Ggra8731.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8731.t1
Unique NameGgra8731.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:5787..6191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706811.1
PFAMsJAB,PRO8NT,PROCN,PROCT,PRP8_domainIV,RRM_4,U5_2-snRNA_bdg,U6-snRNA_bdg
Max annot lvl2759|Eukaryota
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue2.26e-64
EggNOG OGsCOG5178@1|root,KOG1795@2759|Eukaryota
DescriptionU5 snRNA binding
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8731Ggra8731Gracilaria gracilis GNS1m malegenetig00000127_pilon 5787..6191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8731.t1.stop1Ggra8731.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 5787..5789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8731.t1.CDS1Ggra8731.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 5787..6191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8731.t1.exon1Ggra8731.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 5787..6191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8731.t1.start1Ggra8731.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 6189..6191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8731.t1Ggra8731.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 5787..6191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8731.t1 ID=Ggra8731.t1|Name=Ggra8731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=135bp
MPNEWLGFESNGTEIAHPIRMYCRYVDKGYMVLGFDMEESKELVQGYLTE
HPEPNNENIVGYPNKKCWPRQARMRLMKHDVNLGRALFWDIKNRVPRSVT
TSNWDDSATFVSVYSKDNPNLLFDMVGFEVRVLP*
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spliced messenger RNA

>Ggra8731.t1 ID=Ggra8731.t1|Name=Ggra8731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000127_pilon:5787..6191- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAATGAATGGTTAGGCTTTGAAAGTAATGGCACGGAGATTGCTCA
TCCCATTCGCATGTACTGTCGTTATGTAGACAAGGGTTACATGGTTCTGG
GATTTGACATGGAAGAGTCCAAGGAATTAGTGCAGGGATATTTGACGGAG
CATCCTGAGCCGAACAATGAAAATATAGTAGGATATCCGAATAAGAAGTG
TTGGCCACGACAAGCGAGAATGCGACTGATGAAGCATGATGTAAACCTTG
GAAGAGCTCTATTCTGGGACATTAAGAATCGTGTTCCTCGCTCAGTCACG
ACGTCGAACTGGGACGATTCGGCAACTTTTGTGTCTGTGTATTCTAAGGA
CAACCCGAACCTTCTCTTTGACATGGTTGGGTTTGAAGTGAGAGTTCTGC
CTTGA
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protein sequence of Ggra8731.t1

>Ggra8731.t1 ID=Ggra8731.t1|Name=Ggra8731.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=135bp
MPNEWLGFESNGTEIAHPIRMYCRYVDKGYMVLGFDMEESKELVQGYLTE
HPEPNNENIVGYPNKKCWPRQARMRLMKHDVNLGRALFWDIKNRVPRSVT
TSNWDDSATFVSVYSKDNPNLLFDMVGFEVRVLP*
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mRNA from alignment at tig00000127_pilon:5787..6191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8731.t1 ID=Ggra8731.t1|Name=Ggra8731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000127_pilon:5787..6191- (Gracilaria gracilis GNS1m male)
ATGCCCAATGAATGGTTAGGCTTTGAAAGTAATGGCACGGAGATTGCTCA
TCCCATTCGCATGTACTGTCGTTATGTAGACAAGGGTTACATGGTTCTGG
GATTTGACATGGAAGAGTCCAAGGAATTAGTGCAGGGATATTTGACGGAG
CATCCTGAGCCGAACAATGAAAATATAGTAGGATATCCGAATAAGAAGTG
TTGGCCACGACAAGCGAGAATGCGACTGATGAAGCATGATGTAAACCTTG
GAAGAGCTCTATTCTGGGACATTAAGAATCGTGTTCCTCGCTCAGTCACG
ACGTCGAACTGGGACGATTCGGCAACTTTTGTGTCTGTGTATTCTAAGGA
CAACCCGAACCTTCTCTTTGACATGGTTGGGTTTGAAGTGAGAGTTCTGC
CTTGA
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Coding sequence (CDS) from alignment at tig00000127_pilon:5787..6191-

>Ggra8731.t1 ID=Ggra8731.t1|Name=Ggra8731.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00000127_pilon:5787..6191- (Gracilaria gracilis GNS1m male)
ATGCCCAATGAATGGTTAGGCTTTGAAAGTAATGGCACGGAGATTGCTCA
TCCCATTCGCATGTACTGTCGTTATGTAGACAAGGGTTACATGGTTCTGG
GATTTGACATGGAAGAGTCCAAGGAATTAGTGCAGGGATATTTGACGGAG
CATCCTGAGCCGAACAATGAAAATATAGTAGGATATCCGAATAAGAAGTG
TTGGCCACGACAAGCGAGAATGCGACTGATGAAGCATGATGTAAACCTTG
GAAGAGCTCTATTCTGGGACATTAAGAATCGTGTTCCTCGCTCAGTCACG
ACGTCGAACTGGGACGATTCGGCAACTTTTGTGTCTGTGTATTCTAAGGA
CAACCCGAACCTTCTCTTTGACATGGTTGGGTTTGAAGTGAGAGTTCTGC
CTTGA
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