Ggra9088.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9088.t1
Unique NameGgra9088.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:161774..163387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705658.1
Preferred nameRGP1
PFAMsRgp1
Max annot lvl2759|Eukaryota
KEGG koko:K20477
GOsGO:0000139,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006810,GO:0008150,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0010605,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019222,GO:0019899,GO:0023051,GO:0023056,GO:0031090,GO:0031267,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031984,GO:0032006,GO:0032008,GO:0032045,GO:0032268,GO:0032269,GO:0032588,GO:0032991,GO:0034066,GO:0042147,GO:0042176,GO:0042177,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:1902531,GO:1902533,GO:1903362,GO:1903363,GO:1903939,GO:1904515
Evalue1.98e-37
EggNOG OGsKOG4469@1|root,KOG4469@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
COG categoryJ
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9088Ggra9088Gracilaria gracilis GNS1m malegenetig00000176_pilon 161774..163387 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9088.t1.stop1Ggra9088.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 161774..161776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9088.t1.CDS1Ggra9088.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 161774..163387 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9088.t1.exon1Ggra9088.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 161774..163387 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9088.t1.start1Ggra9088.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 163385..163387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9088.t1Ggra9088.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 161774..163387 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9088.t1 ID=Ggra9088.t1|Name=Ggra9088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=538bp
MTVPSTITVSAHALSPSFVPGSSLQATITLHADALRRPRTEPSRSNRVDY
IVCEVSGRWSTDRSWLVSHAHTNSARHTLDNHLSKPIASSHSPRVLHVPS
QADSQPYPWSAALSDANLIGGGGRPGHSGVIFRSAPLVVCEREQLTPGSR
VCFEVECVLPEAVPPTFRGIAVRYAYALHIVVKFPDATAPKLVRVPFRIV
TPGGTAKDESRARMVVPVPTPQGVGPLSNSFLEEKETTALSMSARLLKSA
PPDDIEIALALSLNGRLTPYNEDVNKNNPLTNDHQTLSNLRELPVLPTPR
PGMDIEKKRARRRNVIPVYAITQGNHSIARLYLSKKVHHLGDTLSAIFHF
QGERPCYRLGARLEAHEVVNPEYAVGQNTQSSTDQGVVFRKIYGEHGEFV
MSCKNTSITFSIPHDAPPSFTTNVVSVRWLLHFVFLIPQSKGKHRANGAA
SHHIAGDDDIQPLLNRVHITENGVTDEVEMGWEGGPWPGEDPHNWTHLPQ
ENVDVLKWTLPIIISGESGSQWGTKSAAKLVHVADGP*
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spliced messenger RNA

>Ggra9088.t1 ID=Ggra9088.t1|Name=Ggra9088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000176_pilon:161774..163387- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTTCCGTCAACCATAACTGTATCGGCTCATGCACTATCCCCTTC
TTTCGTTCCAGGATCGTCCTTGCAAGCCACGATAACACTCCATGCAGACG
CTTTAAGACGGCCTCGAACTGAGCCTTCCCGCTCCAACCGCGTGGACTAT
ATTGTATGTGAAGTAAGCGGTCGCTGGTCCACCGACCGTTCCTGGCTCGT
ATCTCATGCTCATACCAACTCTGCGCGGCACACGTTGGACAATCATCTAT
CTAAACCGATTGCGTCCTCGCATTCACCGCGAGTCTTACATGTCCCATCA
CAAGCTGATAGCCAACCATACCCCTGGTCTGCCGCTCTGTCGGATGCCAA
TTTGATCGGCGGCGGCGGACGACCTGGTCACTCTGGAGTAATATTTCGTT
CTGCTCCGCTTGTCGTTTGCGAAAGGGAGCAACTGACTCCTGGTTCGCGT
GTGTGTTTTGAAGTCGAATGCGTGCTACCCGAAGCTGTTCCTCCGACTTT
CCGAGGTATTGCAGTCAGGTACGCATACGCACTTCATATTGTCGTCAAGT
TTCCGGATGCGACGGCTCCCAAGTTAGTTCGCGTTCCGTTCAGGATCGTT
ACGCCGGGCGGAACTGCAAAGGACGAGAGCCGTGCTAGAATGGTAGTTCC
CGTCCCCACTCCACAGGGAGTAGGTCCCTTATCCAATTCCTTTTTGGAAG
AGAAAGAAACTACCGCACTAAGCATGTCTGCAAGATTGTTGAAGAGCGCG
CCTCCGGACGACATTGAAATTGCTTTGGCTCTTTCTTTGAATGGCAGATT
GACGCCTTATAACGAAGATGTTAACAAGAACAATCCGCTTACAAATGATC
ATCAAACATTATCTAACTTGAGGGAGCTACCGGTGTTACCTACACCTCGA
CCGGGCATGGACATCGAAAAGAAGCGTGCGCGTAGACGAAACGTAATACC
GGTGTATGCTATTACCCAAGGCAACCATTCCATTGCTCGTCTTTATCTTT
CGAAAAAGGTTCACCATCTGGGTGACACATTGTCTGCAATATTCCATTTT
CAAGGAGAGCGGCCATGCTATCGTCTTGGAGCTCGTTTAGAAGCACACGA
AGTTGTTAATCCGGAGTACGCCGTGGGACAAAATACACAGTCAAGTACCG
ACCAAGGTGTCGTATTCCGAAAGATTTATGGAGAGCATGGTGAGTTCGTT
ATGTCTTGTAAGAACACATCTATAACTTTCTCGATTCCCCATGATGCCCC
ACCATCATTCACGACCAATGTTGTCTCCGTCAGATGGTTGCTTCATTTCG
TTTTTCTTATCCCACAATCTAAAGGAAAACATCGTGCAAACGGAGCTGCG
TCGCACCATATAGCTGGTGACGACGATATCCAACCGCTCCTAAATCGTGT
GCACATAACTGAAAACGGGGTTACAGACGAGGTGGAAATGGGCTGGGAAG
GTGGGCCCTGGCCTGGAGAGGACCCTCACAATTGGACGCATCTTCCGCAA
GAAAACGTTGATGTTTTGAAATGGACTCTACCGATTATTATCAGCGGCGA
GTCTGGGTCCCAGTGGGGAACCAAGAGTGCGGCGAAGCTTGTGCACGTCG
CGGACGGCCCGTAA
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protein sequence of Ggra9088.t1

>Ggra9088.t1 ID=Ggra9088.t1|Name=Ggra9088.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=538bp
MTVPSTITVSAHALSPSFVPGSSLQATITLHADALRRPRTEPSRSNRVDY
IVCEVSGRWSTDRSWLVSHAHTNSARHTLDNHLSKPIASSHSPRVLHVPS
QADSQPYPWSAALSDANLIGGGGRPGHSGVIFRSAPLVVCEREQLTPGSR
VCFEVECVLPEAVPPTFRGIAVRYAYALHIVVKFPDATAPKLVRVPFRIV
TPGGTAKDESRARMVVPVPTPQGVGPLSNSFLEEKETTALSMSARLLKSA
PPDDIEIALALSLNGRLTPYNEDVNKNNPLTNDHQTLSNLRELPVLPTPR
PGMDIEKKRARRRNVIPVYAITQGNHSIARLYLSKKVHHLGDTLSAIFHF
QGERPCYRLGARLEAHEVVNPEYAVGQNTQSSTDQGVVFRKIYGEHGEFV
MSCKNTSITFSIPHDAPPSFTTNVVSVRWLLHFVFLIPQSKGKHRANGAA
SHHIAGDDDIQPLLNRVHITENGVTDEVEMGWEGGPWPGEDPHNWTHLPQ
ENVDVLKWTLPIIISGESGSQWGTKSAAKLVHVADGP*
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mRNA from alignment at tig00000176_pilon:161774..163387-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9088.t1 ID=Ggra9088.t1|Name=Ggra9088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000176_pilon:161774..163387- (Gracilaria gracilis GNS1m male)
ATGACCGTTCCGTCAACCATAACTGTATCGGCTCATGCACTATCCCCTTC
TTTCGTTCCAGGATCGTCCTTGCAAGCCACGATAACACTCCATGCAGACG
CTTTAAGACGGCCTCGAACTGAGCCTTCCCGCTCCAACCGCGTGGACTAT
ATTGTATGTGAAGTAAGCGGTCGCTGGTCCACCGACCGTTCCTGGCTCGT
ATCTCATGCTCATACCAACTCTGCGCGGCACACGTTGGACAATCATCTAT
CTAAACCGATTGCGTCCTCGCATTCACCGCGAGTCTTACATGTCCCATCA
CAAGCTGATAGCCAACCATACCCCTGGTCTGCCGCTCTGTCGGATGCCAA
TTTGATCGGCGGCGGCGGACGACCTGGTCACTCTGGAGTAATATTTCGTT
CTGCTCCGCTTGTCGTTTGCGAAAGGGAGCAACTGACTCCTGGTTCGCGT
GTGTGTTTTGAAGTCGAATGCGTGCTACCCGAAGCTGTTCCTCCGACTTT
CCGAGGTATTGCAGTCAGGTACGCATACGCACTTCATATTGTCGTCAAGT
TTCCGGATGCGACGGCTCCCAAGTTAGTTCGCGTTCCGTTCAGGATCGTT
ACGCCGGGCGGAACTGCAAAGGACGAGAGCCGTGCTAGAATGGTAGTTCC
CGTCCCCACTCCACAGGGAGTAGGTCCCTTATCCAATTCCTTTTTGGAAG
AGAAAGAAACTACCGCACTAAGCATGTCTGCAAGATTGTTGAAGAGCGCG
CCTCCGGACGACATTGAAATTGCTTTGGCTCTTTCTTTGAATGGCAGATT
GACGCCTTATAACGAAGATGTTAACAAGAACAATCCGCTTACAAATGATC
ATCAAACATTATCTAACTTGAGGGAGCTACCGGTGTTACCTACACCTCGA
CCGGGCATGGACATCGAAAAGAAGCGTGCGCGTAGACGAAACGTAATACC
GGTGTATGCTATTACCCAAGGCAACCATTCCATTGCTCGTCTTTATCTTT
CGAAAAAGGTTCACCATCTGGGTGACACATTGTCTGCAATATTCCATTTT
CAAGGAGAGCGGCCATGCTATCGTCTTGGAGCTCGTTTAGAAGCACACGA
AGTTGTTAATCCGGAGTACGCCGTGGGACAAAATACACAGTCAAGTACCG
ACCAAGGTGTCGTATTCCGAAAGATTTATGGAGAGCATGGTGAGTTCGTT
ATGTCTTGTAAGAACACATCTATAACTTTCTCGATTCCCCATGATGCCCC
ACCATCATTCACGACCAATGTTGTCTCCGTCAGATGGTTGCTTCATTTCG
TTTTTCTTATCCCACAATCTAAAGGAAAACATCGTGCAAACGGAGCTGCG
TCGCACCATATAGCTGGTGACGACGATATCCAACCGCTCCTAAATCGTGT
GCACATAACTGAAAACGGGGTTACAGACGAGGTGGAAATGGGCTGGGAAG
GTGGGCCCTGGCCTGGAGAGGACCCTCACAATTGGACGCATCTTCCGCAA
GAAAACGTTGATGTTTTGAAATGGACTCTACCGATTATTATCAGCGGCGA
GTCTGGGTCCCAGTGGGGAACCAAGAGTGCGGCGAAGCTTGTGCACGTCG
CGGACGGCCCGTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:161774..163387-

>Ggra9088.t1 ID=Ggra9088.t1|Name=Ggra9088.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00000176_pilon:161774..163387- (Gracilaria gracilis GNS1m male)
ATGACCGTTCCGTCAACCATAACTGTATCGGCTCATGCACTATCCCCTTC
TTTCGTTCCAGGATCGTCCTTGCAAGCCACGATAACACTCCATGCAGACG
CTTTAAGACGGCCTCGAACTGAGCCTTCCCGCTCCAACCGCGTGGACTAT
ATTGTATGTGAAGTAAGCGGTCGCTGGTCCACCGACCGTTCCTGGCTCGT
ATCTCATGCTCATACCAACTCTGCGCGGCACACGTTGGACAATCATCTAT
CTAAACCGATTGCGTCCTCGCATTCACCGCGAGTCTTACATGTCCCATCA
CAAGCTGATAGCCAACCATACCCCTGGTCTGCCGCTCTGTCGGATGCCAA
TTTGATCGGCGGCGGCGGACGACCTGGTCACTCTGGAGTAATATTTCGTT
CTGCTCCGCTTGTCGTTTGCGAAAGGGAGCAACTGACTCCTGGTTCGCGT
GTGTGTTTTGAAGTCGAATGCGTGCTACCCGAAGCTGTTCCTCCGACTTT
CCGAGGTATTGCAGTCAGGTACGCATACGCACTTCATATTGTCGTCAAGT
TTCCGGATGCGACGGCTCCCAAGTTAGTTCGCGTTCCGTTCAGGATCGTT
ACGCCGGGCGGAACTGCAAAGGACGAGAGCCGTGCTAGAATGGTAGTTCC
CGTCCCCACTCCACAGGGAGTAGGTCCCTTATCCAATTCCTTTTTGGAAG
AGAAAGAAACTACCGCACTAAGCATGTCTGCAAGATTGTTGAAGAGCGCG
CCTCCGGACGACATTGAAATTGCTTTGGCTCTTTCTTTGAATGGCAGATT
GACGCCTTATAACGAAGATGTTAACAAGAACAATCCGCTTACAAATGATC
ATCAAACATTATCTAACTTGAGGGAGCTACCGGTGTTACCTACACCTCGA
CCGGGCATGGACATCGAAAAGAAGCGTGCGCGTAGACGAAACGTAATACC
GGTGTATGCTATTACCCAAGGCAACCATTCCATTGCTCGTCTTTATCTTT
CGAAAAAGGTTCACCATCTGGGTGACACATTGTCTGCAATATTCCATTTT
CAAGGAGAGCGGCCATGCTATCGTCTTGGAGCTCGTTTAGAAGCACACGA
AGTTGTTAATCCGGAGTACGCCGTGGGACAAAATACACAGTCAAGTACCG
ACCAAGGTGTCGTATTCCGAAAGATTTATGGAGAGCATGGTGAGTTCGTT
ATGTCTTGTAAGAACACATCTATAACTTTCTCGATTCCCCATGATGCCCC
ACCATCATTCACGACCAATGTTGTCTCCGTCAGATGGTTGCTTCATTTCG
TTTTTCTTATCCCACAATCTAAAGGAAAACATCGTGCAAACGGAGCTGCG
TCGCACCATATAGCTGGTGACGACGATATCCAACCGCTCCTAAATCGTGT
GCACATAACTGAAAACGGGGTTACAGACGAGGTGGAAATGGGCTGGGAAG
GTGGGCCCTGGCCTGGAGAGGACCCTCACAATTGGACGCATCTTCCGCAA
GAAAACGTTGATGTTTTGAAATGGACTCTACCGATTATTATCAGCGGCGA
GTCTGGGTCCCAGTGGGGAACCAAGAGTGCGGCGAAGCTTGTGCACGTCG
CGGACGGCCCGTAA
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