCTCGCTGA
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Coding sequence (CDS) from alignment at tig00000189_pilon:103242..104354-

>Ggra3360.t1 ID=Ggra3360.t1|Name=Ggra3360.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000189_pilon:103242..104354- (Gracilaria gracilis GNS1m male)
ATGGTTCAGCTGCGCTACGCCGCCGACTCCAAGGAGTCGGACTGGCTTGT
ACGAACGTGCGTACAAAAGCAACACATTTTCTCCAAGCCCGATACCAAGG
AGCGACGTCTGTTCTTCAAGTTGCGCGGCTCAACTCTCACAGCGCACCCA
GAGCCGTCGTATCCGGAGCTTTGGCGTTCTCCTGTCAAGGAGCTTCGCTG
CGCCGAACCACAATCGCAAACATTCGTTCTCCGCCTAGAGAAGGTTGTTA
TTACCCTGCGCGCCGAGTCACCCGATGCATTTGGGCGATGGGTGGATGCC
CTGAATCGTTCGGCGGGTACTTCGTTTGAGAGATTTTACCGACGGGAGCG
TTGCATCGGACGCGGCCATTTCTCGCAGGTGTATCAAGCTAGCGATCGTT
CTACCGGTGATAAGTTTGCCGTCAAGGTGATTAACAAGGACAAGAATGAC
ATGGAGAAGAGCAAGAAATTTATCAGACGTGAAGTCAAAGTGCTCTCCGT
CACTGACCATCCCAACCTTGTACGCGCCGTCGACTTTTTCTCACATCGAG
GCAAGCCACACATTGTGCTCGAGTACGTTGAGGGAGGCTCTCTAAGAGAG
TTGATTCGGAAGAAGAAGCGGTTGAGCGAGTCGGAGGCACGGCCCGTTCT
TCGCGGAATACTTAGCGCGGTAACGTACCTACATTCCGTTAACATTGTGC
ACCGCGATATCAAGCCAGAAAACGTACTAATGGAACGACAAGACCTACCC
AAATTAACTGACTTTGGCTTGGCAACTTTTGTGAACGAGGACAAACATAT
TCACTCCGTGGTGGGCACACCGAGTTACGTGGCGCCGGAGGTGATTCGTA
ACGTGCCATACGGACCGCCTGCGGACGTGTGGTCTTGTGGAGTATTGCTT
TACTTCATGCTCGCGGGAGAACGGCCGTTCACTGGCGATACCAGGGAGGA
CATCAAGCGTGCAGTACTGGCCGGAGACCTCAAGTTTCCCAGCCAGCTAT
TTGGGGACTGTTCTCCTGAGATCAAGCATCTTATCAACCTGATGCTGAAC
TTTGAGCAGCGACTTCGAATCAGCGCGGAGAATGCGCTGCAACACCCTTG
GCTGTCTCGCTGA
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