Ggra6209.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6209.t1
Unique NameGgra6209.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000167_piloncontigtig00000167_pilon:49555..50994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_55360
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K05869
KEGG Pathwayko04020,ko04024,ko04211,ko04371,ko04380,ko04720,ko04722,ko04725,ko04921,ko04925,ko05031,ko05034,map04020,map04024,map04211,map04371,map04380,map04720,map04722,map04725,map04921,map04925,map05031,map05034
Evalue2.18e-68
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6209Ggra6209Gracilaria gracilis GNS1m malegenetig00000167_pilon 49555..50994 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6209.t1.stop1Ggra6209.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000167_pilon 49555..49557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6209.t1.CDS1Ggra6209.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000167_pilon 49555..50994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6209.t1.exon1Ggra6209.t1.exon1Gracilaria gracilis GNS1m maleexontig00000167_pilon 49555..50994 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6209.t1.start1Ggra6209.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000167_pilon 50992..50994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6209.t1Ggra6209.t1Gracilaria gracilis GNS1m malepolypeptidetig00000167_pilon 49555..50994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6209.t1 ID=Ggra6209.t1|Name=Ggra6209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp
MSLNLPAEQSSSFPQYPLILDAYQVGRQLGRGCFEKVFKAIRKRDSKSVA
IKVLEKKRLDDETSDLLHNELRILQAVSEHPGIVTLLDSHETDTHMFFIM
EYVAGGPLLDRIVSRGSLSENDARILLRSLLLTLRFLSELGCVHRDIKPE
NILVDNHSKKWPKNLTDFGLSEKMQPDQLLTDAIGTPLFVAPEILNGNGY
DCACDMWSLGVVMYIVLCGYPPFPIYDDPQKLTNAIVNGDYSFPVGEWNR
VSVDAKTVVSAMLQVDPEKRLTPAQALAHPWIRMSQSTTDLPNSKLKSFN
ARRKLKAGVMAVRTTFGLRNILGPEGLRSRPINQETLIRDVERSRALIAR
VTKSSSDSSDRAKDKAYLSRLIPENQALLSCRRSLILPVSMSAKVQVNNG
ASDYPGSRQDHGGTLQSTNLLLSESDALQSKALAMAAEAKESSNHEGINP
FMSTDSELSNDSDRNPLNLELLDFGSLGI*
back to top

spliced messenger RNA

>Ggra6209.t1 ID=Ggra6209.t1|Name=Ggra6209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000167_pilon:49555..50994- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTCAACCTTCCTGCGGAACAATCCTCATCCTTTCCACAATACCC
GCTCATTCTTGACGCGTATCAAGTTGGACGTCAATTGGGCCGTGGCTGTT
TCGAAAAGGTGTTCAAAGCCATTCGCAAACGTGACAGTAAATCTGTGGCA
ATCAAAGTACTTGAGAAGAAGCGACTGGATGATGAAACATCCGATTTACT
TCACAACGAGCTCCGTATTCTTCAGGCGGTATCAGAACATCCTGGCATTG
TAACACTACTTGACAGTCATGAGACAGACACTCACATGTTTTTCATCATG
GAGTACGTCGCTGGCGGTCCCTTGCTGGACAGAATCGTATCCAGGGGTTC
ACTTAGTGAGAATGACGCACGTATTCTGTTGAGGAGTCTTCTTCTTACCC
TGCGTTTCCTGAGTGAGCTTGGCTGCGTACATCGCGATATAAAGCCTGAA
AACATTCTGGTCGACAATCACAGCAAGAAGTGGCCCAAAAATTTGACGGA
CTTCGGTCTGTCAGAAAAGATGCAACCGGATCAACTTTTGACAGACGCAA
TAGGAACGCCTCTTTTCGTGGCTCCGGAAATTTTGAACGGCAATGGCTAT
GACTGTGCATGTGATATGTGGAGCCTTGGAGTGGTAATGTACATTGTGCT
TTGCGGTTATCCGCCCTTTCCAATATACGACGACCCACAGAAGTTAACCA
ACGCAATTGTGAACGGTGACTATTCTTTTCCTGTCGGAGAGTGGAACCGC
GTATCAGTTGATGCGAAGACAGTTGTGAGCGCAATGTTGCAAGTTGATCC
CGAAAAGCGTCTCACTCCGGCGCAGGCACTCGCGCATCCGTGGATCCGAA
TGTCTCAGTCCACAACCGATCTGCCTAATAGCAAACTCAAGTCTTTCAAT
GCTAGACGGAAACTGAAGGCTGGAGTCATGGCAGTGCGCACCACTTTCGG
GCTGCGTAATATTCTAGGACCAGAAGGACTGCGTTCTAGGCCTATCAATC
AAGAAACCCTGATAAGAGATGTAGAGAGAAGTCGGGCCTTGATAGCTCGT
GTAACCAAGTCAAGCAGCGATTCCTCCGATCGAGCAAAGGACAAAGCATA
TCTGTCAAGGTTAATCCCAGAGAACCAGGCACTATTATCGTGCAGGCGTT
CCCTCATCTTGCCCGTAAGCATGTCCGCCAAAGTTCAAGTAAACAACGGT
GCAAGCGACTACCCAGGAAGCCGACAGGACCATGGCGGGACGTTGCAGTC
CACCAACCTGTTGCTCAGCGAATCAGACGCACTGCAATCAAAAGCTTTGG
CAATGGCTGCCGAAGCCAAGGAAAGTTCAAATCACGAAGGTATCAATCCT
TTCATGAGCACAGACAGTGAGTTGAGCAATGATTCCGACAGGAACCCGTT
AAATCTTGAATTACTTGATTTCGGGAGTCTGGGAATCTGA
back to top

protein sequence of Ggra6209.t1

>Ggra6209.t1 ID=Ggra6209.t1|Name=Ggra6209.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=480bp
MSLNLPAEQSSSFPQYPLILDAYQVGRQLGRGCFEKVFKAIRKRDSKSVA
IKVLEKKRLDDETSDLLHNELRILQAVSEHPGIVTLLDSHETDTHMFFIM
EYVAGGPLLDRIVSRGSLSENDARILLRSLLLTLRFLSELGCVHRDIKPE
NILVDNHSKKWPKNLTDFGLSEKMQPDQLLTDAIGTPLFVAPEILNGNGY
DCACDMWSLGVVMYIVLCGYPPFPIYDDPQKLTNAIVNGDYSFPVGEWNR
VSVDAKTVVSAMLQVDPEKRLTPAQALAHPWIRMSQSTTDLPNSKLKSFN
ARRKLKAGVMAVRTTFGLRNILGPEGLRSRPINQETLIRDVERSRALIAR
VTKSSSDSSDRAKDKAYLSRLIPENQALLSCRRSLILPVSMSAKVQVNNG
ASDYPGSRQDHGGTLQSTNLLLSESDALQSKALAMAAEAKESSNHEGINP
FMSTDSELSNDSDRNPLNLELLDFGSLGI*
back to top

mRNA from alignment at tig00000167_pilon:49555..50994-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6209.t1 ID=Ggra6209.t1|Name=Ggra6209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000167_pilon:49555..50994- (Gracilaria gracilis GNS1m male)
ATGAGCCTCAACCTTCCTGCGGAACAATCCTCATCCTTTCCACAATACCC
GCTCATTCTTGACGCGTATCAAGTTGGACGTCAATTGGGCCGTGGCTGTT
TCGAAAAGGTGTTCAAAGCCATTCGCAAACGTGACAGTAAATCTGTGGCA
ATCAAAGTACTTGAGAAGAAGCGACTGGATGATGAAACATCCGATTTACT
TCACAACGAGCTCCGTATTCTTCAGGCGGTATCAGAACATCCTGGCATTG
TAACACTACTTGACAGTCATGAGACAGACACTCACATGTTTTTCATCATG
GAGTACGTCGCTGGCGGTCCCTTGCTGGACAGAATCGTATCCAGGGGTTC
ACTTAGTGAGAATGACGCACGTATTCTGTTGAGGAGTCTTCTTCTTACCC
TGCGTTTCCTGAGTGAGCTTGGCTGCGTACATCGCGATATAAAGCCTGAA
AACATTCTGGTCGACAATCACAGCAAGAAGTGGCCCAAAAATTTGACGGA
CTTCGGTCTGTCAGAAAAGATGCAACCGGATCAACTTTTGACAGACGCAA
TAGGAACGCCTCTTTTCGTGGCTCCGGAAATTTTGAACGGCAATGGCTAT
GACTGTGCATGTGATATGTGGAGCCTTGGAGTGGTAATGTACATTGTGCT
TTGCGGTTATCCGCCCTTTCCAATATACGACGACCCACAGAAGTTAACCA
ACGCAATTGTGAACGGTGACTATTCTTTTCCTGTCGGAGAGTGGAACCGC
GTATCAGTTGATGCGAAGACAGTTGTGAGCGCAATGTTGCAAGTTGATCC
CGAAAAGCGTCTCACTCCGGCGCAGGCACTCGCGCATCCGTGGATCCGAA
TGTCTCAGTCCACAACCGATCTGCCTAATAGCAAACTCAAGTCTTTCAAT
GCTAGACGGAAACTGAAGGCTGGAGTCATGGCAGTGCGCACCACTTTCGG
GCTGCGTAATATTCTAGGACCAGAAGGACTGCGTTCTAGGCCTATCAATC
AAGAAACCCTGATAAGAGATGTAGAGAGAAGTCGGGCCTTGATAGCTCGT
GTAACCAAGTCAAGCAGCGATTCCTCCGATCGAGCAAAGGACAAAGCATA
TCTGTCAAGGTTAATCCCAGAGAACCAGGCACTATTATCGTGCAGGCGTT
CCCTCATCTTGCCCGTAAGCATGTCCGCCAAAGTTCAAGTAAACAACGGT
GCAAGCGACTACCCAGGAAGCCGACAGGACCATGGCGGGACGTTGCAGTC
CACCAACCTGTTGCTCAGCGAATCAGACGCACTGCAATCAAAAGCTTTGG
CAATGGCTGCCGAAGCCAAGGAAAGTTCAAATCACGAAGGTATCAATCCT
TTCATGAGCACAGACAGTGAGTTGAGCAATGATTCCGACAGGAACCCGTT
AAATCTTGAATTACTTGATTTCGGGAGTCTGGGAATCTGA
back to top

Coding sequence (CDS) from alignment at tig00000167_pilon:49555..50994-

>Ggra6209.t1 ID=Ggra6209.t1|Name=Ggra6209.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000167_pilon:49555..50994- (Gracilaria gracilis GNS1m male)
ATGAGCCTCAACCTTCCTGCGGAACAATCCTCATCCTTTCCACAATACCC
GCTCATTCTTGACGCGTATCAAGTTGGACGTCAATTGGGCCGTGGCTGTT
TCGAAAAGGTGTTCAAAGCCATTCGCAAACGTGACAGTAAATCTGTGGCA
ATCAAAGTACTTGAGAAGAAGCGACTGGATGATGAAACATCCGATTTACT
TCACAACGAGCTCCGTATTCTTCAGGCGGTATCAGAACATCCTGGCATTG
TAACACTACTTGACAGTCATGAGACAGACACTCACATGTTTTTCATCATG
GAGTACGTCGCTGGCGGTCCCTTGCTGGACAGAATCGTATCCAGGGGTTC
ACTTAGTGAGAATGACGCACGTATTCTGTTGAGGAGTCTTCTTCTTACCC
TGCGTTTCCTGAGTGAGCTTGGCTGCGTACATCGCGATATAAAGCCTGAA
AACATTCTGGTCGACAATCACAGCAAGAAGTGGCCCAAAAATTTGACGGA
CTTCGGTCTGTCAGAAAAGATGCAACCGGATCAACTTTTGACAGACGCAA
TAGGAACGCCTCTTTTCGTGGCTCCGGAAATTTTGAACGGCAATGGCTAT
GACTGTGCATGTGATATGTGGAGCCTTGGAGTGGTAATGTACATTGTGCT
TTGCGGTTATCCGCCCTTTCCAATATACGACGACCCACAGAAGTTAACCA
ACGCAATTGTGAACGGTGACTATTCTTTTCCTGTCGGAGAGTGGAACCGC
GTATCAGTTGATGCGAAGACAGTTGTGAGCGCAATGTTGCAAGTTGATCC
CGAAAAGCGTCTCACTCCGGCGCAGGCACTCGCGCATCCGTGGATCCGAA
TGTCTCAGTCCACAACCGATCTGCCTAATAGCAAACTCAAGTCTTTCAAT
GCTAGACGGAAACTGAAGGCTGGAGTCATGGCAGTGCGCACCACTTTCGG
GCTGCGTAATATTCTAGGACCAGAAGGACTGCGTTCTAGGCCTATCAATC
AAGAAACCCTGATAAGAGATGTAGAGAGAAGTCGGGCCTTGATAGCTCGT
GTAACCAAGTCAAGCAGCGATTCCTCCGATCGAGCAAAGGACAAAGCATA
TCTGTCAAGGTTAATCCCAGAGAACCAGGCACTATTATCGTGCAGGCGTT
CCCTCATCTTGCCCGTAAGCATGTCCGCCAAAGTTCAAGTAAACAACGGT
GCAAGCGACTACCCAGGAAGCCGACAGGACCATGGCGGGACGTTGCAGTC
CACCAACCTGTTGCTCAGCGAATCAGACGCACTGCAATCAAAAGCTTTGG
CAATGGCTGCCGAAGCCAAGGAAAGTTCAAATCACGAAGGTATCAATCCT
TTCATGAGCACAGACAGTGAGTTGAGCAATGATTCCGACAGGAACCCGTT
AAATCTTGAATTACTTGATTTCGGGAGTCTGGGAATCTGA
back to top