Ggra10851.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10851.t1
Unique NameGgra10851.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:139055..139567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704542.1
Preferred nameSLC25A37
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01893,ko:K15113,ko:K17907
KEGG TC2.A.29.5,9.A.15.1
KEGG ReactionR03648
KEGG Pathwayko00970,ko04136,ko04137,ko04138,ko04140,map00970,map04136,map04137,map04138,map04140
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000041,GO:0002262,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008324,GO:0008380,GO:0009790,GO:0009987,GO:0010467,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0016070,GO:0019866,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022857,GO:0022890,GO:0030001,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0034101,GO:0034220,GO:0034641,GO:0034755,GO:0035162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043249,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0046873,GO:0046915,GO:0048232,GO:0048250,GO:0048468,GO:0048469,GO:0048513,GO:0048515,GO:0048534,GO:0048568,GO:0048609,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051704,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055085,GO:0060586,GO:0061515,GO:0065007,GO:0065008,GO:0070838,GO:0071695,GO:0071704,GO:0072509,GO:0072511,GO:0090304,GO:0097286,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:1901360,GO:1903874,GO:1990542
Evalue3.1e-48
EggNOG OGsKOG0760@1|root,KOG0760@2759|Eukaryota
EC6.1.1.22
Descriptioniron import into the mitochondrion
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02000,ko03016,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10851Ggra10851Gracilaria gracilis GNS1m malegenetig00000125_pilon 139055..139567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10851.t1.stop1Ggra10851.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 139055..139057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10851.t1.CDS1Ggra10851.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 139055..139567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10851.t1.exon1Ggra10851.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 139055..139567 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10851.t1.start1Ggra10851.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 139565..139567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10851.t1Ggra10851.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 139055..139567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10851.t1 ID=Ggra10851.t1|Name=Ggra10851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=171bp
MAPLDVVKQRMQLSGRQTYGSVLQCVRHVYELHGVRAFYAGYGATLLMNV
PFTAAYFGSYESAKHALLRLHQRDETAFDVRAHCVAGGVAGGVAAAGTNP
LDVVKTRLQTQGEVGARRYRGLYEALRTIAREEGASGLMRGVKARVLFHV
PAAAICWTTYEFCKHLMATQ*
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spliced messenger RNA

>Ggra10851.t1 ID=Ggra10851.t1|Name=Ggra10851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000125_pilon:139055..139567- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCTGGACGTGGTGAAGCAGCGCATGCAGCTGAGCGGGCGGCA
GACGTACGGCAGCGTGCTGCAGTGCGTGCGGCATGTGTACGAGTTGCACG
GTGTGCGCGCGTTCTACGCGGGGTACGGCGCCACGCTGCTGATGAACGTG
CCGTTCACGGCGGCGTACTTTGGCAGCTACGAGAGCGCCAAGCACGCGCT
GCTACGGCTGCACCAGCGCGACGAGACGGCGTTCGACGTGCGCGCGCACT
GCGTGGCGGGCGGCGTGGCGGGCGGCGTGGCGGCGGCCGGCACCAACCCG
CTGGACGTGGTGAAGACGCGGCTGCAGACGCAGGGCGAGGTAGGCGCGCG
TCGCTACCGCGGGCTGTACGAGGCGCTGCGTACGATCGCGCGCGAGGAGG
GCGCCAGCGGGCTCATGAGGGGCGTCAAGGCGCGCGTGCTGTTCCACGTG
CCCGCGGCGGCCATTTGCTGGACCACTTATGAATTCTGCAAGCACCTCAT
GGCCACGCAGTGA
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protein sequence of Ggra10851.t1

>Ggra10851.t1 ID=Ggra10851.t1|Name=Ggra10851.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=171bp
MAPLDVVKQRMQLSGRQTYGSVLQCVRHVYELHGVRAFYAGYGATLLMNV
PFTAAYFGSYESAKHALLRLHQRDETAFDVRAHCVAGGVAGGVAAAGTNP
LDVVKTRLQTQGEVGARRYRGLYEALRTIAREEGASGLMRGVKARVLFHV
PAAAICWTTYEFCKHLMATQ*
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mRNA from alignment at tig00000125_pilon:139055..139567-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10851.t1 ID=Ggra10851.t1|Name=Ggra10851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000125_pilon:139055..139567- (Gracilaria gracilis GNS1m male)
ATGGCGCCTCTGGACGTGGTGAAGCAGCGCATGCAGCTGAGCGGGCGGCA
GACGTACGGCAGCGTGCTGCAGTGCGTGCGGCATGTGTACGAGTTGCACG
GTGTGCGCGCGTTCTACGCGGGGTACGGCGCCACGCTGCTGATGAACGTG
CCGTTCACGGCGGCGTACTTTGGCAGCTACGAGAGCGCCAAGCACGCGCT
GCTACGGCTGCACCAGCGCGACGAGACGGCGTTCGACGTGCGCGCGCACT
GCGTGGCGGGCGGCGTGGCGGGCGGCGTGGCGGCGGCCGGCACCAACCCG
CTGGACGTGGTGAAGACGCGGCTGCAGACGCAGGGCGAGGTAGGCGCGCG
TCGCTACCGCGGGCTGTACGAGGCGCTGCGTACGATCGCGCGCGAGGAGG
GCGCCAGCGGGCTCATGAGGGGCGTCAAGGCGCGCGTGCTGTTCCACGTG
CCCGCGGCGGCCATTTGCTGGACCACTTATGAATTCTGCAAGCACCTCAT
GGCCACGCAGTGA
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Coding sequence (CDS) from alignment at tig00000125_pilon:139055..139567-

>Ggra10851.t1 ID=Ggra10851.t1|Name=Ggra10851.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00000125_pilon:139055..139567- (Gracilaria gracilis GNS1m male)
ATGGCGCCTCTGGACGTGGTGAAGCAGCGCATGCAGCTGAGCGGGCGGCA
GACGTACGGCAGCGTGCTGCAGTGCGTGCGGCATGTGTACGAGTTGCACG
GTGTGCGCGCGTTCTACGCGGGGTACGGCGCCACGCTGCTGATGAACGTG
CCGTTCACGGCGGCGTACTTTGGCAGCTACGAGAGCGCCAAGCACGCGCT
GCTACGGCTGCACCAGCGCGACGAGACGGCGTTCGACGTGCGCGCGCACT
GCGTGGCGGGCGGCGTGGCGGGCGGCGTGGCGGCGGCCGGCACCAACCCG
CTGGACGTGGTGAAGACGCGGCTGCAGACGCAGGGCGAGGTAGGCGCGCG
TCGCTACCGCGGGCTGTACGAGGCGCTGCGTACGATCGCGCGCGAGGAGG
GCGCCAGCGGGCTCATGAGGGGCGTCAAGGCGCGCGTGCTGTTCCACGTG
CCCGCGGCGGCCATTTGCTGGACCACTTATGAATTCTGCAAGCACCTCAT
GGCCACGCAGTGA
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