Ggra10867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10867.t1
Unique Name	Ggra10867.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	461

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000125_pilon	contig	tig00000125_pilon:238572..239954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10867	Ggra10867	Gracilaria gracilis GNS1m male	gene	tig00000125_pilon 238572..239954 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10867.t1.start1	Ggra10867.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000125_pilon 238572..238574 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10867.t1.CDS1	Ggra10867.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000125_pilon 238572..239954 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10867.t1.exon1	Ggra10867.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000125_pilon 238572..239954 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10867.t1.stop1	Ggra10867.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000125_pilon 239952..239954 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10867.t1	Ggra10867.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000125_pilon 238572..239954 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000125_pilon:238572..239954+
coding sequence from alignment at tig00000125_pilon:238572..239954+

mRNA sequence

>Ggra10867.t1 ID=Ggra10867.t1|Name=Ggra10867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=461bp
MIRNNKLSYSSVDRPWHAFEVPHTSLSSLVTSVLVTVISYQVASILLSFT
LGLKKRNETKLKNYGIALLTRYLSSPLAVMNSIFRMDWLTRLYYYGDIPS
DTRISRDPARVKFRTTAALLLLLVATPIFDTLLVALNLSRTSDLTFEEAG
FRGVQLGVHQELNVVETIPYLSLCRSAKFEERSGDLVRAVFQLCDTPMLA
EEEAPSVSGLDISLERQSHVYVKVIFQGSVKFGAKWTQLSGVGKEKNMKA
SITNNSVLPLVDVALDRFAVYCGGRTVIDGMRAQQNRESGANNMPIASVR
VACNDTIMAKQERLMYATELLEMVRTKLTFVESERTLVRDVTDLTGEFVE
ESDGVLLQRTERNSSTFTLIAVCVALVLVRATVGMFLANDVEAGLEWLLL
NRLGFAVGSTTVWSSAERIRFRNKYQDGDSCQLGMEREDLTEVESFHGGV
VGKGVMSAGA*

spliced messenger RNA

>Ggra10867.t1 ID=Ggra10867.t1|Name=Ggra10867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000125_pilon:238572..239954+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGGAATAACAAGCTATCCTATTCCTCTGTTGACCGTCCATGGCA
CGCCTTTGAGGTTCCGCATACATCCCTCAGTTCGCTGGTAACATCTGTTC
TCGTTACGGTGATCTCATACCAAGTTGCGTCAATCCTGCTCAGCTTCACT
CTTGGATTGAAGAAACGGAACGAGACCAAACTGAAGAACTATGGAATTGC
ACTTCTTACTAGGTACCTATCCTCCCCACTCGCTGTCATGAACAGTATTT
TCCGGATGGACTGGCTGACTCGTCTCTACTACTATGGTGACATTCCCTCC
GATACCCGCATATCACGTGATCCAGCACGGGTGAAGTTTAGAACAACTGC
AGCTCTATTGCTCCTTTTGGTGGCCACCCCGATCTTTGATACATTGCTCG
TGGCTCTAAACTTGTCCAGAACAAGTGACTTGACGTTCGAGGAGGCTGGG
TTTCGAGGTGTTCAGTTAGGTGTACATCAAGAATTGAACGTTGTCGAGAC
GATTCCGTACCTTTCATTATGCCGTTCGGCGAAGTTTGAGGAGAGAAGTG
GAGATTTGGTTAGAGCTGTCTTTCAGCTGTGTGATACACCGATGTTAGCC
GAGGAAGAGGCGCCAAGTGTTTCTGGCCTTGACATATCGCTCGAACGTCA
GTCTCATGTGTATGTAAAGGTGATATTTCAGGGCTCCGTCAAATTTGGCG
CCAAATGGACTCAGCTTAGTGGGGTAGGTAAAGAGAAGAATATGAAGGCG
TCTATTACAAACAACTCCGTATTGCCTCTGGTAGACGTTGCTCTTGACAG
GTTTGCAGTATACTGCGGGGGACGAACCGTAATCGACGGTATGCGAGCTC
AACAAAATCGTGAATCTGGCGCGAACAATATGCCAATTGCCTCTGTTCGC
GTCGCTTGCAATGACACAATAATGGCGAAGCAGGAAAGACTGATGTATGC
TACTGAACTTCTTGAAATGGTGAGAACGAAACTCACGTTCGTTGAATCAG
AAAGGACGCTCGTTCGAGACGTAACGGATCTGACGGGTGAGTTTGTAGAA
GAAAGCGATGGCGTGTTGCTTCAGAGGACAGAGCGAAACTCTTCAACGTT
CACATTGATAGCAGTGTGTGTTGCTCTTGTGCTGGTTCGAGCGACAGTAG
GGATGTTTCTTGCCAATGACGTTGAAGCTGGACTTGAATGGCTTCTTCTG
AATCGGTTAGGTTTTGCAGTAGGTAGCACTACAGTCTGGAGTTCCGCAGA
GCGAATACGTTTCCGAAACAAGTATCAAGATGGCGATTCATGTCAGCTGG
GCATGGAGCGAGAAGATCTGACGGAAGTTGAGAGCTTTCATGGTGGTGTT
GTCGGAAAAGGAGTGATGTCCGCAGGAGCATAA

protein sequence of Ggra10867.t1

>Ggra10867.t1 ID=Ggra10867.t1|Name=Ggra10867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=461bp
MIRNNKLSYSSVDRPWHAFEVPHTSLSSLVTSVLVTVISYQVASILLSFT
LGLKKRNETKLKNYGIALLTRYLSSPLAVMNSIFRMDWLTRLYYYGDIPS
DTRISRDPARVKFRTTAALLLLLVATPIFDTLLVALNLSRTSDLTFEEAG
FRGVQLGVHQELNVVETIPYLSLCRSAKFEERSGDLVRAVFQLCDTPMLA
EEEAPSVSGLDISLERQSHVYVKVIFQGSVKFGAKWTQLSGVGKEKNMKA
SITNNSVLPLVDVALDRFAVYCGGRTVIDGMRAQQNRESGANNMPIASVR
VACNDTIMAKQERLMYATELLEMVRTKLTFVESERTLVRDVTDLTGEFVE
ESDGVLLQRTERNSSTFTLIAVCVALVLVRATVGMFLANDVEAGLEWLLL
NRLGFAVGSTTVWSSAERIRFRNKYQDGDSCQLGMEREDLTEVESFHGGV
VGKGVMSAGA*

mRNA from alignment at tig00000125_pilon:238572..239954+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10867.t1 ID=Ggra10867.t1|Name=Ggra10867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000125_pilon:238572..239954+ (Gracilaria gracilis GNS1m male)
ATGATACGGAATAACAAGCTATCCTATTCCTCTGTTGACCGTCCATGGCA
CGCCTTTGAGGTTCCGCATACATCCCTCAGTTCGCTGGTAACATCTGTTC
TCGTTACGGTGATCTCATACCAAGTTGCGTCAATCCTGCTCAGCTTCACT
CTTGGATTGAAGAAACGGAACGAGACCAAACTGAAGAACTATGGAATTGC
ACTTCTTACTAGGTACCTATCCTCCCCACTCGCTGTCATGAACAGTATTT
TCCGGATGGACTGGCTGACTCGTCTCTACTACTATGGTGACATTCCCTCC
GATACCCGCATATCACGTGATCCAGCACGGGTGAAGTTTAGAACAACTGC
AGCTCTATTGCTCCTTTTGGTGGCCACCCCGATCTTTGATACATTGCTCG
TGGCTCTAAACTTGTCCAGAACAAGTGACTTGACGTTCGAGGAGGCTGGG
TTTCGAGGTGTTCAGTTAGGTGTACATCAAGAATTGAACGTTGTCGAGAC
GATTCCGTACCTTTCATTATGCCGTTCGGCGAAGTTTGAGGAGAGAAGTG
GAGATTTGGTTAGAGCTGTCTTTCAGCTGTGTGATACACCGATGTTAGCC
GAGGAAGAGGCGCCAAGTGTTTCTGGCCTTGACATATCGCTCGAACGTCA
GTCTCATGTGTATGTAAAGGTGATATTTCAGGGCTCCGTCAAATTTGGCG
CCAAATGGACTCAGCTTAGTGGGGTAGGTAAAGAGAAGAATATGAAGGCG
TCTATTACAAACAACTCCGTATTGCCTCTGGTAGACGTTGCTCTTGACAG
GTTTGCAGTATACTGCGGGGGACGAACCGTAATCGACGGTATGCGAGCTC
AACAAAATCGTGAATCTGGCGCGAACAATATGCCAATTGCCTCTGTTCGC
GTCGCTTGCAATGACACAATAATGGCGAAGCAGGAAAGACTGATGTATGC
TACTGAACTTCTTGAAATGGTGAGAACGAAACTCACGTTCGTTGAATCAG
AAAGGACGCTCGTTCGAGACGTAACGGATCTGACGGGTGAGTTTGTAGAA
GAAAGCGATGGCGTGTTGCTTCAGAGGACAGAGCGAAACTCTTCAACGTT
CACATTGATAGCAGTGTGTGTTGCTCTTGTGCTGGTTCGAGCGACAGTAG
GGATGTTTCTTGCCAATGACGTTGAAGCTGGACTTGAATGGCTTCTTCTG
AATCGGTTAGGTTTTGCAGTAGGTAGCACTACAGTCTGGAGTTCCGCAGA
GCGAATACGTTTCCGAAACAAGTATCAAGATGGCGATTCATGTCAGCTGG
GCATGGAGCGAGAAGATCTGACGGAAGTTGAGAGCTTTCATGGTGGTGTT
GTCGGAAAAGGAGTGATGTCCGCAGGAGCATAA

Coding sequence (CDS) from alignment at tig00000125_pilon:238572..239954+

>Ggra10867.t1 ID=Ggra10867.t1|Name=Ggra10867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1383bp|location=Sequence derived from alignment at tig00000125_pilon:238572..239954+ (Gracilaria gracilis GNS1m male)
ATGATACGGAATAACAAGCTATCCTATTCCTCTGTTGACCGTCCATGGCA
CGCCTTTGAGGTTCCGCATACATCCCTCAGTTCGCTGGTAACATCTGTTC
TCGTTACGGTGATCTCATACCAAGTTGCGTCAATCCTGCTCAGCTTCACT
CTTGGATTGAAGAAACGGAACGAGACCAAACTGAAGAACTATGGAATTGC
ACTTCTTACTAGGTACCTATCCTCCCCACTCGCTGTCATGAACAGTATTT
TCCGGATGGACTGGCTGACTCGTCTCTACTACTATGGTGACATTCCCTCC
GATACCCGCATATCACGTGATCCAGCACGGGTGAAGTTTAGAACAACTGC
AGCTCTATTGCTCCTTTTGGTGGCCACCCCGATCTTTGATACATTGCTCG
TGGCTCTAAACTTGTCCAGAACAAGTGACTTGACGTTCGAGGAGGCTGGG
TTTCGAGGTGTTCAGTTAGGTGTACATCAAGAATTGAACGTTGTCGAGAC
GATTCCGTACCTTTCATTATGCCGTTCGGCGAAGTTTGAGGAGAGAAGTG
GAGATTTGGTTAGAGCTGTCTTTCAGCTGTGTGATACACCGATGTTAGCC
GAGGAAGAGGCGCCAAGTGTTTCTGGCCTTGACATATCGCTCGAACGTCA
GTCTCATGTGTATGTAAAGGTGATATTTCAGGGCTCCGTCAAATTTGGCG
CCAAATGGACTCAGCTTAGTGGGGTAGGTAAAGAGAAGAATATGAAGGCG
TCTATTACAAACAACTCCGTATTGCCTCTGGTAGACGTTGCTCTTGACAG
GTTTGCAGTATACTGCGGGGGACGAACCGTAATCGACGGTATGCGAGCTC
AACAAAATCGTGAATCTGGCGCGAACAATATGCCAATTGCCTCTGTTCGC
GTCGCTTGCAATGACACAATAATGGCGAAGCAGGAAAGACTGATGTATGC
TACTGAACTTCTTGAAATGGTGAGAACGAAACTCACGTTCGTTGAATCAG
AAAGGACGCTCGTTCGAGACGTAACGGATCTGACGGGTGAGTTTGTAGAA
GAAAGCGATGGCGTGTTGCTTCAGAGGACAGAGCGAAACTCTTCAACGTT
CACATTGATAGCAGTGTGTGTTGCTCTTGTGCTGGTTCGAGCGACAGTAG
GGATGTTTCTTGCCAATGACGTTGAAGCTGGACTTGAATGGCTTCTTCTG
AATCGGTTAGGTTTTGCAGTAGGTAGCACTACAGTCTGGAGTTCCGCAGA
GCGAATACGTTTCCGAAACAAGTATCAAGATGGCGATTCATGTCAGCTGG
GCATGGAGCGAGAAGATCTGACGGAAGTTGAGAGCTTTCATGGTGGTGTT
GTCGGAAAAGGAGTGATGTCCGCAGGAGCATAA