Ggra9844.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9844.t1
Unique Name	Ggra9844.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	753

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:54574..56832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD17134
PFAMs	Ank_2
Max annot lvl	2759\|Eukaryota
Evalue	8.77e-34
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Description	spectrin binding
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9844	Ggra9844	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 54574..56832 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9844.t1.start1	Ggra9844.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 54574..54576 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9844.t1.CDS1	Ggra9844.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 54574..56832 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9844.t1.exon1	Ggra9844.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 54574..56832 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9844.t1.stop1	Ggra9844.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 56830..56832 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9844.t1	Ggra9844.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 54574..56832 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:54574..56832+
coding sequence from alignment at tig00000170_pilon:54574..56832+

mRNA sequence

>Ggra9844.t1 ID=Ggra9844.t1|Name=Ggra9844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp
MPLHVLLIQGMSIVNSDWYADQLLASSSYLRRPTCIVTRVSYDYGENIEA
VQQAMRKHDYNAIIVCDLSEAQDTFSTGIGPVIQRYVRSGGRVAFPTTEG
LNLIPVLKELFDVPWTRSSYGREDWIANPQSAALLSAQFPLGNRAQAVNL
RFCVKGCSYTNVPQSDRCFEAQPYDDEDDSDEDCGAHAARQESPVLVAIR
SYGDGFVSYFGDVNCEPPTAQLIGAFVTVPRKRPPCSWDTERNVRRATQA
RENGNKAFREGQFQHALSFYSAAQKHLEPVANRCKEECSKVLGNIAECRL
KLNQWPDAIEASTKALELDPSNFKAHYRRTRAYLMAARGDVDVLKKHGDV
HASAVSHIHDLAVKLSKHTRPESEMQEEMNGSSSVTRDIGLLSKTSSELR
EIGNEKFKAKMYDFAMSYYEAALMVGPSNDSDHVKILCNLSLCHIRKEDW
DLAAKAANDALEINPNAEKALLRRAKAYIRKGNLKDAKADLKRLESLPDG
SGKEFRSLSEELRNAMGNADEQESDSESAGPLYATTGTISGPPFAANMSP
PFTMNMQRVSGVPAAVDRPPNSWSNGLERSKRYEWLVDCYRMRIDDEYSY
MGDVRSGSIYDPDHSADSIMVDFLIFCKLAVAKGALPSEWDWREFLNTAV
NHLQYAFEKSDAREKYGNENYFHGLLFENGRSLRFTAKKIYGTDIQIPDD
CDEQYDDMLDMVMSRIFEDCEYVDFQGSRSLLADVGSTRVWRDFLHQLQA
RV*

spliced messenger RNA

>Ggra9844.t1 ID=Ggra9844.t1|Name=Ggra9844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00000170_pilon:54574..56832+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTCCATGTTCTGCTTATCCAGGGAATGTCCATCGTGAACAGCGA
CTGGTATGCTGACCAACTTCTCGCATCTTCCTCGTATCTACGCCGTCCAA
CATGCATCGTCACACGCGTGAGCTATGACTATGGTGAGAATATCGAAGCT
GTTCAGCAAGCCATGCGCAAGCATGACTACAACGCGATAATCGTTTGTGA
TTTAAGTGAGGCACAAGACACTTTCTCTACCGGTATTGGTCCTGTGATCC
AACGCTATGTGCGGTCTGGTGGACGTGTTGCCTTTCCCACCACAGAAGGG
CTCAACCTCATTCCTGTCCTCAAGGAACTCTTCGATGTTCCCTGGACACG
CTCCTCGTATGGGAGAGAGGACTGGATTGCGAATCCACAATCAGCTGCTC
TTCTGTCGGCACAATTTCCACTGGGAAACAGGGCACAGGCTGTGAATCTA
CGCTTTTGCGTCAAGGGATGTTCGTACACCAATGTCCCACAGTCTGATCG
CTGTTTTGAAGCCCAGCCGTACGATGATGAAGATGATAGTGACGAAGACT
GTGGAGCACATGCTGCTCGTCAGGAATCTCCCGTACTAGTAGCAATTCGT
AGTTATGGTGATGGTTTCGTCTCCTATTTCGGTGATGTCAACTGTGAGCC
TCCAACTGCGCAGCTCATTGGAGCTTTTGTCACCGTGCCTCGAAAACGTC
CGCCATGTTCTTGGGATACGGAGAGGAATGTGAGACGTGCTACACAGGCC
AGGGAAAACGGAAACAAAGCATTTAGAGAAGGCCAGTTTCAGCACGCATT
GTCCTTCTACAGTGCTGCACAGAAGCATCTCGAACCCGTAGCTAATCGTT
GTAAGGAAGAGTGCTCCAAGGTTCTTGGAAATATTGCCGAATGTCGACTA
AAACTGAATCAATGGCCAGATGCCATTGAAGCATCGACCAAAGCCCTTGA
GCTTGACCCTTCCAATTTCAAAGCTCATTATCGACGGACAAGGGCGTATT
TGATGGCGGCTCGTGGCGATGTCGATGTGCTGAAGAAACATGGGGACGTT
CATGCATCGGCGGTCTCTCACATTCACGACCTTGCCGTGAAACTAAGTAA
ACATACCCGGCCCGAATCTGAGATGCAGGAAGAGATGAATGGTTCTTCTT
CCGTGACACGGGATATTGGGCTTCTTAGCAAGACTTCGAGTGAGTTAAGG
GAGATTGGTAATGAAAAATTCAAAGCCAAAATGTATGACTTTGCTATGAG
CTACTACGAAGCCGCGTTGATGGTTGGTCCCTCCAATGACAGTGACCATG
TGAAGATTCTCTGTAATCTTTCCTTGTGCCACATTCGGAAGGAAGATTGG
GATCTTGCTGCGAAGGCTGCCAATGATGCATTGGAAATCAATCCAAACGC
GGAGAAAGCACTACTGCGAAGAGCCAAGGCATATATTCGCAAGGGCAATC
TCAAAGATGCCAAAGCGGACTTAAAAAGACTTGAGTCTCTTCCAGACGGT
TCAGGCAAGGAATTCCGGTCGCTTTCAGAAGAGCTAAGGAACGCGATGGG
TAATGCGGACGAACAAGAGTCGGATTCAGAGTCCGCAGGCCCCCTTTATG
CCACTACAGGTACCATTTCTGGTCCACCATTTGCTGCGAATATGAGTCCG
CCATTTACTATGAATATGCAGCGCGTCAGTGGGGTGCCAGCTGCAGTAGA
TCGCCCGCCAAATTCTTGGAGCAATGGACTTGAGCGGAGCAAAAGGTATG
AGTGGTTAGTAGACTGCTACCGAATGCGTATAGATGATGAATATAGCTAT
ATGGGTGACGTGCGAAGTGGATCTATTTATGACCCGGATCATTCGGCCGA
TAGTATCATGGTGGACTTCTTGATATTCTGCAAATTGGCGGTGGCAAAAG
GCGCGCTACCTAGTGAATGGGACTGGAGGGAGTTTCTGAACACGGCTGTT
AATCATCTTCAATACGCTTTTGAGAAATCGGATGCTCGGGAGAAGTACGG
AAACGAGAACTACTTCCATGGACTCCTGTTCGAAAATGGACGCAGCCTTC
GTTTCACAGCGAAGAAAATATATGGTACCGACATTCAGATCCCAGATGAC
TGCGATGAGCAGTACGACGACATGTTGGATATGGTGATGTCGCGGATTTT
CGAAGACTGTGAATATGTGGACTTTCAGGGATCAAGGTCACTTCTCGCAG
ATGTAGGGAGCACAAGAGTATGGAGAGACTTTTTGCATCAGCTGCAGGCT
CGCGTGTAA

protein sequence of Ggra9844.t1

>Ggra9844.t1 ID=Ggra9844.t1|Name=Ggra9844.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=753bp
MPLHVLLIQGMSIVNSDWYADQLLASSSYLRRPTCIVTRVSYDYGENIEA
VQQAMRKHDYNAIIVCDLSEAQDTFSTGIGPVIQRYVRSGGRVAFPTTEG
LNLIPVLKELFDVPWTRSSYGREDWIANPQSAALLSAQFPLGNRAQAVNL
RFCVKGCSYTNVPQSDRCFEAQPYDDEDDSDEDCGAHAARQESPVLVAIR
SYGDGFVSYFGDVNCEPPTAQLIGAFVTVPRKRPPCSWDTERNVRRATQA
RENGNKAFREGQFQHALSFYSAAQKHLEPVANRCKEECSKVLGNIAECRL
KLNQWPDAIEASTKALELDPSNFKAHYRRTRAYLMAARGDVDVLKKHGDV
HASAVSHIHDLAVKLSKHTRPESEMQEEMNGSSSVTRDIGLLSKTSSELR
EIGNEKFKAKMYDFAMSYYEAALMVGPSNDSDHVKILCNLSLCHIRKEDW
DLAAKAANDALEINPNAEKALLRRAKAYIRKGNLKDAKADLKRLESLPDG
SGKEFRSLSEELRNAMGNADEQESDSESAGPLYATTGTISGPPFAANMSP
PFTMNMQRVSGVPAAVDRPPNSWSNGLERSKRYEWLVDCYRMRIDDEYSY
MGDVRSGSIYDPDHSADSIMVDFLIFCKLAVAKGALPSEWDWREFLNTAV
NHLQYAFEKSDAREKYGNENYFHGLLFENGRSLRFTAKKIYGTDIQIPDD
CDEQYDDMLDMVMSRIFEDCEYVDFQGSRSLLADVGSTRVWRDFLHQLQA
RV*

mRNA from alignment at tig00000170_pilon:54574..56832+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9844.t1 ID=Ggra9844.t1|Name=Ggra9844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00000170_pilon:54574..56832+ (Gracilaria gracilis GNS1m male)
ATGCCCCTCCATGTTCTGCTTATCCAGGGAATGTCCATCGTGAACAGCGA
CTGGTATGCTGACCAACTTCTCGCATCTTCCTCGTATCTACGCCGTCCAA
CATGCATCGTCACACGCGTGAGCTATGACTATGGTGAGAATATCGAAGCT
GTTCAGCAAGCCATGCGCAAGCATGACTACAACGCGATAATCGTTTGTGA
TTTAAGTGAGGCACAAGACACTTTCTCTACCGGTATTGGTCCTGTGATCC
AACGCTATGTGCGGTCTGGTGGACGTGTTGCCTTTCCCACCACAGAAGGG
CTCAACCTCATTCCTGTCCTCAAGGAACTCTTCGATGTTCCCTGGACACG
CTCCTCGTATGGGAGAGAGGACTGGATTGCGAATCCACAATCAGCTGCTC
TTCTGTCGGCACAATTTCCACTGGGAAACAGGGCACAGGCTGTGAATCTA
CGCTTTTGCGTCAAGGGATGTTCGTACACCAATGTCCCACAGTCTGATCG
CTGTTTTGAAGCCCAGCCGTACGATGATGAAGATGATAGTGACGAAGACT
GTGGAGCACATGCTGCTCGTCAGGAATCTCCCGTACTAGTAGCAATTCGT
AGTTATGGTGATGGTTTCGTCTCCTATTTCGGTGATGTCAACTGTGAGCC
TCCAACTGCGCAGCTCATTGGAGCTTTTGTCACCGTGCCTCGAAAACGTC
CGCCATGTTCTTGGGATACGGAGAGGAATGTGAGACGTGCTACACAGGCC
AGGGAAAACGGAAACAAAGCATTTAGAGAAGGCCAGTTTCAGCACGCATT
GTCCTTCTACAGTGCTGCACAGAAGCATCTCGAACCCGTAGCTAATCGTT
GTAAGGAAGAGTGCTCCAAGGTTCTTGGAAATATTGCCGAATGTCGACTA
AAACTGAATCAATGGCCAGATGCCATTGAAGCATCGACCAAAGCCCTTGA
GCTTGACCCTTCCAATTTCAAAGCTCATTATCGACGGACAAGGGCGTATT
TGATGGCGGCTCGTGGCGATGTCGATGTGCTGAAGAAACATGGGGACGTT
CATGCATCGGCGGTCTCTCACATTCACGACCTTGCCGTGAAACTAAGTAA
ACATACCCGGCCCGAATCTGAGATGCAGGAAGAGATGAATGGTTCTTCTT
CCGTGACACGGGATATTGGGCTTCTTAGCAAGACTTCGAGTGAGTTAAGG
GAGATTGGTAATGAAAAATTCAAAGCCAAAATGTATGACTTTGCTATGAG
CTACTACGAAGCCGCGTTGATGGTTGGTCCCTCCAATGACAGTGACCATG
TGAAGATTCTCTGTAATCTTTCCTTGTGCCACATTCGGAAGGAAGATTGG
GATCTTGCTGCGAAGGCTGCCAATGATGCATTGGAAATCAATCCAAACGC
GGAGAAAGCACTACTGCGAAGAGCCAAGGCATATATTCGCAAGGGCAATC
TCAAAGATGCCAAAGCGGACTTAAAAAGACTTGAGTCTCTTCCAGACGGT
TCAGGCAAGGAATTCCGGTCGCTTTCAGAAGAGCTAAGGAACGCGATGGG
TAATGCGGACGAACAAGAGTCGGATTCAGAGTCCGCAGGCCCCCTTTATG
CCACTACAGGTACCATTTCTGGTCCACCATTTGCTGCGAATATGAGTCCG
CCATTTACTATGAATATGCAGCGCGTCAGTGGGGTGCCAGCTGCAGTAGA
TCGCCCGCCAAATTCTTGGAGCAATGGACTTGAGCGGAGCAAAAGGTATG
AGTGGTTAGTAGACTGCTACCGAATGCGTATAGATGATGAATATAGCTAT
ATGGGTGACGTGCGAAGTGGATCTATTTATGACCCGGATCATTCGGCCGA
TAGTATCATGGTGGACTTCTTGATATTCTGCAAATTGGCGGTGGCAAAAG
GCGCGCTACCTAGTGAATGGGACTGGAGGGAGTTTCTGAACACGGCTGTT
AATCATCTTCAATACGCTTTTGAGAAATCGGATGCTCGGGAGAAGTACGG
AAACGAGAACTACTTCCATGGACTCCTGTTCGAAAATGGACGCAGCCTTC
GTTTCACAGCGAAGAAAATATATGGTACCGACATTCAGATCCCAGATGAC
TGCGATGAGCAGTACGACGACATGTTGGATATGGTGATGTCGCGGATTTT
CGAAGACTGTGAATATGTGGACTTTCAGGGATCAAGGTCACTTCTCGCAG
ATGTAGGGAGCACAAGAGTATGGAGAGACTTTTTGCATCAGCTGCAGGCT
CGCGTGTAA

Coding sequence (CDS) from alignment at tig00000170_pilon:54574..56832+

>Ggra9844.t1 ID=Ggra9844.t1|Name=Ggra9844.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2259bp|location=Sequence derived from alignment at tig00000170_pilon:54574..56832+ (Gracilaria gracilis GNS1m male)
ATGCCCCTCCATGTTCTGCTTATCCAGGGAATGTCCATCGTGAACAGCGA
CTGGTATGCTGACCAACTTCTCGCATCTTCCTCGTATCTACGCCGTCCAA
CATGCATCGTCACACGCGTGAGCTATGACTATGGTGAGAATATCGAAGCT
GTTCAGCAAGCCATGCGCAAGCATGACTACAACGCGATAATCGTTTGTGA
TTTAAGTGAGGCACAAGACACTTTCTCTACCGGTATTGGTCCTGTGATCC
AACGCTATGTGCGGTCTGGTGGACGTGTTGCCTTTCCCACCACAGAAGGG
CTCAACCTCATTCCTGTCCTCAAGGAACTCTTCGATGTTCCCTGGACACG
CTCCTCGTATGGGAGAGAGGACTGGATTGCGAATCCACAATCAGCTGCTC
TTCTGTCGGCACAATTTCCACTGGGAAACAGGGCACAGGCTGTGAATCTA
CGCTTTTGCGTCAAGGGATGTTCGTACACCAATGTCCCACAGTCTGATCG
CTGTTTTGAAGCCCAGCCGTACGATGATGAAGATGATAGTGACGAAGACT
GTGGAGCACATGCTGCTCGTCAGGAATCTCCCGTACTAGTAGCAATTCGT
AGTTATGGTGATGGTTTCGTCTCCTATTTCGGTGATGTCAACTGTGAGCC
TCCAACTGCGCAGCTCATTGGAGCTTTTGTCACCGTGCCTCGAAAACGTC
CGCCATGTTCTTGGGATACGGAGAGGAATGTGAGACGTGCTACACAGGCC
AGGGAAAACGGAAACAAAGCATTTAGAGAAGGCCAGTTTCAGCACGCATT
GTCCTTCTACAGTGCTGCACAGAAGCATCTCGAACCCGTAGCTAATCGTT
GTAAGGAAGAGTGCTCCAAGGTTCTTGGAAATATTGCCGAATGTCGACTA
AAACTGAATCAATGGCCAGATGCCATTGAAGCATCGACCAAAGCCCTTGA
GCTTGACCCTTCCAATTTCAAAGCTCATTATCGACGGACAAGGGCGTATT
TGATGGCGGCTCGTGGCGATGTCGATGTGCTGAAGAAACATGGGGACGTT
CATGCATCGGCGGTCTCTCACATTCACGACCTTGCCGTGAAACTAAGTAA
ACATACCCGGCCCGAATCTGAGATGCAGGAAGAGATGAATGGTTCTTCTT
CCGTGACACGGGATATTGGGCTTCTTAGCAAGACTTCGAGTGAGTTAAGG
GAGATTGGTAATGAAAAATTCAAAGCCAAAATGTATGACTTTGCTATGAG
CTACTACGAAGCCGCGTTGATGGTTGGTCCCTCCAATGACAGTGACCATG
TGAAGATTCTCTGTAATCTTTCCTTGTGCCACATTCGGAAGGAAGATTGG
GATCTTGCTGCGAAGGCTGCCAATGATGCATTGGAAATCAATCCAAACGC
GGAGAAAGCACTACTGCGAAGAGCCAAGGCATATATTCGCAAGGGCAATC
TCAAAGATGCCAAAGCGGACTTAAAAAGACTTGAGTCTCTTCCAGACGGT
TCAGGCAAGGAATTCCGGTCGCTTTCAGAAGAGCTAAGGAACGCGATGGG
TAATGCGGACGAACAAGAGTCGGATTCAGAGTCCGCAGGCCCCCTTTATG
CCACTACAGGTACCATTTCTGGTCCACCATTTGCTGCGAATATGAGTCCG
CCATTTACTATGAATATGCAGCGCGTCAGTGGGGTGCCAGCTGCAGTAGA
TCGCCCGCCAAATTCTTGGAGCAATGGACTTGAGCGGAGCAAAAGGTATG
AGTGGTTAGTAGACTGCTACCGAATGCGTATAGATGATGAATATAGCTAT
ATGGGTGACGTGCGAAGTGGATCTATTTATGACCCGGATCATTCGGCCGA
TAGTATCATGGTGGACTTCTTGATATTCTGCAAATTGGCGGTGGCAAAAG
GCGCGCTACCTAGTGAATGGGACTGGAGGGAGTTTCTGAACACGGCTGTT
AATCATCTTCAATACGCTTTTGAGAAATCGGATGCTCGGGAGAAGTACGG
AAACGAGAACTACTTCCATGGACTCCTGTTCGAAAATGGACGCAGCCTTC
GTTTCACAGCGAAGAAAATATATGGTACCGACATTCAGATCCCAGATGAC
TGCGATGAGCAGTACGACGACATGTTGGATATGGTGATGTCGCGGATTTT
CGAAGACTGTGAATATGTGGACTTTCAGGGATCAAGGTCACTTCTCGCAG
ATGTAGGGAGCACAAGAGTATGGAGAGACTTTTTGCATCAGCTGCAGGCT
CGCGTGTAA