Ggra2534.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2534.t1
Unique Name	Ggra2534.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	750

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:604438..606687 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	318829.MGG_13508T0
Preferred name	HRD3
PFAMs	Sel1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14023,ko:K14026
KEGG Pathway	ko04141,map04141
KEGG Module	M00403
GOs	GO:0000151,GO:0000153,GO:0000835,GO:0000836,GO:0000838,GO:0000839,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0030970,GO:0031974,GO:0031984,GO:0032527,GO:0032991,GO:0033036,GO:0033554,GO:0034099,GO:0034613,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0098796,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1903513,GO:1990234
Evalue	7.79e-38
EggNOG OGs	COG0790@1\|root,KOG1550@2759\|Eukaryota,38DKP@33154\|Opisthokonta,3NYAN@4751\|Fungi,3QNXD@4890\|Ascomycota,211I4@147550\|Sordariomycetes,41IMI@639021\|Magnaporthales
Description	Ubiquitin-protein ligase Sel1 Ubx2
COG category	MOT
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2534	Ggra2534	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 604438..606687 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2534.t1.stop1	Ggra2534.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 604438..604440 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2534.t1.CDS1	Ggra2534.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 604438..606687 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2534.t1.exon1	Ggra2534.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 604438..606687 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2534.t1.start1	Ggra2534.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 606685..606687 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2534.t1	Ggra2534.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 604438..606687 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:604438..606687-
coding sequence from alignment at tig00000005_pilon:604438..606687-

mRNA sequence

>Ggra2534.t1 ID=Ggra2534.t1|Name=Ggra2534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp
MLTSFPFRFFTVLVILLSFVKGFRAVSSLSTPNSNINKDVSSSNASLPPA
QYMSDLGGFFFGLERNEYSPWPQEEEDETVVERLISLAEEEISIRQNGRD
AVKLFRLAGLLGHSGAMSTAGALLLSGEASLARDISRAVHHLRIASRAGQ
PDAHGLLGFLHASGIADRYGIEKSEAAALLHWKIAAGTGNVYSMTALGFR
HLYGISLKQSCKAASEYYKQAAHAIATDARHWPTPENFLNSKPPLPEGLE
DVGRARLEDGDGLLQPQASDDSDVVQYYRHAAKRGDRTAMTALGALYYYG
GYGIDPDQGQARRILQHAAQADGHEAHAMLGYIAMRDRRNETAVMHFRHG
AAFGNQMAHYALGMCHLHGLLGVEQIYERAAMHFEIASKAGHADSSFQLA
LLLWNGRGRDKDHEAAYEEFKTAAKHGNIQAKYNLGTILLSGTLPAKAAN
CVEGVAFLKEVAEEGEWKTLFEMASVSLENGDDYGALYRYMQAAYVGIEI
AEFNVAFMLERSKSDGMAELSHWDRKRRLEEAYQLYQYSGIQGHTDSLVR
LGNVLFSENGDYEEAAHVYEMAAKLNNAEGMVAIGLMRARGLGVEKDRDI
ALHYLTSASLADEDAVAPATVAVFGLRVYWALLDICARFGDWCSSSNDYD
PVQDELKLAKLLKIQTRREPCHGIDSLQIFWVPLLRILLLSELCFWHSVE
FLSLEGNVSRVNLRYNLSTIREVGCPEWDHKYINTAPSCFSLYALKPNC*

spliced messenger RNA

>Ggra2534.t1 ID=Ggra2534.t1|Name=Ggra2534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2250bp|location=Sequence derived from alignment at tig00000005_pilon:604438..606687- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACTTCTTTTCCTTTTCGCTTTTTCACGGTTCTTGTGATTCTGTT
GTCCTTTGTTAAGGGTTTCCGTGCAGTATCCTCTCTTTCGACACCGAATT
CTAACATCAACAAAGATGTATCCTCATCGAACGCTTCCTTACCCCCGGCG
CAATACATGTCCGATCTTGGCGGGTTTTTCTTCGGACTCGAGAGAAACGA
GTATTCGCCATGGCCCCAAGAAGAAGAAGATGAAACAGTAGTAGAGCGTC
TGATATCACTTGCTGAGGAGGAGATATCTATACGTCAGAATGGTCGTGAT
GCTGTAAAACTATTCCGCTTGGCGGGATTGCTTGGCCACTCTGGTGCCAT
GTCCACTGCTGGGGCACTTCTGCTCTCAGGAGAGGCATCGCTAGCACGAG
ATATTTCGCGCGCCGTGCATCACCTTCGCATTGCTTCCAGAGCCGGGCAG
CCGGATGCCCATGGACTTCTCGGCTTTTTGCATGCATCCGGAATCGCTGA
CCGATACGGCATTGAGAAATCAGAAGCAGCAGCCTTGTTGCATTGGAAGA
TTGCTGCTGGTACCGGAAACGTTTATTCAATGACGGCCCTCGGATTTCGT
CATCTCTATGGAATCAGTCTAAAGCAGAGTTGCAAAGCCGCTTCTGAGTA
CTACAAACAAGCTGCGCATGCAATTGCCACTGACGCACGTCATTGGCCCA
CCCCCGAAAACTTCCTCAATTCAAAGCCTCCTCTCCCTGAGGGTCTTGAA
GACGTTGGCAGAGCTAGACTAGAAGACGGTGACGGCCTTCTCCAGCCACA
AGCATCGGATGACAGTGACGTTGTGCAATATTATCGACATGCTGCCAAGA
GAGGCGACCGTACTGCGATGACAGCACTAGGTGCCTTGTATTATTACGGA
GGATATGGTATCGATCCAGATCAGGGACAAGCTCGTCGTATTCTTCAACA
CGCTGCTCAAGCTGATGGACACGAAGCCCATGCAATGCTTGGATATATAG
CTATGAGAGACAGGCGGAATGAGACTGCAGTTATGCACTTCCGACATGGG
GCCGCATTCGGGAATCAAATGGCTCACTATGCCCTCGGAATGTGTCACTT
ACACGGTCTGCTTGGAGTAGAACAAATCTACGAAAGGGCTGCAATGCATT
TCGAAATTGCTTCTAAAGCAGGTCATGCAGATTCATCATTTCAACTGGCG
CTCCTGCTTTGGAATGGGCGTGGGAGGGACAAAGATCATGAGGCTGCCTA
CGAAGAGTTCAAAACAGCTGCGAAGCACGGAAATATCCAGGCTAAGTACA
ACCTGGGTACTATTCTATTAAGTGGCACTCTTCCGGCCAAGGCTGCCAAC
TGCGTTGAAGGAGTTGCTTTTCTGAAAGAGGTAGCAGAAGAAGGAGAGTG
GAAAACACTTTTTGAAATGGCATCTGTTTCCTTAGAGAACGGGGATGATT
ACGGAGCCTTATACCGTTACATGCAAGCAGCCTATGTTGGCATCGAAATC
GCAGAATTCAATGTAGCCTTCATGCTAGAGCGAAGCAAGTCCGACGGAAT
GGCGGAATTAAGCCATTGGGATCGCAAACGAAGACTTGAGGAAGCTTATC
AACTCTATCAGTATTCGGGTATACAAGGGCACACTGACTCGCTTGTACGT
TTGGGCAACGTTCTTTTCTCCGAAAACGGAGACTACGAGGAAGCCGCTCA
TGTTTATGAGATGGCCGCCAAACTTAACAATGCTGAAGGCATGGTTGCAA
TTGGTCTTATGCGCGCTCGAGGGCTCGGCGTGGAGAAAGATCGCGACATT
GCTCTACATTATCTCACCTCCGCTTCTCTTGCTGACGAGGATGCAGTAGC
GCCCGCTACTGTCGCTGTCTTCGGCCTTCGCGTGTATTGGGCTCTTCTAG
ATATATGCGCAAGATTTGGAGATTGGTGTAGCAGTAGCAATGATTACGAT
CCCGTTCAGGATGAATTGAAACTCGCGAAATTGCTCAAGATCCAGACACG
GAGGGAGCCCTGTCACGGAATAGATTCACTACAAATATTCTGGGTTCCTT
TGCTGAGGATTTTACTGTTGTCGGAGCTTTGCTTTTGGCACTCTGTGGAA
TTCTTGTCCTTAGAGGGAAACGTCTCGCGCGTCAACCTACGATACAACCT
GAGCACGATCCGTGAGGTCGGATGTCCTGAGTGGGACCACAAATATATTA
ACACCGCACCCTCCTGCTTCAGTCTGTATGCATTGAAGCCTAACTGCTAA

protein sequence of Ggra2534.t1

>Ggra2534.t1 ID=Ggra2534.t1|Name=Ggra2534.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=750bp
MLTSFPFRFFTVLVILLSFVKGFRAVSSLSTPNSNINKDVSSSNASLPPA
QYMSDLGGFFFGLERNEYSPWPQEEEDETVVERLISLAEEEISIRQNGRD
AVKLFRLAGLLGHSGAMSTAGALLLSGEASLARDISRAVHHLRIASRAGQ
PDAHGLLGFLHASGIADRYGIEKSEAAALLHWKIAAGTGNVYSMTALGFR
HLYGISLKQSCKAASEYYKQAAHAIATDARHWPTPENFLNSKPPLPEGLE
DVGRARLEDGDGLLQPQASDDSDVVQYYRHAAKRGDRTAMTALGALYYYG
GYGIDPDQGQARRILQHAAQADGHEAHAMLGYIAMRDRRNETAVMHFRHG
AAFGNQMAHYALGMCHLHGLLGVEQIYERAAMHFEIASKAGHADSSFQLA
LLLWNGRGRDKDHEAAYEEFKTAAKHGNIQAKYNLGTILLSGTLPAKAAN
CVEGVAFLKEVAEEGEWKTLFEMASVSLENGDDYGALYRYMQAAYVGIEI
AEFNVAFMLERSKSDGMAELSHWDRKRRLEEAYQLYQYSGIQGHTDSLVR
LGNVLFSENGDYEEAAHVYEMAAKLNNAEGMVAIGLMRARGLGVEKDRDI
ALHYLTSASLADEDAVAPATVAVFGLRVYWALLDICARFGDWCSSSNDYD
PVQDELKLAKLLKIQTRREPCHGIDSLQIFWVPLLRILLLSELCFWHSVE
FLSLEGNVSRVNLRYNLSTIREVGCPEWDHKYINTAPSCFSLYALKPNC*

mRNA from alignment at tig00000005_pilon:604438..606687-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2534.t1 ID=Ggra2534.t1|Name=Ggra2534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2250bp|location=Sequence derived from alignment at tig00000005_pilon:604438..606687- (Gracilaria gracilis GNS1m male)
ATGTTGACTTCTTTTCCTTTTCGCTTTTTCACGGTTCTTGTGATTCTGTT
GTCCTTTGTTAAGGGTTTCCGTGCAGTATCCTCTCTTTCGACACCGAATT
CTAACATCAACAAAGATGTATCCTCATCGAACGCTTCCTTACCCCCGGCG
CAATACATGTCCGATCTTGGCGGGTTTTTCTTCGGACTCGAGAGAAACGA
GTATTCGCCATGGCCCCAAGAAGAAGAAGATGAAACAGTAGTAGAGCGTC
TGATATCACTTGCTGAGGAGGAGATATCTATACGTCAGAATGGTCGTGAT
GCTGTAAAACTATTCCGCTTGGCGGGATTGCTTGGCCACTCTGGTGCCAT
GTCCACTGCTGGGGCACTTCTGCTCTCAGGAGAGGCATCGCTAGCACGAG
ATATTTCGCGCGCCGTGCATCACCTTCGCATTGCTTCCAGAGCCGGGCAG
CCGGATGCCCATGGACTTCTCGGCTTTTTGCATGCATCCGGAATCGCTGA
CCGATACGGCATTGAGAAATCAGAAGCAGCAGCCTTGTTGCATTGGAAGA
TTGCTGCTGGTACCGGAAACGTTTATTCAATGACGGCCCTCGGATTTCGT
CATCTCTATGGAATCAGTCTAAAGCAGAGTTGCAAAGCCGCTTCTGAGTA
CTACAAACAAGCTGCGCATGCAATTGCCACTGACGCACGTCATTGGCCCA
CCCCCGAAAACTTCCTCAATTCAAAGCCTCCTCTCCCTGAGGGTCTTGAA
GACGTTGGCAGAGCTAGACTAGAAGACGGTGACGGCCTTCTCCAGCCACA
AGCATCGGATGACAGTGACGTTGTGCAATATTATCGACATGCTGCCAAGA
GAGGCGACCGTACTGCGATGACAGCACTAGGTGCCTTGTATTATTACGGA
GGATATGGTATCGATCCAGATCAGGGACAAGCTCGTCGTATTCTTCAACA
CGCTGCTCAAGCTGATGGACACGAAGCCCATGCAATGCTTGGATATATAG
CTATGAGAGACAGGCGGAATGAGACTGCAGTTATGCACTTCCGACATGGG
GCCGCATTCGGGAATCAAATGGCTCACTATGCCCTCGGAATGTGTCACTT
ACACGGTCTGCTTGGAGTAGAACAAATCTACGAAAGGGCTGCAATGCATT
TCGAAATTGCTTCTAAAGCAGGTCATGCAGATTCATCATTTCAACTGGCG
CTCCTGCTTTGGAATGGGCGTGGGAGGGACAAAGATCATGAGGCTGCCTA
CGAAGAGTTCAAAACAGCTGCGAAGCACGGAAATATCCAGGCTAAGTACA
ACCTGGGTACTATTCTATTAAGTGGCACTCTTCCGGCCAAGGCTGCCAAC
TGCGTTGAAGGAGTTGCTTTTCTGAAAGAGGTAGCAGAAGAAGGAGAGTG
GAAAACACTTTTTGAAATGGCATCTGTTTCCTTAGAGAACGGGGATGATT
ACGGAGCCTTATACCGTTACATGCAAGCAGCCTATGTTGGCATCGAAATC
GCAGAATTCAATGTAGCCTTCATGCTAGAGCGAAGCAAGTCCGACGGAAT
GGCGGAATTAAGCCATTGGGATCGCAAACGAAGACTTGAGGAAGCTTATC
AACTCTATCAGTATTCGGGTATACAAGGGCACACTGACTCGCTTGTACGT
TTGGGCAACGTTCTTTTCTCCGAAAACGGAGACTACGAGGAAGCCGCTCA
TGTTTATGAGATGGCCGCCAAACTTAACAATGCTGAAGGCATGGTTGCAA
TTGGTCTTATGCGCGCTCGAGGGCTCGGCGTGGAGAAAGATCGCGACATT
GCTCTACATTATCTCACCTCCGCTTCTCTTGCTGACGAGGATGCAGTAGC
GCCCGCTACTGTCGCTGTCTTCGGCCTTCGCGTGTATTGGGCTCTTCTAG
ATATATGCGCAAGATTTGGAGATTGGTGTAGCAGTAGCAATGATTACGAT
CCCGTTCAGGATGAATTGAAACTCGCGAAATTGCTCAAGATCCAGACACG
GAGGGAGCCCTGTCACGGAATAGATTCACTACAAATATTCTGGGTTCCTT
TGCTGAGGATTTTACTGTTGTCGGAGCTTTGCTTTTGGCACTCTGTGGAA
TTCTTGTCCTTAGAGGGAAACGTCTCGCGCGTCAACCTACGATACAACCT
GAGCACGATCCGTGAGGTCGGATGTCCTGAGTGGGACCACAAATATATTA
ACACCGCACCCTCCTGCTTCAGTCTGTATGCATTGAAGCCTAACTGCTAA

Coding sequence (CDS) from alignment at tig00000005_pilon:604438..606687-

>Ggra2534.t1 ID=Ggra2534.t1|Name=Ggra2534.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2250bp|location=Sequence derived from alignment at tig00000005_pilon:604438..606687- (Gracilaria gracilis GNS1m male)
ATGTTGACTTCTTTTCCTTTTCGCTTTTTCACGGTTCTTGTGATTCTGTT
GTCCTTTGTTAAGGGTTTCCGTGCAGTATCCTCTCTTTCGACACCGAATT
CTAACATCAACAAAGATGTATCCTCATCGAACGCTTCCTTACCCCCGGCG
CAATACATGTCCGATCTTGGCGGGTTTTTCTTCGGACTCGAGAGAAACGA
GTATTCGCCATGGCCCCAAGAAGAAGAAGATGAAACAGTAGTAGAGCGTC
TGATATCACTTGCTGAGGAGGAGATATCTATACGTCAGAATGGTCGTGAT
GCTGTAAAACTATTCCGCTTGGCGGGATTGCTTGGCCACTCTGGTGCCAT
GTCCACTGCTGGGGCACTTCTGCTCTCAGGAGAGGCATCGCTAGCACGAG
ATATTTCGCGCGCCGTGCATCACCTTCGCATTGCTTCCAGAGCCGGGCAG
CCGGATGCCCATGGACTTCTCGGCTTTTTGCATGCATCCGGAATCGCTGA
CCGATACGGCATTGAGAAATCAGAAGCAGCAGCCTTGTTGCATTGGAAGA
TTGCTGCTGGTACCGGAAACGTTTATTCAATGACGGCCCTCGGATTTCGT
CATCTCTATGGAATCAGTCTAAAGCAGAGTTGCAAAGCCGCTTCTGAGTA
CTACAAACAAGCTGCGCATGCAATTGCCACTGACGCACGTCATTGGCCCA
CCCCCGAAAACTTCCTCAATTCAAAGCCTCCTCTCCCTGAGGGTCTTGAA
GACGTTGGCAGAGCTAGACTAGAAGACGGTGACGGCCTTCTCCAGCCACA
AGCATCGGATGACAGTGACGTTGTGCAATATTATCGACATGCTGCCAAGA
GAGGCGACCGTACTGCGATGACAGCACTAGGTGCCTTGTATTATTACGGA
GGATATGGTATCGATCCAGATCAGGGACAAGCTCGTCGTATTCTTCAACA
CGCTGCTCAAGCTGATGGACACGAAGCCCATGCAATGCTTGGATATATAG
CTATGAGAGACAGGCGGAATGAGACTGCAGTTATGCACTTCCGACATGGG
GCCGCATTCGGGAATCAAATGGCTCACTATGCCCTCGGAATGTGTCACTT
ACACGGTCTGCTTGGAGTAGAACAAATCTACGAAAGGGCTGCAATGCATT
TCGAAATTGCTTCTAAAGCAGGTCATGCAGATTCATCATTTCAACTGGCG
CTCCTGCTTTGGAATGGGCGTGGGAGGGACAAAGATCATGAGGCTGCCTA
CGAAGAGTTCAAAACAGCTGCGAAGCACGGAAATATCCAGGCTAAGTACA
ACCTGGGTACTATTCTATTAAGTGGCACTCTTCCGGCCAAGGCTGCCAAC
TGCGTTGAAGGAGTTGCTTTTCTGAAAGAGGTAGCAGAAGAAGGAGAGTG
GAAAACACTTTTTGAAATGGCATCTGTTTCCTTAGAGAACGGGGATGATT
ACGGAGCCTTATACCGTTACATGCAAGCAGCCTATGTTGGCATCGAAATC
GCAGAATTCAATGTAGCCTTCATGCTAGAGCGAAGCAAGTCCGACGGAAT
GGCGGAATTAAGCCATTGGGATCGCAAACGAAGACTTGAGGAAGCTTATC
AACTCTATCAGTATTCGGGTATACAAGGGCACACTGACTCGCTTGTACGT
TTGGGCAACGTTCTTTTCTCCGAAAACGGAGACTACGAGGAAGCCGCTCA
TGTTTATGAGATGGCCGCCAAACTTAACAATGCTGAAGGCATGGTTGCAA
TTGGTCTTATGCGCGCTCGAGGGCTCGGCGTGGAGAAAGATCGCGACATT
GCTCTACATTATCTCACCTCCGCTTCTCTTGCTGACGAGGATGCAGTAGC
GCCCGCTACTGTCGCTGTCTTCGGCCTTCGCGTGTATTGGGCTCTTCTAG
ATATATGCGCAAGATTTGGAGATTGGTGTAGCAGTAGCAATGATTACGAT
CCCGTTCAGGATGAATTGAAACTCGCGAAATTGCTCAAGATCCAGACACG
GAGGGAGCCCTGTCACGGAATAGATTCACTACAAATATTCTGGGTTCCTT
TGCTGAGGATTTTACTGTTGTCGGAGCTTTGCTTTTGGCACTCTGTGGAA
TTCTTGTCCTTAGAGGGAAACGTCTCGCGCGTCAACCTACGATACAACCT
GAGCACGATCCGTGAGGTCGGATGTCCTGAGTGGGACCACAAATATATTA
ACACCGCACCCTCCTGCTTCAGTCTGTATGCATTGAAGCCTAACTGCTAA