Ggra4987.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4987.t1
Unique NameGgra4987.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:244632..245660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395965.Msil_0990
Preferred nameera
PFAMsKH_2,MMR_HSR1
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03595
Evalue2.64e-43
EggNOG OGsCOG1159@1|root,COG1159@2|Bacteria,1MUKT@1224|Proteobacteria,2TSHM@28211|Alphaproteobacteria,3NAE6@45404|Beijerinckiaceae
DescriptionAn essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
COG categoryS
BRITEko00000,ko03009,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4987Ggra4987Gracilaria gracilis GNS1m malegenetig00000014_pilon 244632..245660 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4987.t1.stop1Ggra4987.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 244632..244634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4987.t1.CDS1Ggra4987.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 244632..245660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4987.t1.exon1Ggra4987.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 244632..245660 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4987.t1.start1Ggra4987.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 245658..245660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4987.t1Ggra4987.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 244632..245660 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4987.t1 ID=Ggra4987.t1|Name=Ggra4987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MMRSFLFQVRKPIQVWSQTKFAKCFATAPHFPTSDYSAILPEIPADARTA
SVAIIGAPNAGKSSLSNAMIECRVSAVSRKVNATRYRTVGAFTKGNRQLI
FWDTPGVVERQFVRTLGSERKELTTCGWGAAGDADIVVVVVDTSRGERYW
QRCARISEQVADIRSKNQRNGGLVLVLNKCDKVSPRSRILLAADFFQKDI
QNFATAFEDRIFMVSAYNGRGVKDLRDKLLDMTVEGDFEVPADTKHCEDD
LELIRQHVWEKLLHRVHDELPYRCRFENEKMMELPNGDVYVSEIIKVPRS
SAMGIVIGPGGRVIEWIRDTAEQSASEALGRTVHLKLRVAIA*
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spliced messenger RNA

>Ggra4987.t1 ID=Ggra4987.t1|Name=Ggra4987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000014_pilon:244632..245660- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGAAGCTTTCTCTTTCAGGTCAGAAAGCCCATACAAGTGTGGTC
GCAAACAAAGTTTGCGAAGTGTTTTGCTACCGCTCCGCATTTTCCGACGT
CAGACTACTCTGCAATACTGCCAGAGATCCCAGCTGATGCGAGGACTGCT
TCAGTTGCAATAATAGGGGCTCCCAATGCTGGGAAGTCGTCTTTATCGAA
TGCAATGATTGAATGTCGAGTTTCAGCGGTTTCTCGAAAAGTGAATGCAA
CTCGTTACCGCACTGTTGGCGCTTTTACGAAGGGAAATCGCCAACTAATA
TTCTGGGACACCCCAGGCGTTGTCGAACGCCAGTTTGTCAGGACGCTGGG
TTCCGAACGAAAAGAACTCACGACCTGTGGATGGGGAGCAGCTGGAGACG
CAGATATTGTCGTTGTGGTCGTAGATACTTCAAGGGGTGAAAGATACTGG
CAGAGATGTGCACGGATTTCGGAGCAAGTGGCAGACATTCGTAGCAAGAA
CCAACGAAATGGAGGTCTTGTGCTTGTGTTGAACAAGTGCGACAAGGTAT
CTCCACGATCTCGAATCTTGCTGGCCGCTGATTTCTTCCAAAAGGACATT
CAGAACTTCGCAACAGCGTTCGAGGACCGGATCTTTATGGTGTCTGCATA
CAATGGTCGCGGCGTGAAGGACTTGCGCGACAAGCTCCTTGACATGACAG
TTGAAGGCGATTTTGAAGTTCCTGCAGACACAAAGCATTGTGAGGACGAT
CTGGAACTTATAAGACAGCACGTCTGGGAAAAACTTCTGCATCGGGTGCA
TGACGAATTGCCCTACAGATGTAGATTTGAGAATGAGAAAATGATGGAAC
TACCAAACGGTGATGTTTACGTTTCTGAGATCATCAAAGTTCCGAGATCA
AGTGCCATGGGTATAGTTATCGGCCCTGGAGGTCGTGTAATTGAATGGAT
TCGCGATACTGCCGAGCAGAGCGCGAGCGAAGCATTAGGACGAACAGTGC
ACCTGAAACTGCGAGTTGCGATTGCGTAA
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protein sequence of Ggra4987.t1

>Ggra4987.t1 ID=Ggra4987.t1|Name=Ggra4987.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MMRSFLFQVRKPIQVWSQTKFAKCFATAPHFPTSDYSAILPEIPADARTA
SVAIIGAPNAGKSSLSNAMIECRVSAVSRKVNATRYRTVGAFTKGNRQLI
FWDTPGVVERQFVRTLGSERKELTTCGWGAAGDADIVVVVVDTSRGERYW
QRCARISEQVADIRSKNQRNGGLVLVLNKCDKVSPRSRILLAADFFQKDI
QNFATAFEDRIFMVSAYNGRGVKDLRDKLLDMTVEGDFEVPADTKHCEDD
LELIRQHVWEKLLHRVHDELPYRCRFENEKMMELPNGDVYVSEIIKVPRS
SAMGIVIGPGGRVIEWIRDTAEQSASEALGRTVHLKLRVAIA*
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mRNA from alignment at tig00000014_pilon:244632..245660-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4987.t1 ID=Ggra4987.t1|Name=Ggra4987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000014_pilon:244632..245660- (Gracilaria gracilis GNS1m male)
ATGATGCGAAGCTTTCTCTTTCAGGTCAGAAAGCCCATACAAGTGTGGTC
GCAAACAAAGTTTGCGAAGTGTTTTGCTACCGCTCCGCATTTTCCGACGT
CAGACTACTCTGCAATACTGCCAGAGATCCCAGCTGATGCGAGGACTGCT
TCAGTTGCAATAATAGGGGCTCCCAATGCTGGGAAGTCGTCTTTATCGAA
TGCAATGATTGAATGTCGAGTTTCAGCGGTTTCTCGAAAAGTGAATGCAA
CTCGTTACCGCACTGTTGGCGCTTTTACGAAGGGAAATCGCCAACTAATA
TTCTGGGACACCCCAGGCGTTGTCGAACGCCAGTTTGTCAGGACGCTGGG
TTCCGAACGAAAAGAACTCACGACCTGTGGATGGGGAGCAGCTGGAGACG
CAGATATTGTCGTTGTGGTCGTAGATACTTCAAGGGGTGAAAGATACTGG
CAGAGATGTGCACGGATTTCGGAGCAAGTGGCAGACATTCGTAGCAAGAA
CCAACGAAATGGAGGTCTTGTGCTTGTGTTGAACAAGTGCGACAAGGTAT
CTCCACGATCTCGAATCTTGCTGGCCGCTGATTTCTTCCAAAAGGACATT
CAGAACTTCGCAACAGCGTTCGAGGACCGGATCTTTATGGTGTCTGCATA
CAATGGTCGCGGCGTGAAGGACTTGCGCGACAAGCTCCTTGACATGACAG
TTGAAGGCGATTTTGAAGTTCCTGCAGACACAAAGCATTGTGAGGACGAT
CTGGAACTTATAAGACAGCACGTCTGGGAAAAACTTCTGCATCGGGTGCA
TGACGAATTGCCCTACAGATGTAGATTTGAGAATGAGAAAATGATGGAAC
TACCAAACGGTGATGTTTACGTTTCTGAGATCATCAAAGTTCCGAGATCA
AGTGCCATGGGTATAGTTATCGGCCCTGGAGGTCGTGTAATTGAATGGAT
TCGCGATACTGCCGAGCAGAGCGCGAGCGAAGCATTAGGACGAACAGTGC
ACCTGAAACTGCGAGTTGCGATTGCGTAA
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Coding sequence (CDS) from alignment at tig00000014_pilon:244632..245660-

>Ggra4987.t1 ID=Ggra4987.t1|Name=Ggra4987.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000014_pilon:244632..245660- (Gracilaria gracilis GNS1m male)
ATGATGCGAAGCTTTCTCTTTCAGGTCAGAAAGCCCATACAAGTGTGGTC
GCAAACAAAGTTTGCGAAGTGTTTTGCTACCGCTCCGCATTTTCCGACGT
CAGACTACTCTGCAATACTGCCAGAGATCCCAGCTGATGCGAGGACTGCT
TCAGTTGCAATAATAGGGGCTCCCAATGCTGGGAAGTCGTCTTTATCGAA
TGCAATGATTGAATGTCGAGTTTCAGCGGTTTCTCGAAAAGTGAATGCAA
CTCGTTACCGCACTGTTGGCGCTTTTACGAAGGGAAATCGCCAACTAATA
TTCTGGGACACCCCAGGCGTTGTCGAACGCCAGTTTGTCAGGACGCTGGG
TTCCGAACGAAAAGAACTCACGACCTGTGGATGGGGAGCAGCTGGAGACG
CAGATATTGTCGTTGTGGTCGTAGATACTTCAAGGGGTGAAAGATACTGG
CAGAGATGTGCACGGATTTCGGAGCAAGTGGCAGACATTCGTAGCAAGAA
CCAACGAAATGGAGGTCTTGTGCTTGTGTTGAACAAGTGCGACAAGGTAT
CTCCACGATCTCGAATCTTGCTGGCCGCTGATTTCTTCCAAAAGGACATT
CAGAACTTCGCAACAGCGTTCGAGGACCGGATCTTTATGGTGTCTGCATA
CAATGGTCGCGGCGTGAAGGACTTGCGCGACAAGCTCCTTGACATGACAG
TTGAAGGCGATTTTGAAGTTCCTGCAGACACAAAGCATTGTGAGGACGAT
CTGGAACTTATAAGACAGCACGTCTGGGAAAAACTTCTGCATCGGGTGCA
TGACGAATTGCCCTACAGATGTAGATTTGAGAATGAGAAAATGATGGAAC
TACCAAACGGTGATGTTTACGTTTCTGAGATCATCAAAGTTCCGAGATCA
AGTGCCATGGGTATAGTTATCGGCCCTGGAGGTCGTGTAATTGAATGGAT
TCGCGATACTGCCGAGCAGAGCGCGAGCGAAGCATTAGGACGAACAGTGC
ACCTGAAACTGCGAGTTGCGATTGCGTAA
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