Ggra552.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra552.t1
Unique Name	Ggra552.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	500

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000153_pilon	contig	tig00000153_pilon:259083..260582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706629.1
PFAMs	ATP-grasp_4
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00064,RC00090
KEGG ko	ko:K14755
KEGG Reaction	R00910,R00912,R01164,R01991,R03286
KEGG Pathway	ko00330,ko00340,ko00410,map00330,map00340,map00410
Evalue	1.54e-116
EggNOG OGs	COG0439@1\|root,2RN4Y@2759\|Eukaryota
EC	6.3.2.11
Description	ATP-grasp domain
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra552	Ggra552	Gracilaria gracilis GNS1m male	gene	tig00000153_pilon 259083..260582 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra552.t1.start1	Ggra552.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000153_pilon 259083..259085 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra552.t1.CDS1	Ggra552.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000153_pilon 259083..260582 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra552.t1.exon1	Ggra552.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000153_pilon 259083..260582 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra552.t1.stop1	Ggra552.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000153_pilon 260580..260582 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra552.t1	Ggra552.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000153_pilon 259083..260582 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000153_pilon:259083..260582+
coding sequence from alignment at tig00000153_pilon:259083..260582+

mRNA sequence

>Ggra552.t1 ID=Ggra552.t1|Name=Ggra552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MTKPQSLELNIPTSCAISKGTPVALPHSAKHSNSSSIHPVPLRDASSGAQ
QLRQRSLEGANLLIVQGGGPPRRFIYDHLRRRGVNVYIMDEPHTVWKSLA
ENGDLAGFIPFEVTDPIDVGNRAARVLHQAGLSGFFHGITTYYEDAVSIA
AQIAQVQGLAMNPPSVYENARCKYSSRKVMANAGLPVPRFFAINSESDVA
SACENVGFPAILKPWCGTGSIGVTRVDCMEEAIASYRTLKLDLDPVKDPL
WAQGSQVLLEEFLDGDEFDIDILLCDRCVVHAKVSDNWPCQKPYFAESVM
NCPSLLSQEKQDELTQLAVKTVLALGFKMGCVHVEAKYTSKGPRVIEVNG
RMGGGPVHLLHSLVWGVDFVEAHCMCALNIAISSRTVAKPMKYCSWMTLQ
APYSGTVTRDGWLDFLFDNAIVLDVTYLKNKGDRVVGPEEGMPTWMALIT
VGCDKNHKLGFQLLRSIVTELAPVPIGTPDGVVTTGFYFPEPPSFFDHC*

spliced messenger RNA

>Ggra552.t1 ID=Ggra552.t1|Name=Ggra552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000153_pilon:259083..260582+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAGCCACAAAGCCTAGAATTGAACATCCCTACATCCTGTGCAAT
CAGTAAAGGCACGCCGGTCGCTCTCCCTCATTCCGCAAAGCATTCAAACT
CTTCTTCAATCCATCCGGTACCGCTTCGCGATGCGTCTTCGGGCGCCCAA
CAACTGCGCCAAAGATCGCTCGAAGGCGCCAATCTGCTTATCGTTCAGGG
TGGCGGGCCACCGCGAAGATTCATATACGACCATCTTCGCCGTCGGGGAG
TCAACGTATACATAATGGACGAGCCTCATACCGTATGGAAATCGTTAGCA
GAAAACGGAGATCTCGCTGGTTTCATTCCTTTTGAAGTCACCGATCCCAT
AGACGTCGGTAACCGAGCAGCTCGCGTGCTGCACCAAGCTGGGTTGAGTG
GCTTCTTCCACGGTATCACCACGTACTACGAAGATGCGGTTTCCATCGCA
GCCCAGATTGCTCAAGTGCAAGGCTTGGCAATGAATCCACCCTCCGTATA
CGAGAACGCGCGATGCAAATATTCCTCGCGCAAAGTAATGGCCAATGCAG
GCCTCCCAGTGCCTCGTTTTTTCGCCATCAACTCTGAGAGCGACGTTGCC
AGCGCATGCGAAAATGTTGGATTCCCTGCCATTCTCAAGCCTTGGTGTGG
TACTGGCTCTATCGGTGTAACACGCGTTGACTGCATGGAGGAGGCAATTG
CGTCATATCGTACTCTCAAATTGGATTTAGACCCTGTCAAGGATCCGCTT
TGGGCGCAAGGCTCACAAGTTTTGCTTGAAGAATTCTTAGATGGTGACGA
GTTCGATATCGACATTTTGTTGTGTGATAGATGCGTGGTTCATGCCAAGG
TGAGCGACAACTGGCCCTGTCAGAAGCCGTACTTTGCCGAGTCGGTTATG
AACTGCCCTTCTTTGCTTTCACAAGAAAAGCAAGACGAACTTACTCAGTT
GGCCGTCAAGACTGTGTTAGCTCTGGGTTTCAAGATGGGCTGCGTGCACG
TTGAGGCCAAGTACACATCAAAGGGGCCACGAGTTATTGAAGTGAATGGT
CGCATGGGTGGTGGCCCAGTGCACTTGTTGCACTCGTTGGTATGGGGTGT
AGACTTTGTGGAGGCACATTGCATGTGCGCACTCAACATTGCCATCAGCT
CTCGTACTGTGGCCAAGCCCATGAAGTATTGCTCGTGGATGACATTACAG
GCGCCGTATTCCGGAACGGTTACTCGTGATGGGTGGCTTGACTTTTTGTT
TGATAACGCGATTGTGCTTGATGTGACGTATCTAAAGAACAAAGGGGATA
GAGTTGTTGGGCCGGAGGAAGGAATGCCCACGTGGATGGCGCTTATCACG
GTGGGATGTGACAAAAATCACAAGCTTGGTTTTCAGTTACTCCGAAGCAT
TGTTACGGAGCTCGCCCCTGTACCAATTGGCACCCCAGACGGAGTGGTCA
CGACCGGTTTCTATTTCCCAGAACCTCCTTCATTCTTCGACCATTGCTAG

protein sequence of Ggra552.t1

>Ggra552.t1 ID=Ggra552.t1|Name=Ggra552.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MTKPQSLELNIPTSCAISKGTPVALPHSAKHSNSSSIHPVPLRDASSGAQ
QLRQRSLEGANLLIVQGGGPPRRFIYDHLRRRGVNVYIMDEPHTVWKSLA
ENGDLAGFIPFEVTDPIDVGNRAARVLHQAGLSGFFHGITTYYEDAVSIA
AQIAQVQGLAMNPPSVYENARCKYSSRKVMANAGLPVPRFFAINSESDVA
SACENVGFPAILKPWCGTGSIGVTRVDCMEEAIASYRTLKLDLDPVKDPL
WAQGSQVLLEEFLDGDEFDIDILLCDRCVVHAKVSDNWPCQKPYFAESVM
NCPSLLSQEKQDELTQLAVKTVLALGFKMGCVHVEAKYTSKGPRVIEVNG
RMGGGPVHLLHSLVWGVDFVEAHCMCALNIAISSRTVAKPMKYCSWMTLQ
APYSGTVTRDGWLDFLFDNAIVLDVTYLKNKGDRVVGPEEGMPTWMALIT
VGCDKNHKLGFQLLRSIVTELAPVPIGTPDGVVTTGFYFPEPPSFFDHC*

mRNA from alignment at tig00000153_pilon:259083..260582+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra552.t1 ID=Ggra552.t1|Name=Ggra552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000153_pilon:259083..260582+ (Gracilaria gracilis GNS1m male)
ATGACCAAGCCACAAAGCCTAGAATTGAACATCCCTACATCCTGTGCAAT
CAGTAAAGGCACGCCGGTCGCTCTCCCTCATTCCGCAAAGCATTCAAACT
CTTCTTCAATCCATCCGGTACCGCTTCGCGATGCGTCTTCGGGCGCCCAA
CAACTGCGCCAAAGATCGCTCGAAGGCGCCAATCTGCTTATCGTTCAGGG
TGGCGGGCCACCGCGAAGATTCATATACGACCATCTTCGCCGTCGGGGAG
TCAACGTATACATAATGGACGAGCCTCATACCGTATGGAAATCGTTAGCA
GAAAACGGAGATCTCGCTGGTTTCATTCCTTTTGAAGTCACCGATCCCAT
AGACGTCGGTAACCGAGCAGCTCGCGTGCTGCACCAAGCTGGGTTGAGTG
GCTTCTTCCACGGTATCACCACGTACTACGAAGATGCGGTTTCCATCGCA
GCCCAGATTGCTCAAGTGCAAGGCTTGGCAATGAATCCACCCTCCGTATA
CGAGAACGCGCGATGCAAATATTCCTCGCGCAAAGTAATGGCCAATGCAG
GCCTCCCAGTGCCTCGTTTTTTCGCCATCAACTCTGAGAGCGACGTTGCC
AGCGCATGCGAAAATGTTGGATTCCCTGCCATTCTCAAGCCTTGGTGTGG
TACTGGCTCTATCGGTGTAACACGCGTTGACTGCATGGAGGAGGCAATTG
CGTCATATCGTACTCTCAAATTGGATTTAGACCCTGTCAAGGATCCGCTT
TGGGCGCAAGGCTCACAAGTTTTGCTTGAAGAATTCTTAGATGGTGACGA
GTTCGATATCGACATTTTGTTGTGTGATAGATGCGTGGTTCATGCCAAGG
TGAGCGACAACTGGCCCTGTCAGAAGCCGTACTTTGCCGAGTCGGTTATG
AACTGCCCTTCTTTGCTTTCACAAGAAAAGCAAGACGAACTTACTCAGTT
GGCCGTCAAGACTGTGTTAGCTCTGGGTTTCAAGATGGGCTGCGTGCACG
TTGAGGCCAAGTACACATCAAAGGGGCCACGAGTTATTGAAGTGAATGGT
CGCATGGGTGGTGGCCCAGTGCACTTGTTGCACTCGTTGGTATGGGGTGT
AGACTTTGTGGAGGCACATTGCATGTGCGCACTCAACATTGCCATCAGCT
CTCGTACTGTGGCCAAGCCCATGAAGTATTGCTCGTGGATGACATTACAG
GCGCCGTATTCCGGAACGGTTACTCGTGATGGGTGGCTTGACTTTTTGTT
TGATAACGCGATTGTGCTTGATGTGACGTATCTAAAGAACAAAGGGGATA
GAGTTGTTGGGCCGGAGGAAGGAATGCCCACGTGGATGGCGCTTATCACG
GTGGGATGTGACAAAAATCACAAGCTTGGTTTTCAGTTACTCCGAAGCAT
TGTTACGGAGCTCGCCCCTGTACCAATTGGCACCCCAGACGGAGTGGTCA
CGACCGGTTTCTATTTCCCAGAACCTCCTTCATTCTTCGACCATTGCTAG

Coding sequence (CDS) from alignment at tig00000153_pilon:259083..260582+

>Ggra552.t1 ID=Ggra552.t1|Name=Ggra552.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000153_pilon:259083..260582+ (Gracilaria gracilis GNS1m male)
ATGACCAAGCCACAAAGCCTAGAATTGAACATCCCTACATCCTGTGCAAT
CAGTAAAGGCACGCCGGTCGCTCTCCCTCATTCCGCAAAGCATTCAAACT
CTTCTTCAATCCATCCGGTACCGCTTCGCGATGCGTCTTCGGGCGCCCAA
CAACTGCGCCAAAGATCGCTCGAAGGCGCCAATCTGCTTATCGTTCAGGG
TGGCGGGCCACCGCGAAGATTCATATACGACCATCTTCGCCGTCGGGGAG
TCAACGTATACATAATGGACGAGCCTCATACCGTATGGAAATCGTTAGCA
GAAAACGGAGATCTCGCTGGTTTCATTCCTTTTGAAGTCACCGATCCCAT
AGACGTCGGTAACCGAGCAGCTCGCGTGCTGCACCAAGCTGGGTTGAGTG
GCTTCTTCCACGGTATCACCACGTACTACGAAGATGCGGTTTCCATCGCA
GCCCAGATTGCTCAAGTGCAAGGCTTGGCAATGAATCCACCCTCCGTATA
CGAGAACGCGCGATGCAAATATTCCTCGCGCAAAGTAATGGCCAATGCAG
GCCTCCCAGTGCCTCGTTTTTTCGCCATCAACTCTGAGAGCGACGTTGCC
AGCGCATGCGAAAATGTTGGATTCCCTGCCATTCTCAAGCCTTGGTGTGG
TACTGGCTCTATCGGTGTAACACGCGTTGACTGCATGGAGGAGGCAATTG
CGTCATATCGTACTCTCAAATTGGATTTAGACCCTGTCAAGGATCCGCTT
TGGGCGCAAGGCTCACAAGTTTTGCTTGAAGAATTCTTAGATGGTGACGA
GTTCGATATCGACATTTTGTTGTGTGATAGATGCGTGGTTCATGCCAAGG
TGAGCGACAACTGGCCCTGTCAGAAGCCGTACTTTGCCGAGTCGGTTATG
AACTGCCCTTCTTTGCTTTCACAAGAAAAGCAAGACGAACTTACTCAGTT
GGCCGTCAAGACTGTGTTAGCTCTGGGTTTCAAGATGGGCTGCGTGCACG
TTGAGGCCAAGTACACATCAAAGGGGCCACGAGTTATTGAAGTGAATGGT
CGCATGGGTGGTGGCCCAGTGCACTTGTTGCACTCGTTGGTATGGGGTGT
AGACTTTGTGGAGGCACATTGCATGTGCGCACTCAACATTGCCATCAGCT
CTCGTACTGTGGCCAAGCCCATGAAGTATTGCTCGTGGATGACATTACAG
GCGCCGTATTCCGGAACGGTTACTCGTGATGGGTGGCTTGACTTTTTGTT
TGATAACGCGATTGTGCTTGATGTGACGTATCTAAAGAACAAAGGGGATA
GAGTTGTTGGGCCGGAGGAAGGAATGCCCACGTGGATGGCGCTTATCACG
GTGGGATGTGACAAAAATCACAAGCTTGGTTTTCAGTTACTCCGAAGCAT
TGTTACGGAGCTCGCCCCTGTACCAATTGGCACCCCAGACGGAGTGGTCA
CGACCGGTTTCTATTTCCCAGAACCTCCTTCATTCTTCGACCATTGCTAG