Ggra9084.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9084.t1
Unique NameGgra9084.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:152268..153461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096PA36
PFAMsTHUMP
Max annot lvl3041|Chlorophyta
KEGG koko:K06963
Evalue3.57e-22
EggNOG OGsCOG1818@1|root,KOG3943@2759|Eukaryota,37PFC@33090|Viridiplantae,34N5G@3041|Chlorophyta
DescriptionTHUMP
COG categoryS
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9084Ggra9084Gracilaria gracilis GNS1m malegenetig00000176_pilon 152268..153461 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9084.t1.stop1Ggra9084.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 152268..152270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9084.t1.CDS1Ggra9084.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 152268..153461 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9084.t1.exon1Ggra9084.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 152268..153461 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9084.t1.start1Ggra9084.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 153459..153461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9084.t1Ggra9084.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 152268..153461 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9084.t1 ID=Ggra9084.t1|Name=Ggra9084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MGSSVPQKRAAPENVPLSSRARRRKFRNAAVHTVRRADLSQAQRGVLVSC
TPGHEHHAFRDAVVLFSRFVSADQGPQSAQATDDQGTVRAVKPDNAAAGQ
GEKHEKNALENELAQLRKREGHAFTRVVADVKGAVFLRVNDQSVDVEHVV
EQALVEARESGNTGSRHCIRLIPVHATCYAKAESATTVALKVVKERFPPV
QQHGGVSFAIVFRARLNNSAKRDEFIQAIASAIHEYEPRYTVNLTKPDVV
LIVEVLKTSCCIGTFTKFYQLAKLNLREAACPSKPKDDKGEKQSAAVGQE
RDAKDSANSKQAGSPSKQASESAEKAKEACANNEPTAVAATESANTEATA
TVAAEAADAKEAVDGGDSGDDGATDVATTATEAVAADEAGDKCQAKA*
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spliced messenger RNA

>Ggra9084.t1 ID=Ggra9084.t1|Name=Ggra9084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000176_pilon:152268..153461- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCTCCGTGCCGCAGAAGAGGGCGGCGCCCGAGAACGTGCCGCT
GTCGTCGCGGGCGCGGCGTAGAAAGTTCCGCAACGCCGCGGTGCACACCG
TGCGACGCGCAGACCTCAGTCAGGCGCAGCGGGGCGTGCTGGTGAGTTGC
ACGCCCGGCCATGAGCACCACGCATTTCGGGACGCCGTTGTGCTGTTTTC
GCGCTTTGTTTCCGCGGATCAAGGCCCGCAATCTGCGCAGGCCACCGATG
ACCAAGGCACTGTTCGCGCCGTGAAACCGGATAACGCGGCGGCGGGGCAG
GGCGAGAAGCATGAAAAAAACGCGCTGGAGAATGAGTTGGCGCAGCTGCG
AAAGCGCGAAGGGCATGCATTCACGCGCGTGGTGGCTGATGTGAAGGGCG
CGGTGTTTCTACGCGTGAACGATCAAAGCGTGGATGTGGAGCACGTTGTG
GAACAGGCGCTAGTGGAAGCGAGAGAGAGCGGAAACACCGGCTCACGGCA
CTGCATTCGTCTGATCCCAGTGCACGCCACGTGCTACGCGAAGGCGGAGT
CTGCCACGACAGTAGCGTTGAAGGTTGTGAAGGAGCGCTTCCCGCCCGTG
CAGCAGCACGGGGGCGTTTCGTTTGCGATTGTGTTCCGCGCACGGTTGAA
CAACTCCGCGAAGAGGGATGAGTTTATCCAGGCGATTGCAAGCGCCATCC
ATGAGTATGAGCCGCGGTATACGGTGAACCTGACCAAGCCGGATGTGGTG
CTGATCGTGGAGGTGTTGAAGACCAGCTGCTGTATCGGCACGTTCACGAA
GTTCTATCAGCTAGCGAAGCTGAACTTGAGGGAGGCGGCGTGCCCGTCCA
AGCCGAAAGACGACAAGGGCGAGAAGCAGTCAGCAGCCGTTGGTCAAGAG
CGCGATGCGAAAGACAGCGCCAACAGCAAGCAAGCAGGCAGCCCAAGCAA
GCAGGCCAGCGAAAGCGCGGAAAAGGCAAAAGAGGCATGCGCGAACAACG
AGCCAACAGCAGTGGCGGCGACAGAATCAGCGAACACGGAAGCAACAGCA
ACAGTAGCGGCAGAAGCAGCAGACGCGAAAGAAGCGGTGGATGGAGGCGA
TAGCGGCGATGATGGCGCCACGGACGTCGCGACGACGGCGACGGAGGCTG
TAGCGGCGGATGAGGCGGGGGACAAATGCCAAGCGAAAGCATGA
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protein sequence of Ggra9084.t1

>Ggra9084.t1 ID=Ggra9084.t1|Name=Ggra9084.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MGSSVPQKRAAPENVPLSSRARRRKFRNAAVHTVRRADLSQAQRGVLVSC
TPGHEHHAFRDAVVLFSRFVSADQGPQSAQATDDQGTVRAVKPDNAAAGQ
GEKHEKNALENELAQLRKREGHAFTRVVADVKGAVFLRVNDQSVDVEHVV
EQALVEARESGNTGSRHCIRLIPVHATCYAKAESATTVALKVVKERFPPV
QQHGGVSFAIVFRARLNNSAKRDEFIQAIASAIHEYEPRYTVNLTKPDVV
LIVEVLKTSCCIGTFTKFYQLAKLNLREAACPSKPKDDKGEKQSAAVGQE
RDAKDSANSKQAGSPSKQASESAEKAKEACANNEPTAVAATESANTEATA
TVAAEAADAKEAVDGGDSGDDGATDVATTATEAVAADEAGDKCQAKA*
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mRNA from alignment at tig00000176_pilon:152268..153461-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9084.t1 ID=Ggra9084.t1|Name=Ggra9084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000176_pilon:152268..153461- (Gracilaria gracilis GNS1m male)
ATGGGCTCCTCCGTGCCGCAGAAGAGGGCGGCGCCCGAGAACGTGCCGCT
GTCGTCGCGGGCGCGGCGTAGAAAGTTCCGCAACGCCGCGGTGCACACCG
TGCGACGCGCAGACCTCAGTCAGGCGCAGCGGGGCGTGCTGGTGAGTTGC
ACGCCCGGCCATGAGCACCACGCATTTCGGGACGCCGTTGTGCTGTTTTC
GCGCTTTGTTTCCGCGGATCAAGGCCCGCAATCTGCGCAGGCCACCGATG
ACCAAGGCACTGTTCGCGCCGTGAAACCGGATAACGCGGCGGCGGGGCAG
GGCGAGAAGCATGAAAAAAACGCGCTGGAGAATGAGTTGGCGCAGCTGCG
AAAGCGCGAAGGGCATGCATTCACGCGCGTGGTGGCTGATGTGAAGGGCG
CGGTGTTTCTACGCGTGAACGATCAAAGCGTGGATGTGGAGCACGTTGTG
GAACAGGCGCTAGTGGAAGCGAGAGAGAGCGGAAACACCGGCTCACGGCA
CTGCATTCGTCTGATCCCAGTGCACGCCACGTGCTACGCGAAGGCGGAGT
CTGCCACGACAGTAGCGTTGAAGGTTGTGAAGGAGCGCTTCCCGCCCGTG
CAGCAGCACGGGGGCGTTTCGTTTGCGATTGTGTTCCGCGCACGGTTGAA
CAACTCCGCGAAGAGGGATGAGTTTATCCAGGCGATTGCAAGCGCCATCC
ATGAGTATGAGCCGCGGTATACGGTGAACCTGACCAAGCCGGATGTGGTG
CTGATCGTGGAGGTGTTGAAGACCAGCTGCTGTATCGGCACGTTCACGAA
GTTCTATCAGCTAGCGAAGCTGAACTTGAGGGAGGCGGCGTGCCCGTCCA
AGCCGAAAGACGACAAGGGCGAGAAGCAGTCAGCAGCCGTTGGTCAAGAG
CGCGATGCGAAAGACAGCGCCAACAGCAAGCAAGCAGGCAGCCCAAGCAA
GCAGGCCAGCGAAAGCGCGGAAAAGGCAAAAGAGGCATGCGCGAACAACG
AGCCAACAGCAGTGGCGGCGACAGAATCAGCGAACACGGAAGCAACAGCA
ACAGTAGCGGCAGAAGCAGCAGACGCGAAAGAAGCGGTGGATGGAGGCGA
TAGCGGCGATGATGGCGCCACGGACGTCGCGACGACGGCGACGGAGGCTG
TAGCGGCGGATGAGGCGGGGGACAAATGCCAAGCGAAAGCATGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:152268..153461-

>Ggra9084.t1 ID=Ggra9084.t1|Name=Ggra9084.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000176_pilon:152268..153461- (Gracilaria gracilis GNS1m male)
ATGGGCTCCTCCGTGCCGCAGAAGAGGGCGGCGCCCGAGAACGTGCCGCT
GTCGTCGCGGGCGCGGCGTAGAAAGTTCCGCAACGCCGCGGTGCACACCG
TGCGACGCGCAGACCTCAGTCAGGCGCAGCGGGGCGTGCTGGTGAGTTGC
ACGCCCGGCCATGAGCACCACGCATTTCGGGACGCCGTTGTGCTGTTTTC
GCGCTTTGTTTCCGCGGATCAAGGCCCGCAATCTGCGCAGGCCACCGATG
ACCAAGGCACTGTTCGCGCCGTGAAACCGGATAACGCGGCGGCGGGGCAG
GGCGAGAAGCATGAAAAAAACGCGCTGGAGAATGAGTTGGCGCAGCTGCG
AAAGCGCGAAGGGCATGCATTCACGCGCGTGGTGGCTGATGTGAAGGGCG
CGGTGTTTCTACGCGTGAACGATCAAAGCGTGGATGTGGAGCACGTTGTG
GAACAGGCGCTAGTGGAAGCGAGAGAGAGCGGAAACACCGGCTCACGGCA
CTGCATTCGTCTGATCCCAGTGCACGCCACGTGCTACGCGAAGGCGGAGT
CTGCCACGACAGTAGCGTTGAAGGTTGTGAAGGAGCGCTTCCCGCCCGTG
CAGCAGCACGGGGGCGTTTCGTTTGCGATTGTGTTCCGCGCACGGTTGAA
CAACTCCGCGAAGAGGGATGAGTTTATCCAGGCGATTGCAAGCGCCATCC
ATGAGTATGAGCCGCGGTATACGGTGAACCTGACCAAGCCGGATGTGGTG
CTGATCGTGGAGGTGTTGAAGACCAGCTGCTGTATCGGCACGTTCACGAA
GTTCTATCAGCTAGCGAAGCTGAACTTGAGGGAGGCGGCGTGCCCGTCCA
AGCCGAAAGACGACAAGGGCGAGAAGCAGTCAGCAGCCGTTGGTCAAGAG
CGCGATGCGAAAGACAGCGCCAACAGCAAGCAAGCAGGCAGCCCAAGCAA
GCAGGCCAGCGAAAGCGCGGAAAAGGCAAAAGAGGCATGCGCGAACAACG
AGCCAACAGCAGTGGCGGCGACAGAATCAGCGAACACGGAAGCAACAGCA
ACAGTAGCGGCAGAAGCAGCAGACGCGAAAGAAGCGGTGGATGGAGGCGA
TAGCGGCGATGATGGCGCCACGGACGTCGCGACGACGGCGACGGAGGCTG
TAGCGGCGGATGAGGCGGGGGACAAATGCCAAGCGAAAGCATGA
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