Ggra3385.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3385.t1
Unique NameGgra3385.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:185048..185692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010104520.1
PFAMsGSHPx
Max annot lvl35493|Streptophyta
KEGG rclassRC00011,RC00982
KEGG koko:K00432
KEGG ReactionR00274,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04918,map00480,map00590,map04918
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0080167
Evalue9.57e-44
EggNOG OGsCOG0386@1|root,KOG1651@2759|Eukaryota,37K04@33090|Viridiplantae,3G9CQ@35493|Streptophyta,4JEE8@91835|fabids
EC1.11.1.9
DescriptionBelongs to the glutathione peroxidase family
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3385Ggra3385Gracilaria gracilis GNS1m malegenetig00000189_pilon 185048..185692 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3385.t1.start1Ggra3385.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 185048..185050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3385.t1.CDS1Ggra3385.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 185048..185692 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3385.t1.exon1Ggra3385.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 185048..185692 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3385.t1.stop1Ggra3385.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 185690..185692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3385.t1Ggra3385.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 185048..185692 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3385.t1 ID=Ggra3385.t1|Name=Ggra3385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
LHSEQHPRISRRDFSRLVAVGVLAHSFGSSLHEARAESRSAYDIVAAKDG
KPFSLNTYQNKVTLFVNVATYCALTPQYEGLVTLHEKYQPRGFEIVASPC
DQFGHQEPGSNQEICAFAKQQFGAKFLLLDKLNVNDGPQGVAPLYQFLKS
TSPEGTGQRVSWNFEKFLVGTDGKVLRRYKPGILPENIDRDIKWALDHPG
ETLPPKKKPSLGVE*
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spliced messenger RNA

>Ggra3385.t1 ID=Ggra3385.t1|Name=Ggra3385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000189_pilon:185048..185692+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCATTCGGAGCAACACCCCAGGATTTCTCGTCGCGACTTTTCCCGCCT
CGTTGCTGTTGGCGTCTTGGCGCATAGTTTTGGTTCTTCGTTGCACGAAG
CCCGGGCAGAAAGTCGCTCTGCGTATGATATTGTTGCAGCGAAAGACGGG
AAACCATTCTCTTTGAACACTTATCAGAACAAAGTCACCCTTTTTGTGAA
CGTTGCTACATATTGCGCCCTGACACCACAATACGAGGGCCTCGTCACTC
TTCACGAGAAGTATCAACCTCGTGGCTTTGAAATTGTGGCGTCGCCCTGC
GACCAGTTTGGTCATCAGGAACCCGGCTCGAATCAAGAGATCTGCGCCTT
TGCGAAGCAGCAGTTCGGGGCCAAGTTCTTACTGTTGGACAAACTAAACG
TGAACGACGGACCACAGGGAGTCGCTCCGCTCTACCAGTTTTTGAAGAGT
ACGAGTCCGGAAGGAACTGGACAGCGGGTTAGCTGGAATTTTGAGAAGTT
TCTGGTGGGGACAGACGGCAAAGTCTTGCGGCGCTACAAGCCTGGCATTC
TTCCTGAGAATATTGACAGAGATATTAAGTGGGCTCTGGACCATCCCGGT
GAAACTTTGCCCCCCAAGAAGAAGCCGTCTCTTGGAGTCGAATAA
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protein sequence of Ggra3385.t1

>Ggra3385.t1 ID=Ggra3385.t1|Name=Ggra3385.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
LHSEQHPRISRRDFSRLVAVGVLAHSFGSSLHEARAESRSAYDIVAAKDG
KPFSLNTYQNKVTLFVNVATYCALTPQYEGLVTLHEKYQPRGFEIVASPC
DQFGHQEPGSNQEICAFAKQQFGAKFLLLDKLNVNDGPQGVAPLYQFLKS
TSPEGTGQRVSWNFEKFLVGTDGKVLRRYKPGILPENIDRDIKWALDHPG
ETLPPKKKPSLGVE*
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mRNA from alignment at tig00000189_pilon:185048..185692+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3385.t1 ID=Ggra3385.t1|Name=Ggra3385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000189_pilon:185048..185692+ (Gracilaria gracilis GNS1m male)
TTGCATTCGGAGCAACACCCCAGGATTTCTCGTCGCGACTTTTCCCGCCT
CGTTGCTGTTGGCGTCTTGGCGCATAGTTTTGGTTCTTCGTTGCACGAAG
CCCGGGCAGAAAGTCGCTCTGCGTATGATATTGTTGCAGCGAAAGACGGG
AAACCATTCTCTTTGAACACTTATCAGAACAAAGTCACCCTTTTTGTGAA
CGTTGCTACATATTGCGCCCTGACACCACAATACGAGGGCCTCGTCACTC
TTCACGAGAAGTATCAACCTCGTGGCTTTGAAATTGTGGCGTCGCCCTGC
GACCAGTTTGGTCATCAGGAACCCGGCTCGAATCAAGAGATCTGCGCCTT
TGCGAAGCAGCAGTTCGGGGCCAAGTTCTTACTGTTGGACAAACTAAACG
TGAACGACGGACCACAGGGAGTCGCTCCGCTCTACCAGTTTTTGAAGAGT
ACGAGTCCGGAAGGAACTGGACAGCGGGTTAGCTGGAATTTTGAGAAGTT
TCTGGTGGGGACAGACGGCAAAGTCTTGCGGCGCTACAAGCCTGGCATTC
TTCCTGAGAATATTGACAGAGATATTAAGTGGGCTCTGGACCATCCCGGT
GAAACTTTGCCCCCCAAGAAGAAGCCGTCTCTTGGAGTCGAATAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:185048..185692+

>Ggra3385.t1 ID=Ggra3385.t1|Name=Ggra3385.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000189_pilon:185048..185692+ (Gracilaria gracilis GNS1m male)
TTGCATTCGGAGCAACACCCCAGGATTTCTCGTCGCGACTTTTCCCGCCT
CGTTGCTGTTGGCGTCTTGGCGCATAGTTTTGGTTCTTCGTTGCACGAAG
CCCGGGCAGAAAGTCGCTCTGCGTATGATATTGTTGCAGCGAAAGACGGG
AAACCATTCTCTTTGAACACTTATCAGAACAAAGTCACCCTTTTTGTGAA
CGTTGCTACATATTGCGCCCTGACACCACAATACGAGGGCCTCGTCACTC
TTCACGAGAAGTATCAACCTCGTGGCTTTGAAATTGTGGCGTCGCCCTGC
GACCAGTTTGGTCATCAGGAACCCGGCTCGAATCAAGAGATCTGCGCCTT
TGCGAAGCAGCAGTTCGGGGCCAAGTTCTTACTGTTGGACAAACTAAACG
TGAACGACGGACCACAGGGAGTCGCTCCGCTCTACCAGTTTTTGAAGAGT
ACGAGTCCGGAAGGAACTGGACAGCGGGTTAGCTGGAATTTTGAGAAGTT
TCTGGTGGGGACAGACGGCAAAGTCTTGCGGCGCTACAAGCCTGGCATTC
TTCCTGAGAATATTGACAGAGATATTAAGTGGGCTCTGGACCATCCCGGT
GAAACTTTGCCCCCCAAGAAGAAGCCGTCTCTTGGAGTCGAATAA
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