Ggra4683.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4683.t1
Unique NameGgra4683.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:79372..80196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA15G14130.2
PFAMsMethyltransf_28
Max annot lvl35493|Streptophyta
Evalue2.14e-19
EggNOG OGs2CMRH@1|root,2QRKD@2759|Eukaryota,37HTZ@33090|Viridiplantae,3G86H@35493|Streptophyta,4JE5G@91835|fabids
DescriptionArginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4683Ggra4683Gracilaria gracilis GNS1m malegenetig00000124_pilon 79372..80196 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4683.t1.stop1Ggra4683.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 79372..79374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4683.t1.CDS1Ggra4683.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 79372..80196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4683.t1.exon1Ggra4683.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 79372..80196 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4683.t1.start1Ggra4683.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 80194..80196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4683.t1Ggra4683.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 79372..80196 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4683.t1 ID=Ggra4683.t1|Name=Ggra4683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=275bp
MTKNNLTQTRLRSPRTDETESTELRSTQLDTKKNVLRFCVRLQIEGHCHV
IATEVLDNMPHDLVRDGEMLEQAEVVSIENGHRHMQWSECTDQQILSTIE
TYGILENTPAQTWRTAMQERFEIAIGGGSRNIWVPTASFLLLKTLVAALP
RAHLTLADFDSFPGAMPGLNAPVVQSVRGGAAVVYDDVHSSPFGNVDIMF
PTDFQALARGLASFFRKEEDFSGVVMKQRDFFEEYATKQEIDRSTCQDGY
NPILYDFENVSYLLVDHAKTTNRD*
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spliced messenger RNA

>Ggra4683.t1 ID=Ggra4683.t1|Name=Ggra4683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000124_pilon:79372..80196- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGAACAATTTAACGCAGACACGTTTACGCTCTCCAAGAACGGA
CGAAACAGAATCTACCGAACTGCGCTCAACACAATTGGACACGAAGAAAA
ACGTTTTGCGCTTTTGCGTACGTCTGCAGATTGAAGGTCATTGTCACGTA
ATCGCCACTGAAGTGCTGGACAATATGCCACACGATCTTGTGCGTGACGG
AGAAATGCTCGAGCAAGCTGAAGTAGTTTCCATCGAAAACGGACATCGGC
ATATGCAGTGGTCCGAATGTACTGACCAACAGATCTTGTCCACCATTGAG
ACATACGGGATACTGGAAAACACCCCGGCGCAAACTTGGAGAACTGCAAT
GCAAGAGCGATTTGAAATTGCAATCGGCGGTGGAAGCCGTAACATATGGG
TTCCGACGGCCTCGTTCTTGTTGTTAAAGACCCTCGTAGCAGCGCTACCT
CGCGCTCACTTGACACTAGCCGACTTTGACAGTTTTCCAGGAGCTATGCC
AGGGCTTAACGCCCCAGTCGTGCAGAGTGTACGCGGAGGGGCTGCGGTTG
TGTACGATGATGTTCATTCCTCCCCATTTGGGAACGTTGATATAATGTTT
CCTACTGATTTCCAAGCGCTCGCACGCGGTCTCGCATCTTTCTTCAGAAA
AGAAGAAGACTTCTCAGGGGTTGTCATGAAACAGCGAGATTTCTTTGAGG
AGTACGCTACCAAGCAAGAGATAGACAGGAGTACGTGCCAAGATGGATAC
AACCCAATCCTGTACGACTTTGAAAATGTGTCTTACTTATTGGTGGACCA
TGCTAAAACCACAAACCGTGATTGA
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protein sequence of Ggra4683.t1

>Ggra4683.t1 ID=Ggra4683.t1|Name=Ggra4683.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MTKNNLTQTRLRSPRTDETESTELRSTQLDTKKNVLRFCVRLQIEGHCHV
IATEVLDNMPHDLVRDGEMLEQAEVVSIENGHRHMQWSECTDQQILSTIE
TYGILENTPAQTWRTAMQERFEIAIGGGSRNIWVPTASFLLLKTLVAALP
RAHLTLADFDSFPGAMPGLNAPVVQSVRGGAAVVYDDVHSSPFGNVDIMF
PTDFQALARGLASFFRKEEDFSGVVMKQRDFFEEYATKQEIDRSTCQDGY
NPILYDFENVSYLLVDHAKTTNRD*
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mRNA from alignment at tig00000124_pilon:79372..80196-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4683.t1 ID=Ggra4683.t1|Name=Ggra4683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000124_pilon:79372..80196- (Gracilaria gracilis GNS1m male)
ATGACAAAGAACAATTTAACGCAGACACGTTTACGCTCTCCAAGAACGGA
CGAAACAGAATCTACCGAACTGCGCTCAACACAATTGGACACGAAGAAAA
ACGTTTTGCGCTTTTGCGTACGTCTGCAGATTGAAGGTCATTGTCACGTA
ATCGCCACTGAAGTGCTGGACAATATGCCACACGATCTTGTGCGTGACGG
AGAAATGCTCGAGCAAGCTGAAGTAGTTTCCATCGAAAACGGACATCGGC
ATATGCAGTGGTCCGAATGTACTGACCAACAGATCTTGTCCACCATTGAG
ACATACGGGATACTGGAAAACACCCCGGCGCAAACTTGGAGAACTGCAAT
GCAAGAGCGATTTGAAATTGCAATCGGCGGTGGAAGCCGTAACATATGGG
TTCCGACGGCCTCGTTCTTGTTGTTAAAGACCCTCGTAGCAGCGCTACCT
CGCGCTCACTTGACACTAGCCGACTTTGACAGTTTTCCAGGAGCTATGCC
AGGGCTTAACGCCCCAGTCGTGCAGAGTGTACGCGGAGGGGCTGCGGTTG
TGTACGATGATGTTCATTCCTCCCCATTTGGGAACGTTGATATAATGTTT
CCTACTGATTTCCAAGCGCTCGCACGCGGTCTCGCATCTTTCTTCAGAAA
AGAAGAAGACTTCTCAGGGGTTGTCATGAAACAGCGAGATTTCTTTGAGG
AGTACGCTACCAAGCAAGAGATAGACAGGAGTACGTGCCAAGATGGATAC
AACCCAATCCTGTACGACTTTGAAAATGTGTCTTACTTATTGGTGGACCA
TGCTAAAACCACAAACCGTGATTGA
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Coding sequence (CDS) from alignment at tig00000124_pilon:79372..80196-

>Ggra4683.t1 ID=Ggra4683.t1|Name=Ggra4683.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000124_pilon:79372..80196- (Gracilaria gracilis GNS1m male)
ATGACAAAGAACAATTTAACGCAGACACGTTTACGCTCTCCAAGAACGGA
CGAAACAGAATCTACCGAACTGCGCTCAACACAATTGGACACGAAGAAAA
ACGTTTTGCGCTTTTGCGTACGTCTGCAGATTGAAGGTCATTGTCACGTA
ATCGCCACTGAAGTGCTGGACAATATGCCACACGATCTTGTGCGTGACGG
AGAAATGCTCGAGCAAGCTGAAGTAGTTTCCATCGAAAACGGACATCGGC
ATATGCAGTGGTCCGAATGTACTGACCAACAGATCTTGTCCACCATTGAG
ACATACGGGATACTGGAAAACACCCCGGCGCAAACTTGGAGAACTGCAAT
GCAAGAGCGATTTGAAATTGCAATCGGCGGTGGAAGCCGTAACATATGGG
TTCCGACGGCCTCGTTCTTGTTGTTAAAGACCCTCGTAGCAGCGCTACCT
CGCGCTCACTTGACACTAGCCGACTTTGACAGTTTTCCAGGAGCTATGCC
AGGGCTTAACGCCCCAGTCGTGCAGAGTGTACGCGGAGGGGCTGCGGTTG
TGTACGATGATGTTCATTCCTCCCCATTTGGGAACGTTGATATAATGTTT
CCTACTGATTTCCAAGCGCTCGCACGCGGTCTCGCATCTTTCTTCAGAAA
AGAAGAAGACTTCTCAGGGGTTGTCATGAAACAGCGAGATTTCTTTGAGG
AGTACGCTACCAAGCAAGAGATAGACAGGAGTACGTGCCAAGATGGATAC
AACCCAATCCTGTACGACTTTGAAAATGTGTCTTACTTATTGGTGGACCA
TGCTAAAACCACAAACCGTGATTGA
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