Ggra2832.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2832.t1
Unique NameGgra2832.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:410422..411279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006474316.1
Max annot lvl35493|Streptophyta
KEGG koko:K15082
Evalue3.81e-05
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota,37QPY@33090|Viridiplantae,3GG9G@35493|Streptophyta
DescriptionLeucine-rich repeats, outliers
COG categoryL
BRITEko00000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2832Ggra2832Gracilaria gracilis GNS1m malegenetig00000123_pilon 410422..411948 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2832.t1.stop1Ggra2832.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 410422..410424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2832.t1.CDS1Ggra2832.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 410422..411279 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2832.t1.exon1Ggra2832.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 410422..411279 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2832.t1.start1Ggra2832.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 411277..411279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2832.t1Ggra2832.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 410422..411279 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2832.t1 ID=Ggra2832.t1|Name=Ggra2832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MHLADCGVTDDALVAIATSCHALHELNLCCCSGVSTWGVRAIAEGLGSFL
QRLSIVHCEQVDDEAFVSIADNCDELRMLSIGSLPNVTDEALLALFDVAR
LGALQLSVLYVENCPAVSQLGIAAASGVLDGGDLHAQQWYGDRAQCGEEE
CGREVDDSDEDECGREVDDSDEDELVWGCEGTHAKVKTKSGASAKRKRGR
PVDSDPHVQERRFESRLCELYAPDTTVRTEVLRRVKERRGGTLTVRVREE
GDASRDDGSEEEEEEDNGEGGCEWSWCCGAVQVCV*
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spliced messenger RNA

>Ggra2832.t1 ID=Ggra2832.t1|Name=Ggra2832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000123_pilon:410422..411279- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTGGCGGATTGCGGCGTGACGGACGATGCGCTGGTGGCGATTGC
CACCAGCTGTCATGCGTTGCATGAGCTCAATCTGTGTTGCTGTAGTGGGG
TGTCCACGTGGGGGGTACGCGCCATTGCGGAGGGATTGGGCTCGTTTCTG
CAACGGTTGAGCATCGTGCACTGCGAACAGGTGGACGATGAGGCGTTTGT
GTCCATTGCGGACAATTGCGACGAGCTGCGGATGCTGAGCATAGGCAGCT
TGCCCAACGTGACGGATGAGGCGTTGCTAGCGCTTTTCGACGTGGCACGG
CTCGGCGCGCTGCAGCTGAGCGTGCTGTATGTGGAGAACTGCCCGGCGGT
TTCGCAGCTGGGCATTGCGGCCGCCAGTGGCGTGCTGGATGGTGGCGACT
TGCACGCACAGCAGTGGTACGGCGATAGGGCGCAGTGCGGCGAGGAAGAA
TGTGGGCGTGAGGTGGACGACAGCGATGAGGACGAATGTGGGCGTGAGGT
GGACGACAGCGATGAGGACGAATTGGTGTGGGGTTGCGAAGGTACGCACG
CCAAGGTGAAGACAAAGTCGGGCGCGAGCGCAAAGCGTAAACGCGGGCGA
CCGGTGGACAGCGATCCGCACGTGCAGGAGAGGAGGTTTGAGTCGCGGCT
GTGCGAGCTGTATGCGCCGGATACGACGGTGAGGACGGAGGTGTTGAGAC
GGGTAAAGGAGCGACGTGGCGGCACGCTGACGGTGCGCGTGAGGGAGGAG
GGGGACGCGTCGCGCGACGACGGCTCGGAGGAGGAGGAGGAGGAGGACAA
CGGTGAAGGCGGGTGCGAGTGGTCGTGGTGCTGTGGGGCGGTGCAAGTGT
GCGTTTAG
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protein sequence of Ggra2832.t1

>Ggra2832.t1 ID=Ggra2832.t1|Name=Ggra2832.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MHLADCGVTDDALVAIATSCHALHELNLCCCSGVSTWGVRAIAEGLGSFL
QRLSIVHCEQVDDEAFVSIADNCDELRMLSIGSLPNVTDEALLALFDVAR
LGALQLSVLYVENCPAVSQLGIAAASGVLDGGDLHAQQWYGDRAQCGEEE
CGREVDDSDEDECGREVDDSDEDELVWGCEGTHAKVKTKSGASAKRKRGR
PVDSDPHVQERRFESRLCELYAPDTTVRTEVLRRVKERRGGTLTVRVREE
GDASRDDGSEEEEEEDNGEGGCEWSWCCGAVQVCV*
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mRNA from alignment at tig00000123_pilon:410422..411279-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2832.t1 ID=Ggra2832.t1|Name=Ggra2832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000123_pilon:410422..411279- (Gracilaria gracilis GNS1m male)
ATGCACCTGGCGGATTGCGGCGTGACGGACGATGCGCTGGTGGCGATTGC
CACCAGCTGTCATGCGTTGCATGAGCTCAATCTGTGTTGCTGTAGTGGGG
TGTCCACGTGGGGGGTACGCGCCATTGCGGAGGGATTGGGCTCGTTTCTG
CAACGGTTGAGCATCGTGCACTGCGAACAGGTGGACGATGAGGCGTTTGT
GTCCATTGCGGACAATTGCGACGAGCTGCGGATGCTGAGCATAGGCAGCT
TGCCCAACGTGACGGATGAGGCGTTGCTAGCGCTTTTCGACGTGGCACGG
CTCGGCGCGCTGCAGCTGAGCGTGCTGTATGTGGAGAACTGCCCGGCGGT
TTCGCAGCTGGGCATTGCGGCCGCCAGTGGCGTGCTGGATGGTGGCGACT
TGCACGCACAGCAGTGGTACGGCGATAGGGCGCAGTGCGGCGAGGAAGAA
TGTGGGCGTGAGGTGGACGACAGCGATGAGGACGAATGTGGGCGTGAGGT
GGACGACAGCGATGAGGACGAATTGGTGTGGGGTTGCGAAGGTACGCACG
CCAAGGTGAAGACAAAGTCGGGCGCGAGCGCAAAGCGTAAACGCGGGCGA
CCGGTGGACAGCGATCCGCACGTGCAGGAGAGGAGGTTTGAGTCGCGGCT
GTGCGAGCTGTATGCGCCGGATACGACGGTGAGGACGGAGGTGTTGAGAC
GGGTAAAGGAGCGACGTGGCGGCACGCTGACGGTGCGCGTGAGGGAGGAG
GGGGACGCGTCGCGCGACGACGGCTCGGAGGAGGAGGAGGAGGAGGACAA
CGGTGAAGGCGGGTGCGAGTGGTCGTGGTGCTGTGGGGCGGTGCAAGTGT
GCGTTTAG
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Coding sequence (CDS) from alignment at tig00000123_pilon:410422..411279-

>Ggra2832.t1 ID=Ggra2832.t1|Name=Ggra2832.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000123_pilon:410422..411279- (Gracilaria gracilis GNS1m male)
ATGCACCTGGCGGATTGCGGCGTGACGGACGATGCGCTGGTGGCGATTGC
CACCAGCTGTCATGCGTTGCATGAGCTCAATCTGTGTTGCTGTAGTGGGG
TGTCCACGTGGGGGGTACGCGCCATTGCGGAGGGATTGGGCTCGTTTCTG
CAACGGTTGAGCATCGTGCACTGCGAACAGGTGGACGATGAGGCGTTTGT
GTCCATTGCGGACAATTGCGACGAGCTGCGGATGCTGAGCATAGGCAGCT
TGCCCAACGTGACGGATGAGGCGTTGCTAGCGCTTTTCGACGTGGCACGG
CTCGGCGCGCTGCAGCTGAGCGTGCTGTATGTGGAGAACTGCCCGGCGGT
TTCGCAGCTGGGCATTGCGGCCGCCAGTGGCGTGCTGGATGGTGGCGACT
TGCACGCACAGCAGTGGTACGGCGATAGGGCGCAGTGCGGCGAGGAAGAA
TGTGGGCGTGAGGTGGACGACAGCGATGAGGACGAATGTGGGCGTGAGGT
GGACGACAGCGATGAGGACGAATTGGTGTGGGGTTGCGAAGGTACGCACG
CCAAGGTGAAGACAAAGTCGGGCGCGAGCGCAAAGCGTAAACGCGGGCGA
CCGGTGGACAGCGATCCGCACGTGCAGGAGAGGAGGTTTGAGTCGCGGCT
GTGCGAGCTGTATGCGCCGGATACGACGGTGAGGACGGAGGTGTTGAGAC
GGGTAAAGGAGCGACGTGGCGGCACGCTGACGGTGCGCGTGAGGGAGGAG
GGGGACGCGTCGCGCGACGACGGCTCGGAGGAGGAGGAGGAGGAGGACAA
CGGTGAAGGCGGGTGCGAGTGGTCGTGGTGCTGTGGGGCGGTGCAAGTGT
GCGTTTAG
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