Ggra5351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5351.t1
Unique NameGgra5351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:242458..243387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog251221.35210952
PFAMsS4
Max annot lvl1117|Cyanobacteria
Evalue9.23e-43
EggNOG OGsCOG2302@1|root,COG2302@2|Bacteria,1G1VF@1117|Cyanobacteria
Descriptionphotosystem II S4 domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5351Ggra5351Gracilaria gracilis GNS1m malegenetig00000172_pilon 242458..243387 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5351.t1.start1Ggra5351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 242458..242460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5351.t1.CDS1Ggra5351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 242458..243387 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5351.t1.exon1Ggra5351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 242458..243387 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5351.t1.stop1Ggra5351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 243385..243387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5351.t1Ggra5351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 242458..243387 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5351.t1 ID=Ggra5351.t1|Name=Ggra5351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MQRAFAPPRPATALFRRPRPILRTTCAPARRALTPTLSLTSAQTQKLLSF
AEANKVDRALAQNMIALSERAVREHTILTSHFLTPLESCCVLDMVRAMRD
ARAACWGGYDDAERRLLVVGGAYDVSDDDELIGVANEALVVVKLEGKFDD
KVSHRDFMGAVLSSGLDRAQIGDISVLDDRRGAQVIATRDAARIMESGVQ
SVRQTTVSVRTECMLELEETQRAFKEVDSVESSLRLDAVGSSGLNMSRTK
FSKLLDKGLVSHNHRVVRNGSKAVNVQDTISARGVGKLRVSDVSRTKRGR
YRVSMVRYL*
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spliced messenger RNA

>Ggra5351.t1 ID=Ggra5351.t1|Name=Ggra5351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000172_pilon:242458..243387+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCGCCTTCGCGCCGCCACGCCCAGCCACGGCACTTTTCAGACG
GCCGCGCCCCATCCTCCGCACAACATGCGCACCGGCACGCCGTGCGCTCA
CCCCAACGCTCTCGCTCACGTCGGCACAGACGCAGAAGCTGCTGAGCTTC
GCGGAGGCGAACAAGGTAGACAGGGCGCTGGCGCAAAACATGATCGCGTT
GAGCGAGCGCGCAGTGAGGGAACACACCATCCTGACGTCGCACTTCCTCA
CGCCGCTGGAGAGCTGCTGCGTGCTGGACATGGTGCGCGCCATGCGCGAC
GCGCGCGCCGCGTGCTGGGGCGGGTACGACGACGCGGAGCGACGGTTGCT
GGTGGTGGGCGGCGCGTACGACGTGAGCGACGACGACGAGCTGATCGGCG
TGGCGAATGAGGCGTTGGTAGTAGTGAAACTGGAGGGCAAGTTCGACGAT
AAGGTGAGTCATCGCGACTTTATGGGCGCCGTGTTGTCGAGCGGGTTGGA
TCGCGCGCAGATCGGAGACATTAGCGTGCTGGACGATCGGCGCGGCGCGC
AGGTGATCGCCACGCGCGACGCGGCTCGGATAATGGAAAGCGGCGTGCAG
AGCGTGCGTCAAACGACGGTGAGCGTGCGCACAGAGTGCATGTTGGAGCT
GGAAGAGACTCAACGTGCGTTCAAGGAAGTGGACAGCGTGGAGTCATCGT
TACGGCTTGACGCGGTGGGTAGCAGCGGGCTGAACATGAGTCGCACCAAG
TTCAGCAAGCTGCTGGACAAGGGGCTGGTGTCGCACAACCACCGCGTGGT
GCGCAACGGCAGTAAGGCGGTGAACGTGCAGGATACCATCTCGGCGAGAG
GAGTGGGCAAGCTGCGCGTGAGCGACGTGAGCCGCACCAAACGCGGGCGG
TACCGCGTGAGCATGGTGCGCTATTTGTGA
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protein sequence of Ggra5351.t1

>Ggra5351.t1 ID=Ggra5351.t1|Name=Ggra5351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MQRAFAPPRPATALFRRPRPILRTTCAPARRALTPTLSLTSAQTQKLLSF
AEANKVDRALAQNMIALSERAVREHTILTSHFLTPLESCCVLDMVRAMRD
ARAACWGGYDDAERRLLVVGGAYDVSDDDELIGVANEALVVVKLEGKFDD
KVSHRDFMGAVLSSGLDRAQIGDISVLDDRRGAQVIATRDAARIMESGVQ
SVRQTTVSVRTECMLELEETQRAFKEVDSVESSLRLDAVGSSGLNMSRTK
FSKLLDKGLVSHNHRVVRNGSKAVNVQDTISARGVGKLRVSDVSRTKRGR
YRVSMVRYL*
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mRNA from alignment at tig00000172_pilon:242458..243387+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5351.t1 ID=Ggra5351.t1|Name=Ggra5351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000172_pilon:242458..243387+ (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCCTTCGCGCCGCCACGCCCAGCCACGGCACTTTTCAGACG
GCCGCGCCCCATCCTCCGCACAACATGCGCACCGGCACGCCGTGCGCTCA
CCCCAACGCTCTCGCTCACGTCGGCACAGACGCAGAAGCTGCTGAGCTTC
GCGGAGGCGAACAAGGTAGACAGGGCGCTGGCGCAAAACATGATCGCGTT
GAGCGAGCGCGCAGTGAGGGAACACACCATCCTGACGTCGCACTTCCTCA
CGCCGCTGGAGAGCTGCTGCGTGCTGGACATGGTGCGCGCCATGCGCGAC
GCGCGCGCCGCGTGCTGGGGCGGGTACGACGACGCGGAGCGACGGTTGCT
GGTGGTGGGCGGCGCGTACGACGTGAGCGACGACGACGAGCTGATCGGCG
TGGCGAATGAGGCGTTGGTAGTAGTGAAACTGGAGGGCAAGTTCGACGAT
AAGGTGAGTCATCGCGACTTTATGGGCGCCGTGTTGTCGAGCGGGTTGGA
TCGCGCGCAGATCGGAGACATTAGCGTGCTGGACGATCGGCGCGGCGCGC
AGGTGATCGCCACGCGCGACGCGGCTCGGATAATGGAAAGCGGCGTGCAG
AGCGTGCGTCAAACGACGGTGAGCGTGCGCACAGAGTGCATGTTGGAGCT
GGAAGAGACTCAACGTGCGTTCAAGGAAGTGGACAGCGTGGAGTCATCGT
TACGGCTTGACGCGGTGGGTAGCAGCGGGCTGAACATGAGTCGCACCAAG
TTCAGCAAGCTGCTGGACAAGGGGCTGGTGTCGCACAACCACCGCGTGGT
GCGCAACGGCAGTAAGGCGGTGAACGTGCAGGATACCATCTCGGCGAGAG
GAGTGGGCAAGCTGCGCGTGAGCGACGTGAGCCGCACCAAACGCGGGCGG
TACCGCGTGAGCATGGTGCGCTATTTGTGA
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Coding sequence (CDS) from alignment at tig00000172_pilon:242458..243387+

>Ggra5351.t1 ID=Ggra5351.t1|Name=Ggra5351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000172_pilon:242458..243387+ (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCCTTCGCGCCGCCACGCCCAGCCACGGCACTTTTCAGACG
GCCGCGCCCCATCCTCCGCACAACATGCGCACCGGCACGCCGTGCGCTCA
CCCCAACGCTCTCGCTCACGTCGGCACAGACGCAGAAGCTGCTGAGCTTC
GCGGAGGCGAACAAGGTAGACAGGGCGCTGGCGCAAAACATGATCGCGTT
GAGCGAGCGCGCAGTGAGGGAACACACCATCCTGACGTCGCACTTCCTCA
CGCCGCTGGAGAGCTGCTGCGTGCTGGACATGGTGCGCGCCATGCGCGAC
GCGCGCGCCGCGTGCTGGGGCGGGTACGACGACGCGGAGCGACGGTTGCT
GGTGGTGGGCGGCGCGTACGACGTGAGCGACGACGACGAGCTGATCGGCG
TGGCGAATGAGGCGTTGGTAGTAGTGAAACTGGAGGGCAAGTTCGACGAT
AAGGTGAGTCATCGCGACTTTATGGGCGCCGTGTTGTCGAGCGGGTTGGA
TCGCGCGCAGATCGGAGACATTAGCGTGCTGGACGATCGGCGCGGCGCGC
AGGTGATCGCCACGCGCGACGCGGCTCGGATAATGGAAAGCGGCGTGCAG
AGCGTGCGTCAAACGACGGTGAGCGTGCGCACAGAGTGCATGTTGGAGCT
GGAAGAGACTCAACGTGCGTTCAAGGAAGTGGACAGCGTGGAGTCATCGT
TACGGCTTGACGCGGTGGGTAGCAGCGGGCTGAACATGAGTCGCACCAAG
TTCAGCAAGCTGCTGGACAAGGGGCTGGTGTCGCACAACCACCGCGTGGT
GCGCAACGGCAGTAAGGCGGTGAACGTGCAGGATACCATCTCGGCGAGAG
GAGTGGGCAAGCTGCGCGTGAGCGACGTGAGCCGCACCAAACGCGGGCGG
TACCGCGTGAGCATGGTGCGCTATTTGTGA
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