Ggra9111.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9111.t1
Unique NameGgra9111.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length76
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:228943..229337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9111Ggra9111Gracilaria gracilis GNS1m malegenetig00000176_pilon 228943..229337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9111.t1Ggra9111.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 228943..229337 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9111.t1.start1Ggra9111.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 228943..228945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9111.t1.CDS1Ggra9111.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 228943..228946 +
Ggra9111.t1.CDS2Ggra9111.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 229014..229099 +
Ggra9111.t1.CDS3Ggra9111.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000176_pilon 229200..229337 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9111.t1.exon1Ggra9111.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 228943..228946 +
Ggra9111.t1.exon2Ggra9111.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 229014..229099 +
Ggra9111.t1.exon3Ggra9111.t1.exon3Gracilaria gracilis GNS1m maleexontig00000176_pilon 229200..229337 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9111.t1.intron1Ggra9111.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 228947..229013 +
Ggra9111.t1.intron2Ggra9111.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000176_pilon 229100..229199 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9111.t1.stop1Ggra9111.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 229335..229337 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9111.t1 ID=Ggra9111.t1|Name=Ggra9111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=76bp
MSSQTGFKPKSVLTQPSAQSSVPIVPKHGTETVEQLREILSSKETELENL
RKKTIEYQARLDRVAFVLKSSNNNS*
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spliced messenger RNA

>Ggra9111.t1 ID=Ggra9111.t1|Name=Ggra9111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp|location=Sequence derived from alignment at tig00000176_pilon:228943..229337+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTCAAACGGGCTTCAAACCCAAGTCTGTCTTAACGCAGCCATC
CGCTCAGAGTTCGGTACCCATAGTTCCAAAGCATGGTACAGAAACTGTTG
AACAACTGCGTGAGATCTTGAGTTCGAAGGAAACGGAGTTGGAAAACCTG
CGAAAGAAAACAATCGAGTACCAAGCTCGACTGGATAGAGTTGCGTTCGT
TCTCAAGTCAAGCAACAACAACAGCTGA
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protein sequence of Ggra9111.t1

>Ggra9111.t1 ID=Ggra9111.t1|Name=Ggra9111.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=76bp
MSSQTGFKPKSVLTQPSAQSSVPIVPKHGTETVEQLREILSSKETELENL
RKKTIEYQARLDRVAFVLKSSNNNS*
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mRNA from alignment at tig00000176_pilon:228943..229337+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9111.t1 ID=Ggra9111.t1|Name=Ggra9111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=395bp|location=Sequence derived from alignment at tig00000176_pilon:228943..229337+ (Gracilaria gracilis GNS1m male)
ATGAGTACGTTGTCCGAGTCATATAGTGCTGTCCAGAATACGATTCGTTC
TGATGCTGACATTCCTTTCAGGCTCTCAAACGGGCTTCAAACCCAAGTCT
GTCTTAACGCAGCCATCCGCTCAGAGTTCGGTACCCATAGTTCCAAAGCA
TGGTACAGTAAGTGTCAACGTTAACCTCCTGGTTTAAATAGCGACATCTT
TGTTGACATCAGTTTTTATATCATTGTCCTTTCGATTACTATTCTGAACT
TAATAAGGAAACTGTTGAACAACTGCGTGAGATCTTGAGTTCGAAGGAAA
CGGAGTTGGAAAACCTGCGAAAGAAAACAATCGAGTACCAAGCTCGACTG
GATAGAGTTGCGTTCGTTCTCAAGTCAAGCAACAACAACAGCTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:228943..229337+

>Ggra9111.t1 ID=Ggra9111.t1|Name=Ggra9111.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=228bp|location=Sequence derived from alignment at tig00000176_pilon:228943..229337+ (Gracilaria gracilis GNS1m male)
ATGAGCTCTCAAACGGGCTTCAAACCCAAGTCTGTCTTAACGCAGCCATC
CGCTCAGAGTTCGGTACCCATAGTTCCAAAGCATGGTACAGAAACTGTTG
AACAACTGCGTGAGATCTTGAGTTCGAAGGAAACGGAGTTGGAAAACCTG
CGAAAGAAAACAATCGAGTACCAAGCTCGACTGGATAGAGTTGCGTTCGT
TCTCAAGTCAAGCAACAACAACAGCTGA
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