Ggra9898.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9898.t1
Unique NameGgra9898.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:135771..136838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T009594
PFAMsADH_N,ADH_zinc_N_2
Max annot lvl121069|Pythiales
Evalue9.11e-59
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota,1MG40@121069|Pythiales
DescriptionSource PGD
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9898Ggra9898Gracilaria gracilis GNS1m malegenetig00000009_pilon 135771..136838 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9898.t1.stop1Ggra9898.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 135771..135773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9898.t1.CDS1Ggra9898.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 135771..136838 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9898.t1.exon1Ggra9898.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 135771..136838 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9898.t1.start1Ggra9898.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 136836..136838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9898.t1Ggra9898.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 135771..136838 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9898.t1 ID=Ggra9898.t1|Name=Ggra9898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MKAAQVTAFGSPAEVLSVSEDVKPPSHPPKNHVLIRVHAVSLSPSDYRML
TGAGDLIKKPPKNQWPYIPGGDLAGIVEEVGEQVSGFQKGDEVVATWDVY
GIGALAELAVVHVKFVYRKPKNLSFVEAASVIDSSSNALLALEDAQVKSG
DRVLVLGGSGGVGTSLLQLLRRASVSHIVTTSTDKELCLQLGADHVVNYR
EVDWWKAPEITEQPFDVVIDCAEGVSAWKKVRELNLIKSGPEGGRFLAVV
VNDWHIEIHHCWQMLSWFMPVAFRLVSSRCNRSSPSYTMLFPAPRGDSNR
RLLDIVEEGGLKVVIDPESPHKFTAEGVRDAFDKMIARKGHGKVVISIVD
DRSSN*
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spliced messenger RNA

>Ggra9898.t1 ID=Ggra9898.t1|Name=Ggra9898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000009_pilon:135771..136838- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCAGCTCAAGTCACCGCTTTCGGCAGCCCCGCTGAAGTACTCTC
CGTCTCTGAAGACGTCAAACCTCCATCGCATCCCCCAAAAAATCACGTTC
TGATCCGTGTGCACGCTGTCTCCCTAAGCCCCAGCGACTATCGCATGCTC
ACAGGAGCTGGTGATCTCATAAAAAAGCCACCCAAGAACCAATGGCCGTA
CATCCCTGGCGGAGATCTGGCTGGAATCGTTGAAGAAGTTGGGGAGCAAG
TCTCTGGTTTCCAGAAGGGGGATGAAGTCGTTGCTACGTGGGACGTTTAT
GGTATCGGTGCTTTGGCAGAGCTGGCTGTCGTCCACGTCAAGTTTGTCTA
TCGAAAGCCGAAGAACCTCTCGTTCGTTGAGGCTGCTTCTGTCATCGACA
GTTCTTCGAACGCTCTACTCGCGCTTGAAGACGCCCAAGTGAAAAGCGGG
GATCGCGTCCTTGTACTTGGCGGGAGTGGCGGTGTTGGTACCTCCCTCCT
TCAGCTTCTTCGCAGAGCAAGCGTATCTCACATTGTAACTACCTCTACTG
ATAAAGAGCTTTGCTTACAACTCGGAGCAGATCACGTCGTCAACTATCGT
GAAGTTGATTGGTGGAAAGCGCCCGAAATCACAGAGCAGCCCTTTGACGT
TGTTATCGATTGCGCAGAAGGTGTTTCTGCCTGGAAGAAAGTACGAGAAC
TCAATCTGATCAAATCTGGGCCAGAAGGTGGCCGTTTCTTGGCCGTTGTT
GTGAATGATTGGCACATAGAAATTCATCACTGTTGGCAAATGCTATCCTG
GTTTATGCCGGTCGCCTTCAGGTTAGTTTCGAGCAGGTGCAATCGATCGT
CGCCATCGTACACTATGCTGTTTCCTGCACCTCGAGGAGACTCTAACCGT
CGCTTATTGGACATTGTTGAGGAGGGTGGGCTGAAAGTTGTCATAGATCC
GGAATCTCCCCACAAGTTCACCGCAGAGGGAGTTCGTGACGCGTTTGACA
AAATGATAGCAAGGAAGGGTCACGGAAAGGTGGTTATCTCGATTGTGGAT
GACAGATCTTCTAATTAG
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protein sequence of Ggra9898.t1

>Ggra9898.t1 ID=Ggra9898.t1|Name=Ggra9898.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MKAAQVTAFGSPAEVLSVSEDVKPPSHPPKNHVLIRVHAVSLSPSDYRML
TGAGDLIKKPPKNQWPYIPGGDLAGIVEEVGEQVSGFQKGDEVVATWDVY
GIGALAELAVVHVKFVYRKPKNLSFVEAASVIDSSSNALLALEDAQVKSG
DRVLVLGGSGGVGTSLLQLLRRASVSHIVTTSTDKELCLQLGADHVVNYR
EVDWWKAPEITEQPFDVVIDCAEGVSAWKKVRELNLIKSGPEGGRFLAVV
VNDWHIEIHHCWQMLSWFMPVAFRLVSSRCNRSSPSYTMLFPAPRGDSNR
RLLDIVEEGGLKVVIDPESPHKFTAEGVRDAFDKMIARKGHGKVVISIVD
DRSSN*
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mRNA from alignment at tig00000009_pilon:135771..136838-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9898.t1 ID=Ggra9898.t1|Name=Ggra9898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000009_pilon:135771..136838- (Gracilaria gracilis GNS1m male)
ATGAAGGCAGCTCAAGTCACCGCTTTCGGCAGCCCCGCTGAAGTACTCTC
CGTCTCTGAAGACGTCAAACCTCCATCGCATCCCCCAAAAAATCACGTTC
TGATCCGTGTGCACGCTGTCTCCCTAAGCCCCAGCGACTATCGCATGCTC
ACAGGAGCTGGTGATCTCATAAAAAAGCCACCCAAGAACCAATGGCCGTA
CATCCCTGGCGGAGATCTGGCTGGAATCGTTGAAGAAGTTGGGGAGCAAG
TCTCTGGTTTCCAGAAGGGGGATGAAGTCGTTGCTACGTGGGACGTTTAT
GGTATCGGTGCTTTGGCAGAGCTGGCTGTCGTCCACGTCAAGTTTGTCTA
TCGAAAGCCGAAGAACCTCTCGTTCGTTGAGGCTGCTTCTGTCATCGACA
GTTCTTCGAACGCTCTACTCGCGCTTGAAGACGCCCAAGTGAAAAGCGGG
GATCGCGTCCTTGTACTTGGCGGGAGTGGCGGTGTTGGTACCTCCCTCCT
TCAGCTTCTTCGCAGAGCAAGCGTATCTCACATTGTAACTACCTCTACTG
ATAAAGAGCTTTGCTTACAACTCGGAGCAGATCACGTCGTCAACTATCGT
GAAGTTGATTGGTGGAAAGCGCCCGAAATCACAGAGCAGCCCTTTGACGT
TGTTATCGATTGCGCAGAAGGTGTTTCTGCCTGGAAGAAAGTACGAGAAC
TCAATCTGATCAAATCTGGGCCAGAAGGTGGCCGTTTCTTGGCCGTTGTT
GTGAATGATTGGCACATAGAAATTCATCACTGTTGGCAAATGCTATCCTG
GTTTATGCCGGTCGCCTTCAGGTTAGTTTCGAGCAGGTGCAATCGATCGT
CGCCATCGTACACTATGCTGTTTCCTGCACCTCGAGGAGACTCTAACCGT
CGCTTATTGGACATTGTTGAGGAGGGTGGGCTGAAAGTTGTCATAGATCC
GGAATCTCCCCACAAGTTCACCGCAGAGGGAGTTCGTGACGCGTTTGACA
AAATGATAGCAAGGAAGGGTCACGGAAAGGTGGTTATCTCGATTGTGGAT
GACAGATCTTCTAATTAG
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Coding sequence (CDS) from alignment at tig00000009_pilon:135771..136838-

>Ggra9898.t1 ID=Ggra9898.t1|Name=Ggra9898.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000009_pilon:135771..136838- (Gracilaria gracilis GNS1m male)
ATGAAGGCAGCTCAAGTCACCGCTTTCGGCAGCCCCGCTGAAGTACTCTC
CGTCTCTGAAGACGTCAAACCTCCATCGCATCCCCCAAAAAATCACGTTC
TGATCCGTGTGCACGCTGTCTCCCTAAGCCCCAGCGACTATCGCATGCTC
ACAGGAGCTGGTGATCTCATAAAAAAGCCACCCAAGAACCAATGGCCGTA
CATCCCTGGCGGAGATCTGGCTGGAATCGTTGAAGAAGTTGGGGAGCAAG
TCTCTGGTTTCCAGAAGGGGGATGAAGTCGTTGCTACGTGGGACGTTTAT
GGTATCGGTGCTTTGGCAGAGCTGGCTGTCGTCCACGTCAAGTTTGTCTA
TCGAAAGCCGAAGAACCTCTCGTTCGTTGAGGCTGCTTCTGTCATCGACA
GTTCTTCGAACGCTCTACTCGCGCTTGAAGACGCCCAAGTGAAAAGCGGG
GATCGCGTCCTTGTACTTGGCGGGAGTGGCGGTGTTGGTACCTCCCTCCT
TCAGCTTCTTCGCAGAGCAAGCGTATCTCACATTGTAACTACCTCTACTG
ATAAAGAGCTTTGCTTACAACTCGGAGCAGATCACGTCGTCAACTATCGT
GAAGTTGATTGGTGGAAAGCGCCCGAAATCACAGAGCAGCCCTTTGACGT
TGTTATCGATTGCGCAGAAGGTGTTTCTGCCTGGAAGAAAGTACGAGAAC
TCAATCTGATCAAATCTGGGCCAGAAGGTGGCCGTTTCTTGGCCGTTGTT
GTGAATGATTGGCACATAGAAATTCATCACTGTTGGCAAATGCTATCCTG
GTTTATGCCGGTCGCCTTCAGGTTAGTTTCGAGCAGGTGCAATCGATCGT
CGCCATCGTACACTATGCTGTTTCCTGCACCTCGAGGAGACTCTAACCGT
CGCTTATTGGACATTGTTGAGGAGGGTGGGCTGAAAGTTGTCATAGATCC
GGAATCTCCCCACAAGTTCACCGCAGAGGGAGTTCGTGACGCGTTTGACA
AAATGATAGCAAGGAAGGGTCACGGAAAGGTGGTTATCTCGATTGTGGAT
GACAGATCTTCTAATTAG
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