Ggra9099.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9099.t1
Unique Name	Ggra9099.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:184679..186298 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010254140.1
PFAMs	Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08287
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046777,GO:0071704,GO:0140096,GO:1901564
Evalue	1.06e-127
EggNOG OGs	KOG0667@1\|root,KOG0671@2759\|Eukaryota,37JQS@33090\|Viridiplantae,3G8ZF@35493\|Streptophyta
EC	2.7.12.1
Description	serine threonine-protein kinase
COG category	T
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9099	Ggra9099	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 184679..186298 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9099.t1.start1	Ggra9099.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 184679..184681 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9099.t1.CDS1	Ggra9099.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 184679..186298 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9099.t1.exon1	Ggra9099.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 184679..186298 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9099.t1.stop1	Ggra9099.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 186296..186298 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9099.t1	Ggra9099.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 184679..186298 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:184679..186298+
coding sequence from alignment at tig00000176_pilon:184679..186298+

mRNA sequence

>Ggra9099.t1 ID=Ggra9099.t1|Name=Ggra9099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp
MSRPASQSVGANAVRRARTHSLCADAADAADAQPVAYALRARKRARVAPP
PPPPPPPPHPPPAAPLLPPAANAARVPAARLLFYKRHELLPLHPVPPPVA
RTPSQTPLSLPPPPQPLPPRKLLPPYCLPNKDDADGHLIYKLGDGLLPSA
KFPNGRYKILSDLGEGTFGKVVECWDRSRCQRVAVKIIRNVTKYRQAARL
EIDVLLHIKRHDPRQLYHCVKFFTCFDYQSHVCVVFEKLGPSLYEQLRRN
RFRPFPLHQLRAFAFQLLQSVHFVHNLTLIHTDLKPENILLADPKRPNDI
KLIDFGSATFESQHHSAVISTRHYRAPEVILGLGWTYPCDLWSIGCILVE
LYTGRALFQTHENLEHLAMMMTVLGPIPDSMIRRADCSGQKYFTRLKSGR
KALNWPQGASSRESVRSVSKVQALHKIIRDPDAHATFFDLVRRLLDFEPR
TRCTSAEALQHPFFQDDVLCVPQHASSSAASTQPHRSSASSTVKRKRRSV
KRKPTQNVSAITSNASSSSSVGAANPLVLYQNEDGRRSS*

spliced messenger RNA

>Ggra9099.t1 ID=Ggra9099.t1|Name=Ggra9099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000176_pilon:184679..186298+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGTCCCGCCTCGCAGTCCGTGGGCGCCAACGCCGTGCGGCGCGC
GCGCACGCACTCGCTCTGCGCCGACGCCGCCGACGCCGCCGACGCGCAGC
CCGTCGCGTACGCGCTGCGCGCGCGCAAGAGGGCGCGCGTGGcgccgccg
ccgccgccgccgccgccgccACCACACCCGCCGCCTGCAGCTCCGCTGCT
GCCCCCCGCCGCCAATGCCGCGCGCGTCCCCGCCGCCAGACTCCTCTTCT
ACAAGCGACACGAGCTGCTcccgctgcatcccgtcccgccacccgtcgcc
cgcaccccgtcgcagacgccgctctcgctgccgcccccgccgcagccgct
cccgccGCGAAAGCTGTTGCCGCCCTACTGCCTGCCGAACAAGGATGACG
CCGACGGCCATCTTATCTACAAGCTTGGCGATGGGCTGTTGCCTAGCGCC
AAGTTTCCCAACGGCCGCTACAAGATTCTTAGCGATCTGGGCGAGGGTAC
CTTTGGCAAGGTCGTCGAGTGCTGGGATCGTAGCCGCTGCCAGCGCGTCG
CCGTTAAAATCATCCGAAACGTAACAAAGTACCGCCAAGCCGCCCGCCTC
GAGATCGACGTGCTGCTGCACATCAAGAGGCATGACCCCCGCCAGCTTTA
CCACTGCGTCAAGTTCTTCACCTGCTTCGACTACCAGTCGCATGTGTGCG
TCGTCTTCGAAAAGCTCGGGCCCTCCTTGTACGAACAGCTGCGCCGAAAT
CGTTTCCGCCCGTTTCCGCTGCACCAGCTGCGCGCCTTTGCCTTTCAGTT
GCTGCAAAGCGTTCATTTCGTGCACAACCTCACGCTTATACACACCGATC
TCAAGCCCGAGAATATCCTCCTCGCCGACCCCAAACGCCCGAACGACATC
AAGCTCATCGATTTTGGAAGCGCCACTTTTGAGTCGCAGCACCACTCTGC
CGTCATTTCCACAAGACATTACCGCGCCCCCGAGGTCATTCTGGGTTTGG
GTTGGACCTATCCATGCGACCTCTGGAGCATCGGCTGTATTCTCGTGGAG
CTCTACACAGGCCGAGCTCTTTTCCAAACTCATGAAAACCTCGAACACCT
CGCCATGATGATGACCGTCCTGGGGCCTATTCCAGATTCCATGATTAGGC
GCGCAGACTGCTCTGGACAAAAGTACTTTACGCGCTTGAAGAGCGGCCGG
AAGGCGCTCAACTGGCCACAAGGCGCTTCTTCCAGGGAATCTGTTCGTTC
TGTTAGCAAAGTACAAGCGCTACACAAGATCATCCGCGACCCGGATGCAC
ATGCCACCTTTTTTGACCTCGTACGTCGCCTGCTGGACTTTGAGCCGAGA
ACTCGCTGTACATCGGCTGAAGCACTGCAACACCCTTTTTTTCAGGACGA
TGTACTGTGCGTGCCGCAACACGCTTCTTCAAGTGCCGCTTCAACTCAAC
CGCACCGTTCTTCTGCCTCTTCAACTGTGAAGCGGAAGCGAAGATCTGTG
AAGAGAAAACCTACGCAGAATGTGAGCGCCATAACATCCAACGCATCTTC
GTCCAGTTCGGTGGGCGCAGCCAACCCGCTTGTGCTTTATCAGAACGAAG
ATGGACGACGGAGCTCGTAA

protein sequence of Ggra9099.t1

>Ggra9099.t1 ID=Ggra9099.t1|Name=Ggra9099.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=540bp
MSRPASQSVGANAVRRARTHSLCADAADAADAQPVAYALRARKRARVAPP
PPPPPPPPHPPPAAPLLPPAANAARVPAARLLFYKRHELLPLHPVPPPVA
RTPSQTPLSLPPPPQPLPPRKLLPPYCLPNKDDADGHLIYKLGDGLLPSA
KFPNGRYKILSDLGEGTFGKVVECWDRSRCQRVAVKIIRNVTKYRQAARL
EIDVLLHIKRHDPRQLYHCVKFFTCFDYQSHVCVVFEKLGPSLYEQLRRN
RFRPFPLHQLRAFAFQLLQSVHFVHNLTLIHTDLKPENILLADPKRPNDI
KLIDFGSATFESQHHSAVISTRHYRAPEVILGLGWTYPCDLWSIGCILVE
LYTGRALFQTHENLEHLAMMMTVLGPIPDSMIRRADCSGQKYFTRLKSGR
KALNWPQGASSRESVRSVSKVQALHKIIRDPDAHATFFDLVRRLLDFEPR
TRCTSAEALQHPFFQDDVLCVPQHASSSAASTQPHRSSASSTVKRKRRSV
KRKPTQNVSAITSNASSSSSVGAANPLVLYQNEDGRRSS*

mRNA from alignment at tig00000176_pilon:184679..186298+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9099.t1 ID=Ggra9099.t1|Name=Ggra9099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000176_pilon:184679..186298+ (Gracilaria gracilis GNS1m male)
ATGTCTCGTCCCGCCTCGCAGTCCGTGGGCGCCAACGCCGTGCGGCGCGC
GCGCACGCACTCGCTCTGCGCCGACGCCGCCGACGCCGCCGACGCGCAGC
CCGTCGCGTACGCGCTGCGCGCGCGCAAGAGGGCGCGCGTGGcgccgccg
ccgccgccgccgccgccgccACCACACCCGCCGCCTGCAGCTCCGCTGCT
GCCCCCCGCCGCCAATGCCGCGCGCGTCCCCGCCGCCAGACTCCTCTTCT
ACAAGCGACACGAGCTGCTcccgctgcatcccgtcccgccacccgtcgcc
cgcaccccgtcgcagacgccgctctcgctgccgcccccgccgcagccgct
cccgccGCGAAAGCTGTTGCCGCCCTACTGCCTGCCGAACAAGGATGACG
CCGACGGCCATCTTATCTACAAGCTTGGCGATGGGCTGTTGCCTAGCGCC
AAGTTTCCCAACGGCCGCTACAAGATTCTTAGCGATCTGGGCGAGGGTAC
CTTTGGCAAGGTCGTCGAGTGCTGGGATCGTAGCCGCTGCCAGCGCGTCG
CCGTTAAAATCATCCGAAACGTAACAAAGTACCGCCAAGCCGCCCGCCTC
GAGATCGACGTGCTGCTGCACATCAAGAGGCATGACCCCCGCCAGCTTTA
CCACTGCGTCAAGTTCTTCACCTGCTTCGACTACCAGTCGCATGTGTGCG
TCGTCTTCGAAAAGCTCGGGCCCTCCTTGTACGAACAGCTGCGCCGAAAT
CGTTTCCGCCCGTTTCCGCTGCACCAGCTGCGCGCCTTTGCCTTTCAGTT
GCTGCAAAGCGTTCATTTCGTGCACAACCTCACGCTTATACACACCGATC
TCAAGCCCGAGAATATCCTCCTCGCCGACCCCAAACGCCCGAACGACATC
AAGCTCATCGATTTTGGAAGCGCCACTTTTGAGTCGCAGCACCACTCTGC
CGTCATTTCCACAAGACATTACCGCGCCCCCGAGGTCATTCTGGGTTTGG
GTTGGACCTATCCATGCGACCTCTGGAGCATCGGCTGTATTCTCGTGGAG
CTCTACACAGGCCGAGCTCTTTTCCAAACTCATGAAAACCTCGAACACCT
CGCCATGATGATGACCGTCCTGGGGCCTATTCCAGATTCCATGATTAGGC
GCGCAGACTGCTCTGGACAAAAGTACTTTACGCGCTTGAAGAGCGGCCGG
AAGGCGCTCAACTGGCCACAAGGCGCTTCTTCCAGGGAATCTGTTCGTTC
TGTTAGCAAAGTACAAGCGCTACACAAGATCATCCGCGACCCGGATGCAC
ATGCCACCTTTTTTGACCTCGTACGTCGCCTGCTGGACTTTGAGCCGAGA
ACTCGCTGTACATCGGCTGAAGCACTGCAACACCCTTTTTTTCAGGACGA
TGTACTGTGCGTGCCGCAACACGCTTCTTCAAGTGCCGCTTCAACTCAAC
CGCACCGTTCTTCTGCCTCTTCAACTGTGAAGCGGAAGCGAAGATCTGTG
AAGAGAAAACCTACGCAGAATGTGAGCGCCATAACATCCAACGCATCTTC
GTCCAGTTCGGTGGGCGCAGCCAACCCGCTTGTGCTTTATCAGAACGAAG
ATGGACGACGGAGCTCGTAA

Coding sequence (CDS) from alignment at tig00000176_pilon:184679..186298+

>Ggra9099.t1 ID=Ggra9099.t1|Name=Ggra9099.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00000176_pilon:184679..186298+ (Gracilaria gracilis GNS1m male)
ATGTCTCGTCCCGCCTCGCAGTCCGTGGGCGCCAACGCCGTGCGGCGCGC
GCGCACGCACTCGCTCTGCGCCGACGCCGCCGACGCCGCCGACGCGCAGC
CCGTCGCGTACGCGCTGCGCGCGCGCAAGAGGGCGCGCGTGGcgccgccg
ccgccgccgccgccgccgccACCACACCCGCCGCCTGCAGCTCCGCTGCT
GCCCCCCGCCGCCAATGCCGCGCGCGTCCCCGCCGCCAGACTCCTCTTCT
ACAAGCGACACGAGCTGCTcccgctgcatcccgtcccgccacccgtcgcc
cgcaccccgtcgcagacgccgctctcgctgccgcccccgccgcagccgct
cccgccGCGAAAGCTGTTGCCGCCCTACTGCCTGCCGAACAAGGATGACG
CCGACGGCCATCTTATCTACAAGCTTGGCGATGGGCTGTTGCCTAGCGCC
AAGTTTCCCAACGGCCGCTACAAGATTCTTAGCGATCTGGGCGAGGGTAC
CTTTGGCAAGGTCGTCGAGTGCTGGGATCGTAGCCGCTGCCAGCGCGTCG
CCGTTAAAATCATCCGAAACGTAACAAAGTACCGCCAAGCCGCCCGCCTC
GAGATCGACGTGCTGCTGCACATCAAGAGGCATGACCCCCGCCAGCTTTA
CCACTGCGTCAAGTTCTTCACCTGCTTCGACTACCAGTCGCATGTGTGCG
TCGTCTTCGAAAAGCTCGGGCCCTCCTTGTACGAACAGCTGCGCCGAAAT
CGTTTCCGCCCGTTTCCGCTGCACCAGCTGCGCGCCTTTGCCTTTCAGTT
GCTGCAAAGCGTTCATTTCGTGCACAACCTCACGCTTATACACACCGATC
TCAAGCCCGAGAATATCCTCCTCGCCGACCCCAAACGCCCGAACGACATC
AAGCTCATCGATTTTGGAAGCGCCACTTTTGAGTCGCAGCACCACTCTGC
CGTCATTTCCACAAGACATTACCGCGCCCCCGAGGTCATTCTGGGTTTGG
GTTGGACCTATCCATGCGACCTCTGGAGCATCGGCTGTATTCTCGTGGAG
CTCTACACAGGCCGAGCTCTTTTCCAAACTCATGAAAACCTCGAACACCT
CGCCATGATGATGACCGTCCTGGGGCCTATTCCAGATTCCATGATTAGGC
GCGCAGACTGCTCTGGACAAAAGTACTTTACGCGCTTGAAGAGCGGCCGG
AAGGCGCTCAACTGGCCACAAGGCGCTTCTTCCAGGGAATCTGTTCGTTC
TGTTAGCAAAGTACAAGCGCTACACAAGATCATCCGCGACCCGGATGCAC
ATGCCACCTTTTTTGACCTCGTACGTCGCCTGCTGGACTTTGAGCCGAGA
ACTCGCTGTACATCGGCTGAAGCACTGCAACACCCTTTTTTTCAGGACGA
TGTACTGTGCGTGCCGCAACACGCTTCTTCAAGTGCCGCTTCAACTCAAC
CGCACCGTTCTTCTGCCTCTTCAACTGTGAAGCGGAAGCGAAGATCTGTG
AAGAGAAAACCTACGCAGAATGTGAGCGCCATAACATCCAACGCATCTTC
GTCCAGTTCGGTGGGCGCAGCCAACCCGCTTGTGCTTTATCAGAACGAAG
ATGGACGACGGAGCTCGTAA