Ggra4933.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4933.t1
Unique NameGgra4933.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:221411..222955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703130.1
Preferred namePOB3
PFAMsHMG_box,POB3_N,Rtt106,SSrecog
Max annot lvl2759|Eukaryota
KEGG koko:K09272
GOsGO:0000003,GO:0000228,GO:0000741,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005719,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0006997,GO:0007154,GO:0007275,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009553,GO:0009559,GO:0009561,GO:0009605,GO:0009607,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010197,GO:0010228,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022414,GO:0022607,GO:0030154,GO:0030447,GO:0030466,GO:0030702,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034724,GO:0034728,GO:0035101,GO:0036170,GO:0036180,GO:0040007,GO:0040029,GO:0042393,GO:0042594,GO:0042802,GO:0042803,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043486,GO:0043596,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046983,GO:0048229,GO:0048284,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070727,GO:0071103,GO:0071496,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990141,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141
Evalue1.74e-129
EggNOG OGsCOG5165@1|root,KOG0526@2759|Eukaryota
DescriptionDNA replication
COG categoryBKL
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4933Ggra4933Gracilaria gracilis GNS1m malegenetig00000157_pilon 221411..222955 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4933.t1.stop1Ggra4933.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 221411..221413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4933.t1.CDS1Ggra4933.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 221411..222955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4933.t1.exon1Ggra4933.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 221411..222955 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4933.t1.start1Ggra4933.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 222953..222955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4933.t1Ggra4933.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 221411..222955 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4933.t1 ID=Ggra4933.t1|Name=Ggra4933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MATDDGPVLSFNSISTAGQALASGTLRLSRAGFAWRAKGSTRNLSVASTD
LLKVEWLRGGRGHQLKLSLRGGSTLRLEGFRASDYSSIGEFVSDHLGGKT
LTRVNQACRGWSWGELDVTSGAASNLIFRTGGGNNVRTKALQFEEAFEIP
LGKVANVQLPGNGKELALDFHVDDTAGKMDEELVEMRFFIPVEKEAEDVY
EQVKARADTSAFAGESLCSFTHMGVAVPRGRYDVDMYANYIKLRGKAVDF
KILYSSIIRLFLLPKPDNIIVSFVMSLDPPIRQGNTMYPHLVFQFDTEEK
TRVDLPISAQDLQNKYKGKLNETESGYTWRVFSKVLKNLSATPLHVPKSF
KSTENGSGVRTALGANEGFLFFLETCCFFVNKPPTYFRYDDIDFVEFRRM
DLERRFDLFIAMSTGTNQTHLFTNIERSEFEPIFSFLHETKKVPVEGAEQ
LKRTGGRQQMRMMDVDDDSESDDDDFNPDAQDKEAASESSSDSEDDMPDE
DDEESRPPRKKKKN*
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spliced messenger RNA

>Ggra4933.t1 ID=Ggra4933.t1|Name=Ggra4933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000157_pilon:221411..222955- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACAGACGACGGTCCGGTTCTGTCCTTCAATTCTATATCCACTGC
AGGTCAAGCGCTTGCATCCGGTACACTGAGATTGTCACGCGCGGGATTTG
CCTGGCGGGCAAAAGGGTCGACTCGCAATCTCTCGGTTGCATCAACAGAT
CTGCTTAAAGTGGAGTGGTTGCGCGGTGGACGCGGCCATCAACTTAAGCT
CTCCCTGCGCGGTGGATCAACACTCCGCCTTGAGGGTTTTCGTGCGTCTG
ACTATTCTTCAATTGGAGAGTTTGTCTCGGACCATCTTGGAGGGAAGACC
CTTACTCGTGTGAATCAAGCATGTCGAGGATGGTCATGGGGCGAACTGGA
TGTAACCAGTGGAGCTGCTTCAAATCTTATCTTTCGGACGGGAGGTGGTA
ACAACGTTAGAACAAAGGCCTTGCAGTTTGAGGAAGCTTTTGAAATCCCA
CTGGGAAAGGTTGCAAATGTGCAGTTGCCCGGCAATGGTAAAGAACTTGC
CTTGGATTTTCACGTCGATGATACTGCTGGCAAGATGGATGAAGAGCTGG
TTGAAATGAGATTCTTTATTCCGGTGGAGAAAGAAGCAGAGGATGTCTAC
GAGCAAGTTAAGGCAAGAGCCGACACCAGCGCCTTTGCAGGAGAGAGTTT
ATGCTCGTTTACGCACATGGGAGTGGCTGTACCAAGAGGAAGATATGATG
TAGATATGTACGCGAACTACATCAAACTTCGTGGTAAAGCGGTTGATTTC
AAGATATTGTATTCTTCTATCATCCGCTTGTTCCTGTTGCCGAAACCGGA
TAATATAATTGTGTCGTTTGTCATGTCTCTCGATCCTCCCATCAGACAGG
GAAACACAATGTATCCTCATTTAGTTTTTCAGTTCGATACGGAAGAGAAG
ACACGCGTGGACTTGCCCATTTCTGCGCAAGATTTGCAAAACAAATACAA
AGGCAAGTTGAACGAGACAGAGAGCGGATATACCTGGCGTGTGTTTTCCA
AGGTTCTGAAGAATTTATCGGCAACGCCTCTACACGTACCGAAGTCGTTC
AAGAGCACAGAAAATGGCTCCGGGGTACGCACGGCTCTTGGTGCGAATGA
AGGATTTCTGTTTTTCCTTGAAACATGCTGTTTCTTTGTGAACAAACCTC
CAACATATTTTAGATATGATGATATTGACTTCGTTGAGTTCAGAAGAATG
GATCTCGAAAGGCGATTTGATTTATTCATAGCTATGTCTACTGGAACAAA
TCAGACTCATCTCTTTACCAACATTGAACGATCGGAGTTTGAACCTATAT
TTTCATTCCTCCACGAGACAAAGAAGGTTCCTGTTGAAGGGGCGGAACAA
CTGAAACGAACGGGTGGCAGACAGCAGATGAGAATGATGGATGTTGATGA
CGATTCAGAGAGTGATGATGATGACTTTAATCCTGATGCTCAAGACAAAG
AGGCCGCCAGTGAAAGCTCTAGCGATAGCGAAGATGATATGCCAGATGAA
GACGACGAAGAATCAAGACCGCCGCGGAAAAAGAAGAAAAACTAG
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protein sequence of Ggra4933.t1

>Ggra4933.t1 ID=Ggra4933.t1|Name=Ggra4933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MATDDGPVLSFNSISTAGQALASGTLRLSRAGFAWRAKGSTRNLSVASTD
LLKVEWLRGGRGHQLKLSLRGGSTLRLEGFRASDYSSIGEFVSDHLGGKT
LTRVNQACRGWSWGELDVTSGAASNLIFRTGGGNNVRTKALQFEEAFEIP
LGKVANVQLPGNGKELALDFHVDDTAGKMDEELVEMRFFIPVEKEAEDVY
EQVKARADTSAFAGESLCSFTHMGVAVPRGRYDVDMYANYIKLRGKAVDF
KILYSSIIRLFLLPKPDNIIVSFVMSLDPPIRQGNTMYPHLVFQFDTEEK
TRVDLPISAQDLQNKYKGKLNETESGYTWRVFSKVLKNLSATPLHVPKSF
KSTENGSGVRTALGANEGFLFFLETCCFFVNKPPTYFRYDDIDFVEFRRM
DLERRFDLFIAMSTGTNQTHLFTNIERSEFEPIFSFLHETKKVPVEGAEQ
LKRTGGRQQMRMMDVDDDSESDDDDFNPDAQDKEAASESSSDSEDDMPDE
DDEESRPPRKKKKN*
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mRNA from alignment at tig00000157_pilon:221411..222955-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4933.t1 ID=Ggra4933.t1|Name=Ggra4933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000157_pilon:221411..222955- (Gracilaria gracilis GNS1m male)
ATGGCTACAGACGACGGTCCGGTTCTGTCCTTCAATTCTATATCCACTGC
AGGTCAAGCGCTTGCATCCGGTACACTGAGATTGTCACGCGCGGGATTTG
CCTGGCGGGCAAAAGGGTCGACTCGCAATCTCTCGGTTGCATCAACAGAT
CTGCTTAAAGTGGAGTGGTTGCGCGGTGGACGCGGCCATCAACTTAAGCT
CTCCCTGCGCGGTGGATCAACACTCCGCCTTGAGGGTTTTCGTGCGTCTG
ACTATTCTTCAATTGGAGAGTTTGTCTCGGACCATCTTGGAGGGAAGACC
CTTACTCGTGTGAATCAAGCATGTCGAGGATGGTCATGGGGCGAACTGGA
TGTAACCAGTGGAGCTGCTTCAAATCTTATCTTTCGGACGGGAGGTGGTA
ACAACGTTAGAACAAAGGCCTTGCAGTTTGAGGAAGCTTTTGAAATCCCA
CTGGGAAAGGTTGCAAATGTGCAGTTGCCCGGCAATGGTAAAGAACTTGC
CTTGGATTTTCACGTCGATGATACTGCTGGCAAGATGGATGAAGAGCTGG
TTGAAATGAGATTCTTTATTCCGGTGGAGAAAGAAGCAGAGGATGTCTAC
GAGCAAGTTAAGGCAAGAGCCGACACCAGCGCCTTTGCAGGAGAGAGTTT
ATGCTCGTTTACGCACATGGGAGTGGCTGTACCAAGAGGAAGATATGATG
TAGATATGTACGCGAACTACATCAAACTTCGTGGTAAAGCGGTTGATTTC
AAGATATTGTATTCTTCTATCATCCGCTTGTTCCTGTTGCCGAAACCGGA
TAATATAATTGTGTCGTTTGTCATGTCTCTCGATCCTCCCATCAGACAGG
GAAACACAATGTATCCTCATTTAGTTTTTCAGTTCGATACGGAAGAGAAG
ACACGCGTGGACTTGCCCATTTCTGCGCAAGATTTGCAAAACAAATACAA
AGGCAAGTTGAACGAGACAGAGAGCGGATATACCTGGCGTGTGTTTTCCA
AGGTTCTGAAGAATTTATCGGCAACGCCTCTACACGTACCGAAGTCGTTC
AAGAGCACAGAAAATGGCTCCGGGGTACGCACGGCTCTTGGTGCGAATGA
AGGATTTCTGTTTTTCCTTGAAACATGCTGTTTCTTTGTGAACAAACCTC
CAACATATTTTAGATATGATGATATTGACTTCGTTGAGTTCAGAAGAATG
GATCTCGAAAGGCGATTTGATTTATTCATAGCTATGTCTACTGGAACAAA
TCAGACTCATCTCTTTACCAACATTGAACGATCGGAGTTTGAACCTATAT
TTTCATTCCTCCACGAGACAAAGAAGGTTCCTGTTGAAGGGGCGGAACAA
CTGAAACGAACGGGTGGCAGACAGCAGATGAGAATGATGGATGTTGATGA
CGATTCAGAGAGTGATGATGATGACTTTAATCCTGATGCTCAAGACAAAG
AGGCCGCCAGTGAAAGCTCTAGCGATAGCGAAGATGATATGCCAGATGAA
GACGACGAAGAATCAAGACCGCCGCGGAAAAAGAAGAAAAACTAG
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Coding sequence (CDS) from alignment at tig00000157_pilon:221411..222955-

>Ggra4933.t1 ID=Ggra4933.t1|Name=Ggra4933.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000157_pilon:221411..222955- (Gracilaria gracilis GNS1m male)
ATGGCTACAGACGACGGTCCGGTTCTGTCCTTCAATTCTATATCCACTGC
AGGTCAAGCGCTTGCATCCGGTACACTGAGATTGTCACGCGCGGGATTTG
CCTGGCGGGCAAAAGGGTCGACTCGCAATCTCTCGGTTGCATCAACAGAT
CTGCTTAAAGTGGAGTGGTTGCGCGGTGGACGCGGCCATCAACTTAAGCT
CTCCCTGCGCGGTGGATCAACACTCCGCCTTGAGGGTTTTCGTGCGTCTG
ACTATTCTTCAATTGGAGAGTTTGTCTCGGACCATCTTGGAGGGAAGACC
CTTACTCGTGTGAATCAAGCATGTCGAGGATGGTCATGGGGCGAACTGGA
TGTAACCAGTGGAGCTGCTTCAAATCTTATCTTTCGGACGGGAGGTGGTA
ACAACGTTAGAACAAAGGCCTTGCAGTTTGAGGAAGCTTTTGAAATCCCA
CTGGGAAAGGTTGCAAATGTGCAGTTGCCCGGCAATGGTAAAGAACTTGC
CTTGGATTTTCACGTCGATGATACTGCTGGCAAGATGGATGAAGAGCTGG
TTGAAATGAGATTCTTTATTCCGGTGGAGAAAGAAGCAGAGGATGTCTAC
GAGCAAGTTAAGGCAAGAGCCGACACCAGCGCCTTTGCAGGAGAGAGTTT
ATGCTCGTTTACGCACATGGGAGTGGCTGTACCAAGAGGAAGATATGATG
TAGATATGTACGCGAACTACATCAAACTTCGTGGTAAAGCGGTTGATTTC
AAGATATTGTATTCTTCTATCATCCGCTTGTTCCTGTTGCCGAAACCGGA
TAATATAATTGTGTCGTTTGTCATGTCTCTCGATCCTCCCATCAGACAGG
GAAACACAATGTATCCTCATTTAGTTTTTCAGTTCGATACGGAAGAGAAG
ACACGCGTGGACTTGCCCATTTCTGCGCAAGATTTGCAAAACAAATACAA
AGGCAAGTTGAACGAGACAGAGAGCGGATATACCTGGCGTGTGTTTTCCA
AGGTTCTGAAGAATTTATCGGCAACGCCTCTACACGTACCGAAGTCGTTC
AAGAGCACAGAAAATGGCTCCGGGGTACGCACGGCTCTTGGTGCGAATGA
AGGATTTCTGTTTTTCCTTGAAACATGCTGTTTCTTTGTGAACAAACCTC
CAACATATTTTAGATATGATGATATTGACTTCGTTGAGTTCAGAAGAATG
GATCTCGAAAGGCGATTTGATTTATTCATAGCTATGTCTACTGGAACAAA
TCAGACTCATCTCTTTACCAACATTGAACGATCGGAGTTTGAACCTATAT
TTTCATTCCTCCACGAGACAAAGAAGGTTCCTGTTGAAGGGGCGGAACAA
CTGAAACGAACGGGTGGCAGACAGCAGATGAGAATGATGGATGTTGATGA
CGATTCAGAGAGTGATGATGATGACTTTAATCCTGATGCTCAAGACAAAG
AGGCCGCCAGTGAAAGCTCTAGCGATAGCGAAGATGATATGCCAGATGAA
GACGACGAAGAATCAAGACCGCCGCGGAAAAAGAAGAAAAACTAG
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