Ggra9546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9546.t1
Unique Name	Ggra9546.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	494

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000150_pilon	contig	tig00000150_pilon:25553..27034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9546	Ggra9546	Gracilaria gracilis GNS1m male	gene	tig00000150_pilon 25553..27034 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9546.t1.start1	Ggra9546.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000150_pilon 25553..25555 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9546.t1.CDS1	Ggra9546.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000150_pilon 25553..27034 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9546.t1.exon1	Ggra9546.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000150_pilon 25553..27034 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9546.t1.stop1	Ggra9546.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000150_pilon 27032..27034 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9546.t1	Ggra9546.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000150_pilon 25553..27034 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000150_pilon:25553..27034+
coding sequence from alignment at tig00000150_pilon:25553..27034+

mRNA sequence

>Ggra9546.t1 ID=Ggra9546.t1|Name=Ggra9546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MFGSAQSAPSMFASSQAQPSSLFGGAPSQQQSSSSFLFSGAPPQSSAGSL
FGSAASSSSLFGVAASSSSLFGAAASSSSLFGAPASSSSLFGQPGAPSLF
ASPPAAQTQQAAAQQQQQIEITLRTRITELPPNFQNDLFAVERHLREQRN
KASLLWSKRGDVDAKLLQTKANSADISRLLIKLRAELDALEANATSLKAA
VRLERTSAQPVVTALENLSRRGYSGYLDQNGLPFMDTGGRVHAAHVPKEY
FTRIVEELEGRATEYKAEIDEIAAFLKAQGVMLSSGASGFGNGTNPSLLD
NLSQRYVDIGLSGTDTPSIPTGTIEDIIRRQYEYFMVVASHIAVAHENLR
AAREQFLQVLKERDTDAPNPFQQADMREKVEKDRQRLQSEKRAADGASQF
VNQINSLSQPSSAPGTFVPATGFGASSAAASSTTQASLFQSSATTSSLFG
APAGASAGSSSGGLFGGGFNFGGSSSASATDSEPNRATRRKRE*

spliced messenger RNA

>Ggra9546.t1 ID=Ggra9546.t1|Name=Ggra9546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000150_pilon:25553..27034+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGTTCGGCACAGTCCGCGCCGTCCATGTTTGCCAGTTCGCAAGC
GCAGCCTTCCTCTCTGTTCGGTGGAGCACCTTCGCAGCAGCAGTCCTCTT
CTTCGTTCTTGTTTAGTGGCGCCCCTCCGCAGTCTAGTGCGGGCTCTTTG
TTCGGCAGTGCTGCAAGCTCTTCGTCTCTTTTTGGCGTTGCCGCCAGTTC
GTCTTCCTTGTTTGGCGCCGCTGCAAGTTCGTCATCGTTATTCGGCGCAC
CCGCTAGTTCATCGTCGCTGTTTGGACAGCCTGGTGCCCCATCTCTTTTT
GCAAGTCCTCCCGCTGCACAAACGCAGCAGGCAGCCGCTCAGCAACAACA
GCAAATCGAAATCACTCTTCGCACGCGCATTACTGAACTGCCGCCGAACT
TCCAGAACGATCTGTTTGCCGTGGAGCGTCATCTTCGAGAGCAGAGGAAC
AAAGCGTCGCTTCTTTGGTCGAAGCGTGGCGATGTGGACGCAAAGCTGTT
GCAGACGAAGGCGAACAGCGCCGACATATCTAGGCTTTTGATAAAGCTCC
GCGCTGAATTAGACGCTCTTGAGGCGAATGCAACCTCGCTCAAGGCCGCC
GTGAGGCTGGAGCGTACTTCTGCGCAACCTGTCGTGACGGCGTTGGAGAA
CCTTTCGCGCAGGGGTTATTCTGGCTATCTGGATCAAAATGGTTTACCCT
TTATGGACACGGGGGGCAGAGTGCACGCCGCACATGTGCCAAAGGAATAC
TTTACGCGTATTGTCGAGGAATTGGAAGGTAGAGCTACAGAGTACAAGGC
CGAGATCGATGAAATCGCCGCGTTCTTGAAAGCGCAAGGCGTCATGCTGA
GCAGTGGAGCAAGTGGTTTTGGGAATGGAACGAACCCTAGTTTACTAGAC
AATCTGTCGCAGAGGTACGTCGACATCGGGCTCTCAGGTACTGACACCCC
GAGCATTCCCACCGGAACAATTGAGGATATTATCCGACGCCAGTATGAAT
ACTTCATGGTGGTAGCTAGTCACATTGCTGTGGCTCATGAGAACTTGCGT
GCCGCACGGGAACAGTTCTTGCAAGTTTTGAAGGAGCGCGACACAGACGC
ACCAAACCCCTTTCAGCAGGCGGACATGCGCGAAAAGGTGGAGAAAGATC
GGCAACGTCTTCAAAGTGAGAAACGGGCGGCCGATGGGGCGTCGCAGTTC
GTCAATCAGATCAACTCTCTAAGTCAACCGTCGTCAGCACCTGGAACTTT
TGTACCGGCTACAGGATTCGGGGCGTCCAGTGCTGCAGCATCATCAACGA
CGCAAGCATCGCTTTTCCAGTCGAGTGCAACAACAAGCTCGCTGTTCGGT
GCGCCTGCCGGCGCAAGCGCGGGTAGCTCGTCGGGGGGGCTTTTCGGAGG
TGGATTTAACTTTGGTGGTAGTTCCTCAGCTTCAGCAACAGACAGTGAGC
CAAATAGAGCCACAAGACGTAAAAGAGAGTAG

protein sequence of Ggra9546.t1

>Ggra9546.t1 ID=Ggra9546.t1|Name=Ggra9546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MFGSAQSAPSMFASSQAQPSSLFGGAPSQQQSSSSFLFSGAPPQSSAGSL
FGSAASSSSLFGVAASSSSLFGAAASSSSLFGAPASSSSLFGQPGAPSLF
ASPPAAQTQQAAAQQQQQIEITLRTRITELPPNFQNDLFAVERHLREQRN
KASLLWSKRGDVDAKLLQTKANSADISRLLIKLRAELDALEANATSLKAA
VRLERTSAQPVVTALENLSRRGYSGYLDQNGLPFMDTGGRVHAAHVPKEY
FTRIVEELEGRATEYKAEIDEIAAFLKAQGVMLSSGASGFGNGTNPSLLD
NLSQRYVDIGLSGTDTPSIPTGTIEDIIRRQYEYFMVVASHIAVAHENLR
AAREQFLQVLKERDTDAPNPFQQADMREKVEKDRQRLQSEKRAADGASQF
VNQINSLSQPSSAPGTFVPATGFGASSAAASSTTQASLFQSSATTSSLFG
APAGASAGSSSGGLFGGGFNFGGSSSASATDSEPNRATRRKRE*

mRNA from alignment at tig00000150_pilon:25553..27034+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9546.t1 ID=Ggra9546.t1|Name=Ggra9546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000150_pilon:25553..27034+ (Gracilaria gracilis GNS1m male)
ATGTTCGGTTCGGCACAGTCCGCGCCGTCCATGTTTGCCAGTTCGCAAGC
GCAGCCTTCCTCTCTGTTCGGTGGAGCACCTTCGCAGCAGCAGTCCTCTT
CTTCGTTCTTGTTTAGTGGCGCCCCTCCGCAGTCTAGTGCGGGCTCTTTG
TTCGGCAGTGCTGCAAGCTCTTCGTCTCTTTTTGGCGTTGCCGCCAGTTC
GTCTTCCTTGTTTGGCGCCGCTGCAAGTTCGTCATCGTTATTCGGCGCAC
CCGCTAGTTCATCGTCGCTGTTTGGACAGCCTGGTGCCCCATCTCTTTTT
GCAAGTCCTCCCGCTGCACAAACGCAGCAGGCAGCCGCTCAGCAACAACA
GCAAATCGAAATCACTCTTCGCACGCGCATTACTGAACTGCCGCCGAACT
TCCAGAACGATCTGTTTGCCGTGGAGCGTCATCTTCGAGAGCAGAGGAAC
AAAGCGTCGCTTCTTTGGTCGAAGCGTGGCGATGTGGACGCAAAGCTGTT
GCAGACGAAGGCGAACAGCGCCGACATATCTAGGCTTTTGATAAAGCTCC
GCGCTGAATTAGACGCTCTTGAGGCGAATGCAACCTCGCTCAAGGCCGCC
GTGAGGCTGGAGCGTACTTCTGCGCAACCTGTCGTGACGGCGTTGGAGAA
CCTTTCGCGCAGGGGTTATTCTGGCTATCTGGATCAAAATGGTTTACCCT
TTATGGACACGGGGGGCAGAGTGCACGCCGCACATGTGCCAAAGGAATAC
TTTACGCGTATTGTCGAGGAATTGGAAGGTAGAGCTACAGAGTACAAGGC
CGAGATCGATGAAATCGCCGCGTTCTTGAAAGCGCAAGGCGTCATGCTGA
GCAGTGGAGCAAGTGGTTTTGGGAATGGAACGAACCCTAGTTTACTAGAC
AATCTGTCGCAGAGGTACGTCGACATCGGGCTCTCAGGTACTGACACCCC
GAGCATTCCCACCGGAACAATTGAGGATATTATCCGACGCCAGTATGAAT
ACTTCATGGTGGTAGCTAGTCACATTGCTGTGGCTCATGAGAACTTGCGT
GCCGCACGGGAACAGTTCTTGCAAGTTTTGAAGGAGCGCGACACAGACGC
ACCAAACCCCTTTCAGCAGGCGGACATGCGCGAAAAGGTGGAGAAAGATC
GGCAACGTCTTCAAAGTGAGAAACGGGCGGCCGATGGGGCGTCGCAGTTC
GTCAATCAGATCAACTCTCTAAGTCAACCGTCGTCAGCACCTGGAACTTT
TGTACCGGCTACAGGATTCGGGGCGTCCAGTGCTGCAGCATCATCAACGA
CGCAAGCATCGCTTTTCCAGTCGAGTGCAACAACAAGCTCGCTGTTCGGT
GCGCCTGCCGGCGCAAGCGCGGGTAGCTCGTCGGGGGGGCTTTTCGGAGG
TGGATTTAACTTTGGTGGTAGTTCCTCAGCTTCAGCAACAGACAGTGAGC
CAAATAGAGCCACAAGACGTAAAAGAGAGTAG

Coding sequence (CDS) from alignment at tig00000150_pilon:25553..27034+

>Ggra9546.t1 ID=Ggra9546.t1|Name=Ggra9546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000150_pilon:25553..27034+ (Gracilaria gracilis GNS1m male)
ATGTTCGGTTCGGCACAGTCCGCGCCGTCCATGTTTGCCAGTTCGCAAGC
GCAGCCTTCCTCTCTGTTCGGTGGAGCACCTTCGCAGCAGCAGTCCTCTT
CTTCGTTCTTGTTTAGTGGCGCCCCTCCGCAGTCTAGTGCGGGCTCTTTG
TTCGGCAGTGCTGCAAGCTCTTCGTCTCTTTTTGGCGTTGCCGCCAGTTC
GTCTTCCTTGTTTGGCGCCGCTGCAAGTTCGTCATCGTTATTCGGCGCAC
CCGCTAGTTCATCGTCGCTGTTTGGACAGCCTGGTGCCCCATCTCTTTTT
GCAAGTCCTCCCGCTGCACAAACGCAGCAGGCAGCCGCTCAGCAACAACA
GCAAATCGAAATCACTCTTCGCACGCGCATTACTGAACTGCCGCCGAACT
TCCAGAACGATCTGTTTGCCGTGGAGCGTCATCTTCGAGAGCAGAGGAAC
AAAGCGTCGCTTCTTTGGTCGAAGCGTGGCGATGTGGACGCAAAGCTGTT
GCAGACGAAGGCGAACAGCGCCGACATATCTAGGCTTTTGATAAAGCTCC
GCGCTGAATTAGACGCTCTTGAGGCGAATGCAACCTCGCTCAAGGCCGCC
GTGAGGCTGGAGCGTACTTCTGCGCAACCTGTCGTGACGGCGTTGGAGAA
CCTTTCGCGCAGGGGTTATTCTGGCTATCTGGATCAAAATGGTTTACCCT
TTATGGACACGGGGGGCAGAGTGCACGCCGCACATGTGCCAAAGGAATAC
TTTACGCGTATTGTCGAGGAATTGGAAGGTAGAGCTACAGAGTACAAGGC
CGAGATCGATGAAATCGCCGCGTTCTTGAAAGCGCAAGGCGTCATGCTGA
GCAGTGGAGCAAGTGGTTTTGGGAATGGAACGAACCCTAGTTTACTAGAC
AATCTGTCGCAGAGGTACGTCGACATCGGGCTCTCAGGTACTGACACCCC
GAGCATTCCCACCGGAACAATTGAGGATATTATCCGACGCCAGTATGAAT
ACTTCATGGTGGTAGCTAGTCACATTGCTGTGGCTCATGAGAACTTGCGT
GCCGCACGGGAACAGTTCTTGCAAGTTTTGAAGGAGCGCGACACAGACGC
ACCAAACCCCTTTCAGCAGGCGGACATGCGCGAAAAGGTGGAGAAAGATC
GGCAACGTCTTCAAAGTGAGAAACGGGCGGCCGATGGGGCGTCGCAGTTC
GTCAATCAGATCAACTCTCTAAGTCAACCGTCGTCAGCACCTGGAACTTT
TGTACCGGCTACAGGATTCGGGGCGTCCAGTGCTGCAGCATCATCAACGA
CGCAAGCATCGCTTTTCCAGTCGAGTGCAACAACAAGCTCGCTGTTCGGT
GCGCCTGCCGGCGCAAGCGCGGGTAGCTCGTCGGGGGGGCTTTTCGGAGG
TGGATTTAACTTTGGTGGTAGTTCCTCAGCTTCAGCAACAGACAGTGAGC
CAAATAGAGCCACAAGACGTAAAAGAGAGTAG