Ggra5349.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5349.t1
Unique NameGgra5349.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length570
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:235929..237638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog56107.Cylst_1711
PFAMsAmino_oxidase,NAD_binding_8
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01835,RC01960
KEGG koko:K09516,ko:K09835
KEGG ReactionR07163,R07512
KEGG Pathwayko00830,ko00906,ko01100,ko01110,map00830,map00906,map01100,map01110
KEGG ModuleM00097
Evalue5.69e-151
EggNOG OGsCOG1233@1|root,COG1233@2|Bacteria,1G0AY@1117|Cyanobacteria,1HM2C@1161|Nostocales
EC1.3.99.23,5.2.1.13
DescriptionPFAM Flavin containing amine oxidoreductase
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5349Ggra5349Gracilaria gracilis GNS1m malegenetig00000172_pilon 235929..237638 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5349.t1.stop1Ggra5349.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 235929..235931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5349.t1.CDS1Ggra5349.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 235929..237638 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5349.t1.exon1Ggra5349.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 235929..237638 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5349.t1.start1Ggra5349.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 237636..237638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5349.t1Ggra5349.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 235929..237638 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5349.t1 ID=Ggra5349.t1|Name=Ggra5349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp
MPHPSSASFIAPAPLRAAHNPLRSSKRLLTFRNVTRYHVPRMRDSSIHHD
STHDIIIIGTGFGALSAASILTAYGFKPLLLESHYAPGGVAHGFSVRNGA
GNFHFDTGPSFFCDLDSRLSSNPLKQALDAVGEHVKCVSYPSFCIDDLRV
GTVTVSSDEEDVLKHVHRLGGGDAASQLRSFNRVMRKIHSAMNVPAVALR
GDWKVMPVISRRWAPDMLALLPYVNDVTRPVGDIMRRIGVTHPFVKRILD
TEAFLLSGLKTDSTITAEIAFMIGERSKRNAMQYPIGGVRSIVRAFVKGI
KRKGGTVRLNSHVERILVEDGVAVGVDLRSGERIFAKHIFSNASLWDTVK
HLLPKNALPSAYRRSALQTPMVESFMHAHMAIPSEGLKGIVGHHAVIIDS
QKDIAVPGNTVMISIPTVWSPDLAPEGWHIIHCYTLEGYDKWPSLQSNPK
LYQIAKKEAAQPLFKAVRHVIPDLDERLKHEHAIVKIGSPLTHERFNRRY
RGTYGAAIVAGKAEFEWPGDIPIKNLKRCGDSVFPGIGVPSSAAAGIIAA
NELVGIREHIELIDKIVPR*
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spliced messenger RNA

>Ggra5349.t1 ID=Ggra5349.t1|Name=Ggra5349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00000172_pilon:235929..237638- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACATCCAAGCTCTGCGTCGTTCATCGCCCCAGCGCCTTTGAGGGC
TGCTCACAACCCCTTGCGAAGCTCCAAACGTCTGCTTACCTTCCGCAATG
TCACTCGGTATCATGTTCCGCGCATGCGGGATTCCTCTATTCACCATGAC
AGTACGCACGATATCATCATAATAGGTACCGGCTTCGGCGCGCTTTCGGC
CGCTTCTATTCTCACAGCATACGGCTTCAAGCCGCTTTTGCTCGAGTCAC
ATTATGCACCTGGCGGCGTTGCGCACGGCTTTTCGGTGAGAAATGGCGCA
GGCAACTTTCATTTTGACACTGGCCCTTCTTTCTTCTGCGACTTGGATTC
GAGATTGTCGTCCAATCCTTTGAAACAGGCGCTTGATGCCGTAGGAGAGC
ATGTGAAATGTGTCTCGTACCCCAGCTTTTGTATTGATGATCTTCGTGTC
GGAACAGTCACGGTTTCAAGCGATGAGGAGGACGTTCTGAAACATGTTCA
CCGACTTGGTGGTGGTGATGCTGCATCTCAGTTGCGTTCGTTTAATCGCG
TGATGCGAAAAATTCATAGTGCTATGAATGTGCCTGCCGTTGCGCTGCGC
GGAGATTGGAAAGTTATGCCCGTGATTTCCAGAAGATGGGCGCCTGATAT
GCTGGCTCTTCTTCCGTACGTGAATGATGTTACGAGACCGGTCGGTGACA
TCATGCGACGCATTGGAGTTACCCATCCGTTTGTAAAACGTATCTTGGAT
ACAGAAGCTTTTCTCTTGTCGGGTCTTAAAACTGATTCTACCATCACTGC
TGAGATTGCGTTCATGATTGGAGAAAGATCGAAGCGAAACGCTATGCAAT
ATCCGATTGGAGGTGTCCGCTCAATTGTTCGCGCGTTTGTGAAAGGCATT
AAGCGAAAAGGCGGTACCGTACGCTTGAACAGTCACGTGGAACGTATTCT
GGTGGAAGATGGGGTGGCCGTGGGTGTCGATCTTCGCTCTGGTGAACGAA
TCTTTGCGAAGCACATTTTCTCTAATGCGTCTTTGTGGGATACTGTGAAA
CATCTTCTACCCAAGAATGCTCTTCCATCTGCGTATAGAAGAAGTGCCTT
ACAGACACCAATGGTGGAATCGTTTATGCATGCACATATGGCTATACCCT
CTGAGGGACTGAAAGGTATTGTCGGACATCACGCAGTTATCATAGATTCG
CAAAAGGATATAGCCGTGCCTGGAAACACCGTGATGATTAGCATACCTAC
CGTGTGGAGCCCCGATCTTGCTCCAGAAGGCTGGCACATAATTCATTGCT
ACACCCTAGAAGGGTACGACAAATGGCCCAGCTTGCAAAGCAATCCCAAG
CTTTACCAAATCGCCAAGAAAGAAGCTGCGCAGCCTTTGTTCAAAGCTGT
GCGACACGTGATCCCAGATCTAGATGAACGTCTCAAACATGAGCATGCAA
TTGTCAAGATTGGAAGCCCGCTCACACATGAGCGTTTCAATAGACGGTAC
AGAGGTACCTATGGGGCCGCCATTGTGGCAGGAAAAGCTGAGTTTGAGTG
GCCGGGGGATATTCCTATCAAGAACTTGAAGAGATGTGGTGATTCTGTGT
TTCCTGGTATTGGTGTGCCGAGTAGTGCGGCCGCGGGCATCATCGCTGCG
AATGAGCTTGTTGGTATTCGAGAGCATATTGAACTTATCGACAAGATCGT
TCCACGTTGA
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protein sequence of Ggra5349.t1

>Ggra5349.t1 ID=Ggra5349.t1|Name=Ggra5349.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=570bp
MPHPSSASFIAPAPLRAAHNPLRSSKRLLTFRNVTRYHVPRMRDSSIHHD
STHDIIIIGTGFGALSAASILTAYGFKPLLLESHYAPGGVAHGFSVRNGA
GNFHFDTGPSFFCDLDSRLSSNPLKQALDAVGEHVKCVSYPSFCIDDLRV
GTVTVSSDEEDVLKHVHRLGGGDAASQLRSFNRVMRKIHSAMNVPAVALR
GDWKVMPVISRRWAPDMLALLPYVNDVTRPVGDIMRRIGVTHPFVKRILD
TEAFLLSGLKTDSTITAEIAFMIGERSKRNAMQYPIGGVRSIVRAFVKGI
KRKGGTVRLNSHVERILVEDGVAVGVDLRSGERIFAKHIFSNASLWDTVK
HLLPKNALPSAYRRSALQTPMVESFMHAHMAIPSEGLKGIVGHHAVIIDS
QKDIAVPGNTVMISIPTVWSPDLAPEGWHIIHCYTLEGYDKWPSLQSNPK
LYQIAKKEAAQPLFKAVRHVIPDLDERLKHEHAIVKIGSPLTHERFNRRY
RGTYGAAIVAGKAEFEWPGDIPIKNLKRCGDSVFPGIGVPSSAAAGIIAA
NELVGIREHIELIDKIVPR*
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mRNA from alignment at tig00000172_pilon:235929..237638-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5349.t1 ID=Ggra5349.t1|Name=Ggra5349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00000172_pilon:235929..237638- (Gracilaria gracilis GNS1m male)
ATGCCACATCCAAGCTCTGCGTCGTTCATCGCCCCAGCGCCTTTGAGGGC
TGCTCACAACCCCTTGCGAAGCTCCAAACGTCTGCTTACCTTCCGCAATG
TCACTCGGTATCATGTTCCGCGCATGCGGGATTCCTCTATTCACCATGAC
AGTACGCACGATATCATCATAATAGGTACCGGCTTCGGCGCGCTTTCGGC
CGCTTCTATTCTCACAGCATACGGCTTCAAGCCGCTTTTGCTCGAGTCAC
ATTATGCACCTGGCGGCGTTGCGCACGGCTTTTCGGTGAGAAATGGCGCA
GGCAACTTTCATTTTGACACTGGCCCTTCTTTCTTCTGCGACTTGGATTC
GAGATTGTCGTCCAATCCTTTGAAACAGGCGCTTGATGCCGTAGGAGAGC
ATGTGAAATGTGTCTCGTACCCCAGCTTTTGTATTGATGATCTTCGTGTC
GGAACAGTCACGGTTTCAAGCGATGAGGAGGACGTTCTGAAACATGTTCA
CCGACTTGGTGGTGGTGATGCTGCATCTCAGTTGCGTTCGTTTAATCGCG
TGATGCGAAAAATTCATAGTGCTATGAATGTGCCTGCCGTTGCGCTGCGC
GGAGATTGGAAAGTTATGCCCGTGATTTCCAGAAGATGGGCGCCTGATAT
GCTGGCTCTTCTTCCGTACGTGAATGATGTTACGAGACCGGTCGGTGACA
TCATGCGACGCATTGGAGTTACCCATCCGTTTGTAAAACGTATCTTGGAT
ACAGAAGCTTTTCTCTTGTCGGGTCTTAAAACTGATTCTACCATCACTGC
TGAGATTGCGTTCATGATTGGAGAAAGATCGAAGCGAAACGCTATGCAAT
ATCCGATTGGAGGTGTCCGCTCAATTGTTCGCGCGTTTGTGAAAGGCATT
AAGCGAAAAGGCGGTACCGTACGCTTGAACAGTCACGTGGAACGTATTCT
GGTGGAAGATGGGGTGGCCGTGGGTGTCGATCTTCGCTCTGGTGAACGAA
TCTTTGCGAAGCACATTTTCTCTAATGCGTCTTTGTGGGATACTGTGAAA
CATCTTCTACCCAAGAATGCTCTTCCATCTGCGTATAGAAGAAGTGCCTT
ACAGACACCAATGGTGGAATCGTTTATGCATGCACATATGGCTATACCCT
CTGAGGGACTGAAAGGTATTGTCGGACATCACGCAGTTATCATAGATTCG
CAAAAGGATATAGCCGTGCCTGGAAACACCGTGATGATTAGCATACCTAC
CGTGTGGAGCCCCGATCTTGCTCCAGAAGGCTGGCACATAATTCATTGCT
ACACCCTAGAAGGGTACGACAAATGGCCCAGCTTGCAAAGCAATCCCAAG
CTTTACCAAATCGCCAAGAAAGAAGCTGCGCAGCCTTTGTTCAAAGCTGT
GCGACACGTGATCCCAGATCTAGATGAACGTCTCAAACATGAGCATGCAA
TTGTCAAGATTGGAAGCCCGCTCACACATGAGCGTTTCAATAGACGGTAC
AGAGGTACCTATGGGGCCGCCATTGTGGCAGGAAAAGCTGAGTTTGAGTG
GCCGGGGGATATTCCTATCAAGAACTTGAAGAGATGTGGTGATTCTGTGT
TTCCTGGTATTGGTGTGCCGAGTAGTGCGGCCGCGGGCATCATCGCTGCG
AATGAGCTTGTTGGTATTCGAGAGCATATTGAACTTATCGACAAGATCGT
TCCACGTTGA
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Coding sequence (CDS) from alignment at tig00000172_pilon:235929..237638-

>Ggra5349.t1 ID=Ggra5349.t1|Name=Ggra5349.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1710bp|location=Sequence derived from alignment at tig00000172_pilon:235929..237638- (Gracilaria gracilis GNS1m male)
ATGCCACATCCAAGCTCTGCGTCGTTCATCGCCCCAGCGCCTTTGAGGGC
TGCTCACAACCCCTTGCGAAGCTCCAAACGTCTGCTTACCTTCCGCAATG
TCACTCGGTATCATGTTCCGCGCATGCGGGATTCCTCTATTCACCATGAC
AGTACGCACGATATCATCATAATAGGTACCGGCTTCGGCGCGCTTTCGGC
CGCTTCTATTCTCACAGCATACGGCTTCAAGCCGCTTTTGCTCGAGTCAC
ATTATGCACCTGGCGGCGTTGCGCACGGCTTTTCGGTGAGAAATGGCGCA
GGCAACTTTCATTTTGACACTGGCCCTTCTTTCTTCTGCGACTTGGATTC
GAGATTGTCGTCCAATCCTTTGAAACAGGCGCTTGATGCCGTAGGAGAGC
ATGTGAAATGTGTCTCGTACCCCAGCTTTTGTATTGATGATCTTCGTGTC
GGAACAGTCACGGTTTCAAGCGATGAGGAGGACGTTCTGAAACATGTTCA
CCGACTTGGTGGTGGTGATGCTGCATCTCAGTTGCGTTCGTTTAATCGCG
TGATGCGAAAAATTCATAGTGCTATGAATGTGCCTGCCGTTGCGCTGCGC
GGAGATTGGAAAGTTATGCCCGTGATTTCCAGAAGATGGGCGCCTGATAT
GCTGGCTCTTCTTCCGTACGTGAATGATGTTACGAGACCGGTCGGTGACA
TCATGCGACGCATTGGAGTTACCCATCCGTTTGTAAAACGTATCTTGGAT
ACAGAAGCTTTTCTCTTGTCGGGTCTTAAAACTGATTCTACCATCACTGC
TGAGATTGCGTTCATGATTGGAGAAAGATCGAAGCGAAACGCTATGCAAT
ATCCGATTGGAGGTGTCCGCTCAATTGTTCGCGCGTTTGTGAAAGGCATT
AAGCGAAAAGGCGGTACCGTACGCTTGAACAGTCACGTGGAACGTATTCT
GGTGGAAGATGGGGTGGCCGTGGGTGTCGATCTTCGCTCTGGTGAACGAA
TCTTTGCGAAGCACATTTTCTCTAATGCGTCTTTGTGGGATACTGTGAAA
CATCTTCTACCCAAGAATGCTCTTCCATCTGCGTATAGAAGAAGTGCCTT
ACAGACACCAATGGTGGAATCGTTTATGCATGCACATATGGCTATACCCT
CTGAGGGACTGAAAGGTATTGTCGGACATCACGCAGTTATCATAGATTCG
CAAAAGGATATAGCCGTGCCTGGAAACACCGTGATGATTAGCATACCTAC
CGTGTGGAGCCCCGATCTTGCTCCAGAAGGCTGGCACATAATTCATTGCT
ACACCCTAGAAGGGTACGACAAATGGCCCAGCTTGCAAAGCAATCCCAAG
CTTTACCAAATCGCCAAGAAAGAAGCTGCGCAGCCTTTGTTCAAAGCTGT
GCGACACGTGATCCCAGATCTAGATGAACGTCTCAAACATGAGCATGCAA
TTGTCAAGATTGGAAGCCCGCTCACACATGAGCGTTTCAATAGACGGTAC
AGAGGTACCTATGGGGCCGCCATTGTGGCAGGAAAAGCTGAGTTTGAGTG
GCCGGGGGATATTCCTATCAAGAACTTGAAGAGATGTGGTGATTCTGTGT
TTCCTGGTATTGGTGTGCCGAGTAGTGCGGCCGCGGGCATCATCGCTGCG
AATGAGCTTGTTGGTATTCGAGAGCATATTGAACTTATCGACAAGATCGT
TCCACGTTGA
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