Ggra862.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra862.t1
Unique NameGgra862.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:290139..290672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra862Ggra862Gracilaria gracilis GNS1m malegenetig00000178_pilon 290139..290672 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra862.t1.start1Ggra862.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000178_pilon 290139..290141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra862.t1.CDS1Ggra862.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000178_pilon 290139..290672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra862.t1.exon1Ggra862.t1.exon1Gracilaria gracilis GNS1m maleexontig00000178_pilon 290139..290672 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra862.t1.stop1Ggra862.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000178_pilon 290670..290672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra862.t1Ggra862.t1Gracilaria gracilis GNS1m malepolypeptidetig00000178_pilon 290139..290672 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra862.t1 ID=Ggra862.t1|Name=Ggra862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MVENSPTIPSSGHSTGQATYERRNGRSSASSRDQRCSNNDRTPSARNIES
TDDITPAPVGASTSGGAGPSNVPSAPSDNGEPVFVNGRYRYRCSEPGCQS
IYTHPSNLATHVRLKHMGFTPEHQCDACHLKFPFLSVLRVHQREVHGPKQ
HECPVCHKKMTRKLSLDRHMAAVHPEQ*
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spliced messenger RNA

>Ggra862.t1 ID=Ggra862.t1|Name=Ggra862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000178_pilon:290139..290672+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
aTGGTTGAGAACTCACCTACTATTCCAAGTTCTGGACACTCTACGGGTCA
GGCGACTTACGAAAGGCGTAATGGGCGGAGTTCGGCCTCTTCTCGGGATC
AAAGATGCTCGAATAATGACAGGACCCCATCGGCGAGGAACATAGAGTCC
ACTGATGATATCACTCCTGCTCCTGTAGGAGCGAGTACTTCTGGAGGCGC
TGGCCCTTCAAATGTACCCTCAGCACCTTCTGATAACGGTGAACCGGTGT
TCGTGAATGGGCGGTATCGATATCGGTGTTCAGAGCCCGGTTGCCAATCC
ATTTATACGCATCCTTCAAATCTGGCCACCCATGTGAGACTCAAGCACAT
GGGCTTCACACCTGAGCATCAGTGCGACGCATGCCATTTGAAGTTTCCCT
TCTTGTCTGTTCTTCGAGTCCATCAAAGGGAAGTGCACGGCCCGAAGCAG
CATGAATGCCCTGTGTGCCATAAGAAAATGACTAGGAAACTTAGCTTGGA
TCGACACATGGCAGCGGTACATCCTGAGCAGTAA
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protein sequence of Ggra862.t1

>Ggra862.t1 ID=Ggra862.t1|Name=Ggra862.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MVENSPTIPSSGHSTGQATYERRNGRSSASSRDQRCSNNDRTPSARNIES
TDDITPAPVGASTSGGAGPSNVPSAPSDNGEPVFVNGRYRYRCSEPGCQS
IYTHPSNLATHVRLKHMGFTPEHQCDACHLKFPFLSVLRVHQREVHGPKQ
HECPVCHKKMTRKLSLDRHMAAVHPEQ*
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mRNA from alignment at tig00000178_pilon:290139..290672+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra862.t1 ID=Ggra862.t1|Name=Ggra862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000178_pilon:290139..290672+ (Gracilaria gracilis GNS1m male)
aTGGTTGAGAACTCACCTACTATTCCAAGTTCTGGACACTCTACGGGTCA
GGCGACTTACGAAAGGCGTAATGGGCGGAGTTCGGCCTCTTCTCGGGATC
AAAGATGCTCGAATAATGACAGGACCCCATCGGCGAGGAACATAGAGTCC
ACTGATGATATCACTCCTGCTCCTGTAGGAGCGAGTACTTCTGGAGGCGC
TGGCCCTTCAAATGTACCCTCAGCACCTTCTGATAACGGTGAACCGGTGT
TCGTGAATGGGCGGTATCGATATCGGTGTTCAGAGCCCGGTTGCCAATCC
ATTTATACGCATCCTTCAAATCTGGCCACCCATGTGAGACTCAAGCACAT
GGGCTTCACACCTGAGCATCAGTGCGACGCATGCCATTTGAAGTTTCCCT
TCTTGTCTGTTCTTCGAGTCCATCAAAGGGAAGTGCACGGCCCGAAGCAG
CATGAATGCCCTGTGTGCCATAAGAAAATGACTAGGAAACTTAGCTTGGA
TCGACACATGGCAGCGGTACATCCTGAGCAGTAA
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Coding sequence (CDS) from alignment at tig00000178_pilon:290139..290672+

>Ggra862.t1 ID=Ggra862.t1|Name=Ggra862.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000178_pilon:290139..290672+ (Gracilaria gracilis GNS1m male)
aTGGTTGAGAACTCACCTACTATTCCAAGTTCTGGACACTCTACGGGTCA
GGCGACTTACGAAAGGCGTAATGGGCGGAGTTCGGCCTCTTCTCGGGATC
AAAGATGCTCGAATAATGACAGGACCCCATCGGCGAGGAACATAGAGTCC
ACTGATGATATCACTCCTGCTCCTGTAGGAGCGAGTACTTCTGGAGGCGC
TGGCCCTTCAAATGTACCCTCAGCACCTTCTGATAACGGTGAACCGGTGT
TCGTGAATGGGCGGTATCGATATCGGTGTTCAGAGCCCGGTTGCCAATCC
ATTTATACGCATCCTTCAAATCTGGCCACCCATGTGAGACTCAAGCACAT
GGGCTTCACACCTGAGCATCAGTGCGACGCATGCCATTTGAAGTTTCCCT
TCTTGTCTGTTCTTCGAGTCCATCAAAGGGAAGTGCACGGCCCGAAGCAG
CATGAATGCCCTGTGTGCCATAAGAAAATGACTAGGAAACTTAGCTTGGA
TCGACACATGGCAGCGGTACATCCTGAGCAGTAA
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