Ggra4945.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4945.t1
Unique NameGgra4945.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:26445..27148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4945Ggra4945Gracilaria gracilis GNS1m malegenetig00000014_pilon 26445..27148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4945.t1Ggra4945.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 26445..27148 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4945.t1.stop1Ggra4945.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 26445..26447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4945.t1.CDS1Ggra4945.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 26445..26998 -
Ggra4945.t1.CDS2Ggra4945.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000014_pilon 27136..27148 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4945.t1.exon1Ggra4945.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 26445..26998 -
Ggra4945.t1.exon2Ggra4945.t1.exon2Gracilaria gracilis GNS1m maleexontig00000014_pilon 27136..27148 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4945.t1.intron1Ggra4945.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000014_pilon 26999..27135 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4945.t1.start1Ggra4945.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 27146..27148 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4945.t1 ID=Ggra4945.t1|Name=Ggra4945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MTLQISPSLLFVFDFDYTLVPVNTDLQPVHRLAPDLLSSHINSNAVAAAA
AARAAGWASLMGDVLRDLRTRQLPSSLFVRSVEDGAEMAGATRAMLSAPF
DTPHARWAVVADVNSLFIGAGQRTNGIAAHSLDAGIFSNAVQVRCDHGVS
VRPFATQSFGALAATAPLPMSIKAGHCLTSAVTMQTPA*
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spliced messenger RNA

>Ggra4945.t1 ID=Ggra4945.t1|Name=Ggra4945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000014_pilon:26445..27148- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTACAGATATCGCCGTCGCTGCTGTTCGTGTTCGACTTCGACTA
CACCTTGGTGCCGGTCAACACGGACCTGCAGCCCGTTCACCGCCTGGCGC
CCGACCTGCTGTCGTCGCACATCAACTCAAACGCCGTCGCAGCGGCGGCG
GCGGCGCGTGCCGCCGGCTGGGCGTCGCTCATGGGCGACGTGCTTCGCGA
CCTACGCACGCGCCAGCTGCCGTCGTCGCTCTTCGTGCGCAGCGTAGAGG
ACGGCGCAGAGATGGCCGGCGCCACGCGCGCCATGCTCAGCGCGCCCTTC
GACACGCCGCACGCGCGCTGGGCTGTCGTAGCCGACGTCAACTCGCTGTT
CATCGGAGCGGGGCAGCGCACTAACGGCATCGCGGCGCACAGTCTCGACG
CGGGCATCTTCAGCAACGCGGTGCAAGTGCGGTGCGACCACGGCGTAAGC
GTGCGGCCGTTCGCCACACAGTCGTTTGGCGCACTGGCGGCGACAGCTCC
GCTGCCCATGTCTATTAAGGCTGGACATTGTCTAACCTCCGCCGTGACAA
TGCAGACGCCGGCATGA
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protein sequence of Ggra4945.t1

>Ggra4945.t1 ID=Ggra4945.t1|Name=Ggra4945.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MTLQISPSLLFVFDFDYTLVPVNTDLQPVHRLAPDLLSSHINSNAVAAAA
AARAAGWASLMGDVLRDLRTRQLPSSLFVRSVEDGAEMAGATRAMLSAPF
DTPHARWAVVADVNSLFIGAGQRTNGIAAHSLDAGIFSNAVQVRCDHGVS
VRPFATQSFGALAATAPLPMSIKAGHCLTSAVTMQTPA*
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mRNA from alignment at tig00000014_pilon:26445..27148-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4945.t1 ID=Ggra4945.t1|Name=Ggra4945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=704bp|location=Sequence derived from alignment at tig00000014_pilon:26445..27148- (Gracilaria gracilis GNS1m male)
ATGACGTTACAGAGTATGTATACCACGGCGCAAATATCTAATAGACACTG
AATCCTCAGCAGCAGAGCAAGCGGGGAGGGTGGGGCGGGGCGGAGTGGCG
GCAGGGGGGCGCCGCGCCGCTGCCCGCACGCCCGAACCAGCGCGAGATAG
TATCGCCGTCGCTGCTGTTCGTGTTCGACTTCGACTACACCTTGGTGCCG
GTCAACACGGACCTGCAGCCCGTTCACCGCCTGGCGCCCGACCTGCTGTC
GTCGCACATCAACTCAAACGCCGTCGCAGCGGCGGCGGCGGCGCGTGCCG
CCGGCTGGGCGTCGCTCATGGGCGACGTGCTTCGCGACCTACGCACGCGC
CAGCTGCCGTCGTCGCTCTTCGTGCGCAGCGTAGAGGACGGCGCAGAGAT
GGCCGGCGCCACGCGCGCCATGCTCAGCGCGCCCTTCGACACGCCGCACG
CGCGCTGGGCTGTCGTAGCCGACGTCAACTCGCTGTTCATCGGAGCGGGG
CAGCGCACTAACGGCATCGCGGCGCACAGTCTCGACGCGGGCATCTTCAG
CAACGCGGTGCAAGTGCGGTGCGACCACGGCGTAAGCGTGCGGCCGTTCG
CCACACAGTCGTTTGGCGCACTGGCGGCGACAGCTCCGCTGCCCATGTCT
ATTAAGGCTGGACATTGTCTAACCTCCGCCGTGACAATGCAGACGCCGGC
ATGA
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Coding sequence (CDS) from alignment at tig00000014_pilon:26445..27148-

>Ggra4945.t1 ID=Ggra4945.t1|Name=Ggra4945.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000014_pilon:26445..27148- (Gracilaria gracilis GNS1m male)
ATGACGTTACAGATATCGCCGTCGCTGCTGTTCGTGTTCGACTTCGACTA
CACCTTGGTGCCGGTCAACACGGACCTGCAGCCCGTTCACCGCCTGGCGC
CCGACCTGCTGTCGTCGCACATCAACTCAAACGCCGTCGCAGCGGCGGCG
GCGGCGCGTGCCGCCGGCTGGGCGTCGCTCATGGGCGACGTGCTTCGCGA
CCTACGCACGCGCCAGCTGCCGTCGTCGCTCTTCGTGCGCAGCGTAGAGG
ACGGCGCAGAGATGGCCGGCGCCACGCGCGCCATGCTCAGCGCGCCCTTC
GACACGCCGCACGCGCGCTGGGCTGTCGTAGCCGACGTCAACTCGCTGTT
CATCGGAGCGGGGCAGCGCACTAACGGCATCGCGGCGCACAGTCTCGACG
CGGGCATCTTCAGCAACGCGGTGCAAGTGCGGTGCGACCACGGCGTAAGC
GTGCGGCCGTTCGCCACACAGTCGTTTGGCGCACTGGCGGCGACAGCTCC
GCTGCCCATGTCTATTAAGGCTGGACATTGTCTAACCTCCGCCGTGACAA
TGCAGACGCCGGCATGA
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