Ggra3382.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3382.t1
Unique NameGgra3382.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:177888..178661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3382Ggra3382Gracilaria gracilis GNS1m malegenetig00000189_pilon 177888..178661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3382.t1Ggra3382.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 177888..178661 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3382.t1.stop1Ggra3382.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 177888..177890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3382.t1.CDS1Ggra3382.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 177888..178336 -
Ggra3382.t1.CDS2Ggra3382.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 178415..178661 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3382.t1.exon1Ggra3382.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 177888..178336 -
Ggra3382.t1.exon2Ggra3382.t1.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 178415..178661 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3382.t1.intron1Ggra3382.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 178337..178414 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3382.t1.start1Ggra3382.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 178659..178661 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3382.t1 ID=Ggra3382.t1|Name=Ggra3382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=232bp
MKHHVASSTEGNDVVAIDLSPSMPAIRAPSSIYMASSAVSKRMPNAIPVR
TEFVFCASQPHTSVLLCGDWCDWHPIHMNLEQDYVWSVITVVPNGYREFF
YMVDGTTMLSTKHPTNAQGTHNWRTVYGPPRRARNRASSLHRTPFERAMD
SLSESLRTFLVAAFQPDQLSKRTERRLQSQLQPQVVRDIESSLVCAESNG
AWYSSCANPIRVAVLFIVCYGAGVCVVRVFR*
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spliced messenger RNA

>Ggra3382.t1 ID=Ggra3382.t1|Name=Ggra3382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000189_pilon:177888..178661- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCATCACGTTGCGAGTTCGACGGAGGGGAACGATGTTGTGGCCAT
CGATCTTTCGCCGTCGATGCCTGCCATACGAGCACCGTCTTCCATATACA
TGGCCTCCTCGGCTGTGTCAAAGCGCATGCCTAATGCCATCCCGGTGCGC
ACAGAGTTCGTGTTCTGCGCCTCGCAGCCGCACACTTCGGTGCTGCTGTG
CGGCGACTGGTGCGATTGGCATCCCATTCACATGAACCTTGAACAAGATT
ATGTATGGTCCGTTATAACTGTCGTTCCGAATGGGTACAGAGAATTCTTC
TACATGGTGGACGGAACTACCATGTTGAGCACAAAGCACCCCACCAATGC
ACAAGGCACGCACAACTGGCGAACAGTGTACGGCCCACCACGTCGAGCGA
GAAATCGTGCATCGTCGCTGCATCGTACGCCATTTGAACGTGCCATGGAC
TCGCTGTCAGAGTCTCTCCGTACCTTCCTAGTAGCAGCTTTCCAACCAGA
CCAGCTGTCAAAGCGAACGGAACGTCGATTGCAATCTCAACTACAGCCGC
AAGTGGTACGCGATATTGAGAGCTCTCTCGTGTGTGCGGAGAGCAATGGA
GCGTGGTATTCCTCGTGCGCGAACCCTATCCGTGTGGCAGTGCTCTTCAT
TGTCTGCTACGGGGCGGGAGTTTGCGTTGTTCGTGTGTTTCGATAG
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protein sequence of Ggra3382.t1

>Ggra3382.t1 ID=Ggra3382.t1|Name=Ggra3382.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MKHHVASSTEGNDVVAIDLSPSMPAIRAPSSIYMASSAVSKRMPNAIPVR
TEFVFCASQPHTSVLLCGDWCDWHPIHMNLEQDYVWSVITVVPNGYREFF
YMVDGTTMLSTKHPTNAQGTHNWRTVYGPPRRARNRASSLHRTPFERAMD
SLSESLRTFLVAAFQPDQLSKRTERRLQSQLQPQVVRDIESSLVCAESNG
AWYSSCANPIRVAVLFIVCYGAGVCVVRVFR*
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mRNA from alignment at tig00000189_pilon:177888..178661-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3382.t1 ID=Ggra3382.t1|Name=Ggra3382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000189_pilon:177888..178661- (Gracilaria gracilis GNS1m male)
ATGAAGCATCACGTTGCGAGTTCGACGGAGGGGAACGATGTTGTGGCCAT
CGATCTTTCGCCGTCGATGCCTGCCATACGAGCACCGTCTTCCATATACA
TGGCCTCCTCGGCTGTGTCAAAGCGCATGCCTAATGCCATCCCGGTGCGC
ACAGAGTTCGTGTTCTGCGCCTCGCAGCCGCACACTTCGGTGCTGCTGTG
CGGCGACTGGTGCGATTGGCATCCCATTCACATGAACCTTGAACAAGGTA
AGAGAGCAATACCGTCTGTTGGCGCGCATGCATCAAGTTGCACCCCGAGC
TCGCCTCTGACATCGCCGCGCGCAGATTATGTATGGTCCGTTATAACTGT
CGTTCCGAATGGGTACAGAGAATTCTTCTACATGGTGGACGGAACTACCA
TGTTGAGCACAAAGCACCCCACCAATGCACAAGGCACGCACAACTGGCGA
ACAGTGTACGGCCCACCACGTCGAGCGAGAAATCGTGCATCGTCGCTGCA
TCGTACGCCATTTGAACGTGCCATGGACTCGCTGTCAGAGTCTCTCCGTA
CCTTCCTAGTAGCAGCTTTCCAACCAGACCAGCTGTCAAAGCGAACGGAA
CGTCGATTGCAATCTCAACTACAGCCGCAAGTGGTACGCGATATTGAGAG
CTCTCTCGTGTGTGCGGAGAGCAATGGAGCGTGGTATTCCTCGTGCGCGA
ACCCTATCCGTGTGGCAGTGCTCTTCATTGTCTGCTACGGGGCGGGAGTT
TGCGTTGTTCGTGTGTTTCGATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:177888..178661-

>Ggra3382.t1 ID=Ggra3382.t1|Name=Ggra3382.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000189_pilon:177888..178661- (Gracilaria gracilis GNS1m male)
ATGAAGCATCACGTTGCGAGTTCGACGGAGGGGAACGATGTTGTGGCCAT
CGATCTTTCGCCGTCGATGCCTGCCATACGAGCACCGTCTTCCATATACA
TGGCCTCCTCGGCTGTGTCAAAGCGCATGCCTAATGCCATCCCGGTGCGC
ACAGAGTTCGTGTTCTGCGCCTCGCAGCCGCACACTTCGGTGCTGCTGTG
CGGCGACTGGTGCGATTGGCATCCCATTCACATGAACCTTGAACAAGATT
ATGTATGGTCCGTTATAACTGTCGTTCCGAATGGGTACAGAGAATTCTTC
TACATGGTGGACGGAACTACCATGTTGAGCACAAAGCACCCCACCAATGC
ACAAGGCACGCACAACTGGCGAACAGTGTACGGCCCACCACGTCGAGCGA
GAAATCGTGCATCGTCGCTGCATCGTACGCCATTTGAACGTGCCATGGAC
TCGCTGTCAGAGTCTCTCCGTACCTTCCTAGTAGCAGCTTTCCAACCAGA
CCAGCTGTCAAAGCGAACGGAACGTCGATTGCAATCTCAACTACAGCCGC
AAGTGGTACGCGATATTGAGAGCTCTCTCGTGTGTGCGGAGAGCAATGGA
GCGTGGTATTCCTCGTGCGCGAACCCTATCCGTGTGGCAGTGCTCTTCAT
TGTCTGCTACGGGGCGGGAGTTTGCGTTGTTCGTGTGTTTCGATAG
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