Ggra3332.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3332.t1
Unique Name	Ggra3332.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	741

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:32675..34897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	570952.ATVH01000011_gene4
Preferred name	ppdK
PFAMs	PEP-utilizers,PEP-utilizers_C,PPDK_N
Max annot lvl	204441\|Rhodospirillales
KEGG rclass	RC00002,RC00015
KEGG ko	ko:K01006
KEGG Reaction	R00206
KEGG Pathway	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200
KEGG Module	M00169,M00171,M00172,M00173
Evalue	0.0
EggNOG OGs	COG0574@1\|root,COG1080@1\|root,COG0574@2\|Bacteria,COG1080@2\|Bacteria,1MU0R@1224\|Proteobacteria,2TR3C@28211\|Alphaproteobacteria,2JP8K@204441\|Rhodospirillales
EC	2.7.9.1
Description	Belongs to the PEP-utilizing enzyme family
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3332	Ggra3332	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 32675..34897 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3332.t1.start1	Ggra3332.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 32675..32677 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3332.t1.CDS1	Ggra3332.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 32675..34897 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3332.t1.exon1	Ggra3332.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 32675..34897 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3332.t1.stop1	Ggra3332.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 34895..34897 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3332.t1	Ggra3332.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 32675..34897 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:32675..34897+
coding sequence from alignment at tig00000189_pilon:32675..34897+

mRNA sequence

>Ggra3332.t1 ID=Ggra3332.t1|Name=Ggra3332.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp
MGVDHHHFEDILDHHKKVCGLSLDTDLTAHDWQDVICEYKLKIHEQTGRD
FPQDPQMQLWDAIAAVFRSWTNTRAVTYRRLHSIPSDWGTAVNVQAMVFG
NMGDDSATGVAFTRDPATGKNTLYGEYLVNAQGEDVVAGIRTPQQLTVAG
KLAHRSKLPAMEEVMPEVFQELNAVRHNLEKHYGDMQDIEFTVQRGKLYM
LQTRVGKRTASAALKIACDMVDEGVINEDQAIMRVDPASLNQLLHPTLDP
KAERQIIGRGLPASPGAASGHIVFSADEAERLAHVGEKAILCRAETSPED
IHGMHAAVGIVTTRGGMTSHAAVVARGMGRPCVAGASEISIDYEANTMSV
RGLMLKEGDLVTLDGGSGEVMSGFVPTIEPELSGDFSRLMGWADARRKLG
VLVNADTPKDCRKALEFGAEGIGLCRTEHMFFEAGRIVAVREMILANSEE
GRRKALTKVLPMQRDDFAEIFRIMHGLPVTIRLLDPPLHEFLPHGEAEMH
EVAEAAGVSVEFVRERVIKVREVNPMLGHRGCRLGITYPEVYEMQTRAII
EAAAIVAKETDFKVEVEIMIPFVAVESELRIVKENVDEVARDVLKGDKQK
VHYVVGTMIELPRAALNAGKIARQAHFFSFGTNDLTQTTFGLSRDDAGSF
LPTYENRGILEGDPFVHLDIEGVGELMRIAVERGRKTRPELKLCLCGEHG
GDAASVKFCHELGLDSVSCSPYRVPIARLAAAQAALSLST*

spliced messenger RNA

>Ggra3332.t1 ID=Ggra3332.t1|Name=Ggra3332.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000189_pilon:32675..34897+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTGGATCATCATCACTTTGAAGATATTCTAGACCACCATAAGAA
GGTATGTGGACTTTCCTTGGACACGGACTTAACAGCTCATGATTGGCAAG
ACGTGATTTGCGAGTACAAGCTCAAGATTCATGAACAAACTGGTCGGGAC
TTTCCtcaagatccccagatgcaattgtgggatgctatcgccgccgtctt
ccgttcttggacgaatacgcgagctgtgacttatagaagactacataGTA
TTCCCAGTGACTGGGGCACTGCTGTCAATGTACAAGCTATGGTGTTTGGA
AATATGGGCGATGACTCCGCTACTGGTGTGGCTTTCACACGCGATCCTGC
TACTGGTAAGAATACTTTGTATGGTGAGTATCTTGTCAATGCTCAAGGAG
AAGATGTCGTGGCTGGAATCCGTACTCCGCAACAACTGACTGTTGCTGGT
AAGTTAGCGCATCGTTCAAAGTTACCTGCCATGGAAGAGGTCATGCCGGA
AGTTTTCCAGGAATTGAATGCTGTGCGCCACAATCTGGAGAAGCATTATG
GAGATATGCAGGACATTGAGTTCACTGTTCAACGCGGAAAGTTGTACATG
TTGCAAACCCGTGTCGGAAAGCGAACTGCTAGTGCTGCTTTGAAGATTGC
GTGCGATATGGTTGATGAAGGTGTTATCAATGAGGATCAGGCTATTATGA
GAGTTGACCCCGCCTCTCTCAACCAGCTGCTGCATCCGACATTGGACCCG
AAAGCAGAGCGCCAAATCATCGGACGTGGGTTGCCTGCTTCACCAGGAGC
AGCTTCGGGACACATTGTTTTTAGTGCCGATGAAGCCGAGCGGCTCGCTC
ATGTCGGCGAGAAGGCGATTCTGTGCCGCGCAGAAACCTCCCCTGAAGAT
ATTCATGGTATGCATGCTGCTGTCGGAATTGTGACTACGAGGGGTGGTAT
GACAAGCCATGCTGCCGTTGTTGCTCGAGGTATGGGTCGACCATGTGTGG
CTGGCGCTTCTGAAATCAGTATCGACTATGAGGCGAATACAATGAGCGTT
CGCGGGTTGATGTTGAAGGAAGGCGATCTGGTCACCCTTGATGGCGGAAG
CGGAGAGGTAATGTCCGGGTTTGTCCCAACTATTGAACCGGAGCTGTCAG
GAGATTTCTCAAGATTGATGGGATGGGCGGACGCGAGGCGAAAGCTAGGC
GTGCTTGTCAACGCCGACACACCGAAAGACTGCCGCAAAGCGTTAGAATT
TGGGGCAGAGGGTATCGGACTCTGTCGCACAGAACACATGTTCTTTGAAG
CCGGAAGAATCGTCGCAGTGCGTGAAATGATCTTGGCGAATAGTGAAGAA
GGCAGGAGAAAGGCTCTGACGAAAGTTTTGCCAATGCAGCGTGACGACTT
CGCGGAGATTTTCCGCATAATGCATGGACTTCCTGTCACGATTCGCCTCT
TGGACCCGCCGCTGCACGAGTTTCTGCCACATGGTGAGGCAGAGATGCAT
GAAGTTGCGGAAGCTGCTGGCGTGAGCGTTGAATTCGTGCGAGAGCGCGT
AATTAAGGTGCGTGAAGTGAACCCAATGCTGGGACATCGTGGATGTCGGC
TGGGCATAACGTATCCAGAGGTTTATGAGATGCAGACGCGTGCTATCATT
GAAGCAGCTGCTATCGTTGCGAAGGAAACAGACTTCAAAGTCGAAGTGGA
GATCATGATTCCATTTGTCGCAGTTGAGTCTGAGTTACGGATCGTGAAGG
AGAATGTTGACGAAGTTGCGAGGGACGTTCTAAAGGGTGACAAGCAGAAA
GTGCACTACGTGGTTGGAACAATGATCGAGCTGCCTCGTGCTGCTTTGAA
CGCTGGGAAGATTGCCAGACAAGCGCACTTTTTCAGCTTTGGGACGAATG
ACCTAACACAGACGACATTCGGTCTATCGCGTGACGATGCAGGTAGTTTT
CTGCCTACATATGAGAACCGAGGGATACTCGAAGGCGATCCTTTTGTGCA
TCTTGATATCGAGGGAGTTGGTGAGTTGATGCGGATTGCTGTGGAACGGG
GAAGGAAGACGCGACCAGAGCTGAAGCTGTGTCTGTGTGGCGAACATGGA
GGCGACGCCGCATCcgtgaagttctgtcatgagctcggccttgactctgt
gtcttgttcgccataccgcgttcctatcgcccgacttgcggcagcccaag
ctgcgctgagcctgagcACGTAG

protein sequence of Ggra3332.t1

>Ggra3332.t1 ID=Ggra3332.t1|Name=Ggra3332.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=741bp
MGVDHHHFEDILDHHKKVCGLSLDTDLTAHDWQDVICEYKLKIHEQTGRD
FPQDPQMQLWDAIAAVFRSWTNTRAVTYRRLHSIPSDWGTAVNVQAMVFG
NMGDDSATGVAFTRDPATGKNTLYGEYLVNAQGEDVVAGIRTPQQLTVAG
KLAHRSKLPAMEEVMPEVFQELNAVRHNLEKHYGDMQDIEFTVQRGKLYM
LQTRVGKRTASAALKIACDMVDEGVINEDQAIMRVDPASLNQLLHPTLDP
KAERQIIGRGLPASPGAASGHIVFSADEAERLAHVGEKAILCRAETSPED
IHGMHAAVGIVTTRGGMTSHAAVVARGMGRPCVAGASEISIDYEANTMSV
RGLMLKEGDLVTLDGGSGEVMSGFVPTIEPELSGDFSRLMGWADARRKLG
VLVNADTPKDCRKALEFGAEGIGLCRTEHMFFEAGRIVAVREMILANSEE
GRRKALTKVLPMQRDDFAEIFRIMHGLPVTIRLLDPPLHEFLPHGEAEMH
EVAEAAGVSVEFVRERVIKVREVNPMLGHRGCRLGITYPEVYEMQTRAII
EAAAIVAKETDFKVEVEIMIPFVAVESELRIVKENVDEVARDVLKGDKQK
VHYVVGTMIELPRAALNAGKIARQAHFFSFGTNDLTQTTFGLSRDDAGSF
LPTYENRGILEGDPFVHLDIEGVGELMRIAVERGRKTRPELKLCLCGEHG
GDAASVKFCHELGLDSVSCSPYRVPIARLAAAQAALSLST*

mRNA from alignment at tig00000189_pilon:32675..34897+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3332.t1 ID=Ggra3332.t1|Name=Ggra3332.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000189_pilon:32675..34897+ (Gracilaria gracilis GNS1m male)
ATGGGAGTGGATCATCATCACTTTGAAGATATTCTAGACCACCATAAGAA
GGTATGTGGACTTTCCTTGGACACGGACTTAACAGCTCATGATTGGCAAG
ACGTGATTTGCGAGTACAAGCTCAAGATTCATGAACAAACTGGTCGGGAC
TTTCCtcaagatccccagatgcaattgtgggatgctatcgccgccgtctt
ccgttcttggacgaatacgcgagctgtgacttatagaagactacataGTA
TTCCCAGTGACTGGGGCACTGCTGTCAATGTACAAGCTATGGTGTTTGGA
AATATGGGCGATGACTCCGCTACTGGTGTGGCTTTCACACGCGATCCTGC
TACTGGTAAGAATACTTTGTATGGTGAGTATCTTGTCAATGCTCAAGGAG
AAGATGTCGTGGCTGGAATCCGTACTCCGCAACAACTGACTGTTGCTGGT
AAGTTAGCGCATCGTTCAAAGTTACCTGCCATGGAAGAGGTCATGCCGGA
AGTTTTCCAGGAATTGAATGCTGTGCGCCACAATCTGGAGAAGCATTATG
GAGATATGCAGGACATTGAGTTCACTGTTCAACGCGGAAAGTTGTACATG
TTGCAAACCCGTGTCGGAAAGCGAACTGCTAGTGCTGCTTTGAAGATTGC
GTGCGATATGGTTGATGAAGGTGTTATCAATGAGGATCAGGCTATTATGA
GAGTTGACCCCGCCTCTCTCAACCAGCTGCTGCATCCGACATTGGACCCG
AAAGCAGAGCGCCAAATCATCGGACGTGGGTTGCCTGCTTCACCAGGAGC
AGCTTCGGGACACATTGTTTTTAGTGCCGATGAAGCCGAGCGGCTCGCTC
ATGTCGGCGAGAAGGCGATTCTGTGCCGCGCAGAAACCTCCCCTGAAGAT
ATTCATGGTATGCATGCTGCTGTCGGAATTGTGACTACGAGGGGTGGTAT
GACAAGCCATGCTGCCGTTGTTGCTCGAGGTATGGGTCGACCATGTGTGG
CTGGCGCTTCTGAAATCAGTATCGACTATGAGGCGAATACAATGAGCGTT
CGCGGGTTGATGTTGAAGGAAGGCGATCTGGTCACCCTTGATGGCGGAAG
CGGAGAGGTAATGTCCGGGTTTGTCCCAACTATTGAACCGGAGCTGTCAG
GAGATTTCTCAAGATTGATGGGATGGGCGGACGCGAGGCGAAAGCTAGGC
GTGCTTGTCAACGCCGACACACCGAAAGACTGCCGCAAAGCGTTAGAATT
TGGGGCAGAGGGTATCGGACTCTGTCGCACAGAACACATGTTCTTTGAAG
CCGGAAGAATCGTCGCAGTGCGTGAAATGATCTTGGCGAATAGTGAAGAA
GGCAGGAGAAAGGCTCTGACGAAAGTTTTGCCAATGCAGCGTGACGACTT
CGCGGAGATTTTCCGCATAATGCATGGACTTCCTGTCACGATTCGCCTCT
TGGACCCGCCGCTGCACGAGTTTCTGCCACATGGTGAGGCAGAGATGCAT
GAAGTTGCGGAAGCTGCTGGCGTGAGCGTTGAATTCGTGCGAGAGCGCGT
AATTAAGGTGCGTGAAGTGAACCCAATGCTGGGACATCGTGGATGTCGGC
TGGGCATAACGTATCCAGAGGTTTATGAGATGCAGACGCGTGCTATCATT
GAAGCAGCTGCTATCGTTGCGAAGGAAACAGACTTCAAAGTCGAAGTGGA
GATCATGATTCCATTTGTCGCAGTTGAGTCTGAGTTACGGATCGTGAAGG
AGAATGTTGACGAAGTTGCGAGGGACGTTCTAAAGGGTGACAAGCAGAAA
GTGCACTACGTGGTTGGAACAATGATCGAGCTGCCTCGTGCTGCTTTGAA
CGCTGGGAAGATTGCCAGACAAGCGCACTTTTTCAGCTTTGGGACGAATG
ACCTAACACAGACGACATTCGGTCTATCGCGTGACGATGCAGGTAGTTTT
CTGCCTACATATGAGAACCGAGGGATACTCGAAGGCGATCCTTTTGTGCA
TCTTGATATCGAGGGAGTTGGTGAGTTGATGCGGATTGCTGTGGAACGGG
GAAGGAAGACGCGACCAGAGCTGAAGCTGTGTCTGTGTGGCGAACATGGA
GGCGACGCCGCATCcgtgaagttctgtcatgagctcggccttgactctgt
gtcttgttcgccataccgcgttcctatcgcccgacttgcggcagcccaag
ctgcgctgagcctgagcACGTAG

Coding sequence (CDS) from alignment at tig00000189_pilon:32675..34897+

>Ggra3332.t1 ID=Ggra3332.t1|Name=Ggra3332.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2223bp|location=Sequence derived from alignment at tig00000189_pilon:32675..34897+ (Gracilaria gracilis GNS1m male)
ATGGGAGTGGATCATCATCACTTTGAAGATATTCTAGACCACCATAAGAA
GGTATGTGGACTTTCCTTGGACACGGACTTAACAGCTCATGATTGGCAAG
ACGTGATTTGCGAGTACAAGCTCAAGATTCATGAACAAACTGGTCGGGAC
TTTCCtcaagatccccagatgcaattgtgggatgctatcgccgccgtctt
ccgttcttggacgaatacgcgagctgtgacttatagaagactacataGTA
TTCCCAGTGACTGGGGCACTGCTGTCAATGTACAAGCTATGGTGTTTGGA
AATATGGGCGATGACTCCGCTACTGGTGTGGCTTTCACACGCGATCCTGC
TACTGGTAAGAATACTTTGTATGGTGAGTATCTTGTCAATGCTCAAGGAG
AAGATGTCGTGGCTGGAATCCGTACTCCGCAACAACTGACTGTTGCTGGT
AAGTTAGCGCATCGTTCAAAGTTACCTGCCATGGAAGAGGTCATGCCGGA
AGTTTTCCAGGAATTGAATGCTGTGCGCCACAATCTGGAGAAGCATTATG
GAGATATGCAGGACATTGAGTTCACTGTTCAACGCGGAAAGTTGTACATG
TTGCAAACCCGTGTCGGAAAGCGAACTGCTAGTGCTGCTTTGAAGATTGC
GTGCGATATGGTTGATGAAGGTGTTATCAATGAGGATCAGGCTATTATGA
GAGTTGACCCCGCCTCTCTCAACCAGCTGCTGCATCCGACATTGGACCCG
AAAGCAGAGCGCCAAATCATCGGACGTGGGTTGCCTGCTTCACCAGGAGC
AGCTTCGGGACACATTGTTTTTAGTGCCGATGAAGCCGAGCGGCTCGCTC
ATGTCGGCGAGAAGGCGATTCTGTGCCGCGCAGAAACCTCCCCTGAAGAT
ATTCATGGTATGCATGCTGCTGTCGGAATTGTGACTACGAGGGGTGGTAT
GACAAGCCATGCTGCCGTTGTTGCTCGAGGTATGGGTCGACCATGTGTGG
CTGGCGCTTCTGAAATCAGTATCGACTATGAGGCGAATACAATGAGCGTT
CGCGGGTTGATGTTGAAGGAAGGCGATCTGGTCACCCTTGATGGCGGAAG
CGGAGAGGTAATGTCCGGGTTTGTCCCAACTATTGAACCGGAGCTGTCAG
GAGATTTCTCAAGATTGATGGGATGGGCGGACGCGAGGCGAAAGCTAGGC
GTGCTTGTCAACGCCGACACACCGAAAGACTGCCGCAAAGCGTTAGAATT
TGGGGCAGAGGGTATCGGACTCTGTCGCACAGAACACATGTTCTTTGAAG
CCGGAAGAATCGTCGCAGTGCGTGAAATGATCTTGGCGAATAGTGAAGAA
GGCAGGAGAAAGGCTCTGACGAAAGTTTTGCCAATGCAGCGTGACGACTT
CGCGGAGATTTTCCGCATAATGCATGGACTTCCTGTCACGATTCGCCTCT
TGGACCCGCCGCTGCACGAGTTTCTGCCACATGGTGAGGCAGAGATGCAT
GAAGTTGCGGAAGCTGCTGGCGTGAGCGTTGAATTCGTGCGAGAGCGCGT
AATTAAGGTGCGTGAAGTGAACCCAATGCTGGGACATCGTGGATGTCGGC
TGGGCATAACGTATCCAGAGGTTTATGAGATGCAGACGCGTGCTATCATT
GAAGCAGCTGCTATCGTTGCGAAGGAAACAGACTTCAAAGTCGAAGTGGA
GATCATGATTCCATTTGTCGCAGTTGAGTCTGAGTTACGGATCGTGAAGG
AGAATGTTGACGAAGTTGCGAGGGACGTTCTAAAGGGTGACAAGCAGAAA
GTGCACTACGTGGTTGGAACAATGATCGAGCTGCCTCGTGCTGCTTTGAA
CGCTGGGAAGATTGCCAGACAAGCGCACTTTTTCAGCTTTGGGACGAATG
ACCTAACACAGACGACATTCGGTCTATCGCGTGACGATGCAGGTAGTTTT
CTGCCTACATATGAGAACCGAGGGATACTCGAAGGCGATCCTTTTGTGCA
TCTTGATATCGAGGGAGTTGGTGAGTTGATGCGGATTGCTGTGGAACGGG
GAAGGAAGACGCGACCAGAGCTGAAGCTGTGTCTGTGTGGCGAACATGGA
GGCGACGCCGCATCcgtgaagttctgtcatgagctcggccttgactctgt
gtcttgttcgccataccgcgttcctatcgcccgacttgcggcagcccaag
ctgcgctgagcctgagcACGTAG