Ggra2316.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2316.t1
Unique NameGgra2316.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:201196..202617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue5.02e-15
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2316Ggra2316Gracilaria gracilis GNS1m malegenetig00000122_pilon 201196..202617 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2316.t1.start1Ggra2316.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 201196..201198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2316.t1.CDS1Ggra2316.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 201196..202617 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2316.t1.exon1Ggra2316.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 201196..202617 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2316.t1.stop1Ggra2316.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 202615..202617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2316.t1Ggra2316.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 201196..202617 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2316.t1 ID=Ggra2316.t1|Name=Ggra2316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MYSSLSHILISHPDNSSILTTSDNRLPSLSYNGDYYSDPQDLCSLVRETI
GASFRLDFLHSDAEEYCEFYYRAALLVFNLPYRDKPDAPQLYKWVPINHA
DSVIVHPRSEAVLQYLQKYKVRGLDANAEYLRPHSRANWFCDASKWFSEK
VEEFSKTHVQEIVKLRTGSSACILRAKTSAANEFYMKTVCSSRPYDEIGV
THAVSTVLPQYFRKPFVIDRNTNCICMEDLGKVLGNEECTLMENSQLVLE
VLDEWGSIQEVSVEMVNELKAKGVPVLGGKEIMSKLESIVKDPQWYNAQM
DVLKRLEMKEYGRDEYVERFLKYANEVVGKASEFKVPLTLVHGDLNPVNV
ALSSSGRFTFFDFEATCISYPLLDAMNFMFICNEYNTATFDDLWFYTQRW
SEYESESRLKELFDVVYEIEKLIRVCGGYESWLKAESGERLLMYTEMGSP
VSKHFEEWEESKQDTNVKMVVDG*
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spliced messenger RNA

>Ggra2316.t1 ID=Ggra2316.t1|Name=Ggra2316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000122_pilon:201196..202617+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAGCTCTCTATCTCACATCTTGATCAGCCATCCGGATAACAGCAG
CATTTTGACAACATCGGACAATCGGCTTCCTTCGCTGTCCTACAATGGCG
ATTATTACTCCGATCCCCAGGATCTTTGTTCTCTGGTTCGTGAAACCATT
GGCGCCTCCTTCAGATTGGACTTTTTGCATTCCGATGCGGAAGAGTATTG
TGAATTCTATTACAGGGCCGCACTCCTCGTCTTTAATCTTCCATATCGTG
ACAAACCTGACGCGCCTCAACTGTATAAATGGGTGCCAATCAATCACGCT
GACTCCGTAATTGTTCACCCACGTAGCGAGGCCGTACTGCAATACTTACA
AAAGTACAAGGTTCGTGGTTTGGATGCGAACGCCGAGTACCTACGGCCAC
ATTCCAGGGCCAATTGGTTCTGTGATGCCTCAAAGTGGTTCTCAGAGAAG
GTTGAAGAGTTCAGTAAAACTCATGTGCAGGAGATTGTCAAACTGAGAAC
TGGGTCGAGCGCGTGTATACTTCGAGCGAAAACGTCGGCTGCGAATGAGT
TTTACATGAAAACTGTGTGTTCTAGCAGACCATACGATGAAATCGGCGTC
ACACACGCAGTAAGCACGGTACTGCCGCAGTACTTTCGCAAACCTTTTGT
CATTGATCGAAACACAAACTGTATATGTATGGAGGACCTCGGAAAAGTGC
TTGGTAATGAGGAATGTACACTTATGGAGAACTCCCAGCTTGTACTGGAA
GTTTTAGACGAATGGGGTTCCATACAAGAAGTGTCGGTTGAAATGGTAAA
CGAGTTAAAAGCGAAAGGCGTGCCTGTGCTAGGCGGAAAAGAAATCATGA
GTAAGCTTGAATCCATAGTGAAGGACCCGCAATGGTACAACGCTCAAATG
GATGTGCTGAAGCGGCTTGAGATGAAAGAGTACGGTCGGGATGAATATGT
TGAGAGGTTTCTTAAGTATGCGAATGAAGTTGTAGGCAAGGCGTCTGAAT
TTAAGGTGCCGCTAACGCTTGTGCATGGGGACCTCAATCCGGTGAATGTA
GCATTAAGTTCAAGCGGTCGCTTTACGTTTTTCGATTTCGAAGCGACTTG
CATTAGTTATCCTCTCTTGGACGCAATGAACTTCATGTTTATTTGTAATG
AGTATAACACAGCAACCTTTGATGATCTGTGGTTTTACACGCAGCGATGG
AGTGAATATGAGAGTGAGTCAAGGCTAAAGGAATTGTTTGACGTGGTTTA
TGAAATCGAAAAACTCATTCGTGTATGTGGCGGTTATGAGTCCTGGCTGA
AGGCAGAGTCAGGCGAAAGACTCCTGATGTACACTGAGATGGGCTCTCCG
GTTTCTAAACATTTTGAAGAGTGGGAAGAATCGAAACAAGATACAAATGT
GAAGATGGTTGTGGACGGATGA
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protein sequence of Ggra2316.t1

>Ggra2316.t1 ID=Ggra2316.t1|Name=Ggra2316.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MYSSLSHILISHPDNSSILTTSDNRLPSLSYNGDYYSDPQDLCSLVRETI
GASFRLDFLHSDAEEYCEFYYRAALLVFNLPYRDKPDAPQLYKWVPINHA
DSVIVHPRSEAVLQYLQKYKVRGLDANAEYLRPHSRANWFCDASKWFSEK
VEEFSKTHVQEIVKLRTGSSACILRAKTSAANEFYMKTVCSSRPYDEIGV
THAVSTVLPQYFRKPFVIDRNTNCICMEDLGKVLGNEECTLMENSQLVLE
VLDEWGSIQEVSVEMVNELKAKGVPVLGGKEIMSKLESIVKDPQWYNAQM
DVLKRLEMKEYGRDEYVERFLKYANEVVGKASEFKVPLTLVHGDLNPVNV
ALSSSGRFTFFDFEATCISYPLLDAMNFMFICNEYNTATFDDLWFYTQRW
SEYESESRLKELFDVVYEIEKLIRVCGGYESWLKAESGERLLMYTEMGSP
VSKHFEEWEESKQDTNVKMVVDG*
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mRNA from alignment at tig00000122_pilon:201196..202617+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2316.t1 ID=Ggra2316.t1|Name=Ggra2316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000122_pilon:201196..202617+ (Gracilaria gracilis GNS1m male)
ATGTACAGCTCTCTATCTCACATCTTGATCAGCCATCCGGATAACAGCAG
CATTTTGACAACATCGGACAATCGGCTTCCTTCGCTGTCCTACAATGGCG
ATTATTACTCCGATCCCCAGGATCTTTGTTCTCTGGTTCGTGAAACCATT
GGCGCCTCCTTCAGATTGGACTTTTTGCATTCCGATGCGGAAGAGTATTG
TGAATTCTATTACAGGGCCGCACTCCTCGTCTTTAATCTTCCATATCGTG
ACAAACCTGACGCGCCTCAACTGTATAAATGGGTGCCAATCAATCACGCT
GACTCCGTAATTGTTCACCCACGTAGCGAGGCCGTACTGCAATACTTACA
AAAGTACAAGGTTCGTGGTTTGGATGCGAACGCCGAGTACCTACGGCCAC
ATTCCAGGGCCAATTGGTTCTGTGATGCCTCAAAGTGGTTCTCAGAGAAG
GTTGAAGAGTTCAGTAAAACTCATGTGCAGGAGATTGTCAAACTGAGAAC
TGGGTCGAGCGCGTGTATACTTCGAGCGAAAACGTCGGCTGCGAATGAGT
TTTACATGAAAACTGTGTGTTCTAGCAGACCATACGATGAAATCGGCGTC
ACACACGCAGTAAGCACGGTACTGCCGCAGTACTTTCGCAAACCTTTTGT
CATTGATCGAAACACAAACTGTATATGTATGGAGGACCTCGGAAAAGTGC
TTGGTAATGAGGAATGTACACTTATGGAGAACTCCCAGCTTGTACTGGAA
GTTTTAGACGAATGGGGTTCCATACAAGAAGTGTCGGTTGAAATGGTAAA
CGAGTTAAAAGCGAAAGGCGTGCCTGTGCTAGGCGGAAAAGAAATCATGA
GTAAGCTTGAATCCATAGTGAAGGACCCGCAATGGTACAACGCTCAAATG
GATGTGCTGAAGCGGCTTGAGATGAAAGAGTACGGTCGGGATGAATATGT
TGAGAGGTTTCTTAAGTATGCGAATGAAGTTGTAGGCAAGGCGTCTGAAT
TTAAGGTGCCGCTAACGCTTGTGCATGGGGACCTCAATCCGGTGAATGTA
GCATTAAGTTCAAGCGGTCGCTTTACGTTTTTCGATTTCGAAGCGACTTG
CATTAGTTATCCTCTCTTGGACGCAATGAACTTCATGTTTATTTGTAATG
AGTATAACACAGCAACCTTTGATGATCTGTGGTTTTACACGCAGCGATGG
AGTGAATATGAGAGTGAGTCAAGGCTAAAGGAATTGTTTGACGTGGTTTA
TGAAATCGAAAAACTCATTCGTGTATGTGGCGGTTATGAGTCCTGGCTGA
AGGCAGAGTCAGGCGAAAGACTCCTGATGTACACTGAGATGGGCTCTCCG
GTTTCTAAACATTTTGAAGAGTGGGAAGAATCGAAACAAGATACAAATGT
GAAGATGGTTGTGGACGGATGA
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Coding sequence (CDS) from alignment at tig00000122_pilon:201196..202617+

>Ggra2316.t1 ID=Ggra2316.t1|Name=Ggra2316.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000122_pilon:201196..202617+ (Gracilaria gracilis GNS1m male)
ATGTACAGCTCTCTATCTCACATCTTGATCAGCCATCCGGATAACAGCAG
CATTTTGACAACATCGGACAATCGGCTTCCTTCGCTGTCCTACAATGGCG
ATTATTACTCCGATCCCCAGGATCTTTGTTCTCTGGTTCGTGAAACCATT
GGCGCCTCCTTCAGATTGGACTTTTTGCATTCCGATGCGGAAGAGTATTG
TGAATTCTATTACAGGGCCGCACTCCTCGTCTTTAATCTTCCATATCGTG
ACAAACCTGACGCGCCTCAACTGTATAAATGGGTGCCAATCAATCACGCT
GACTCCGTAATTGTTCACCCACGTAGCGAGGCCGTACTGCAATACTTACA
AAAGTACAAGGTTCGTGGTTTGGATGCGAACGCCGAGTACCTACGGCCAC
ATTCCAGGGCCAATTGGTTCTGTGATGCCTCAAAGTGGTTCTCAGAGAAG
GTTGAAGAGTTCAGTAAAACTCATGTGCAGGAGATTGTCAAACTGAGAAC
TGGGTCGAGCGCGTGTATACTTCGAGCGAAAACGTCGGCTGCGAATGAGT
TTTACATGAAAACTGTGTGTTCTAGCAGACCATACGATGAAATCGGCGTC
ACACACGCAGTAAGCACGGTACTGCCGCAGTACTTTCGCAAACCTTTTGT
CATTGATCGAAACACAAACTGTATATGTATGGAGGACCTCGGAAAAGTGC
TTGGTAATGAGGAATGTACACTTATGGAGAACTCCCAGCTTGTACTGGAA
GTTTTAGACGAATGGGGTTCCATACAAGAAGTGTCGGTTGAAATGGTAAA
CGAGTTAAAAGCGAAAGGCGTGCCTGTGCTAGGCGGAAAAGAAATCATGA
GTAAGCTTGAATCCATAGTGAAGGACCCGCAATGGTACAACGCTCAAATG
GATGTGCTGAAGCGGCTTGAGATGAAAGAGTACGGTCGGGATGAATATGT
TGAGAGGTTTCTTAAGTATGCGAATGAAGTTGTAGGCAAGGCGTCTGAAT
TTAAGGTGCCGCTAACGCTTGTGCATGGGGACCTCAATCCGGTGAATGTA
GCATTAAGTTCAAGCGGTCGCTTTACGTTTTTCGATTTCGAAGCGACTTG
CATTAGTTATCCTCTCTTGGACGCAATGAACTTCATGTTTATTTGTAATG
AGTATAACACAGCAACCTTTGATGATCTGTGGTTTTACACGCAGCGATGG
AGTGAATATGAGAGTGAGTCAAGGCTAAAGGAATTGTTTGACGTGGTTTA
TGAAATCGAAAAACTCATTCGTGTATGTGGCGGTTATGAGTCCTGGCTGA
AGGCAGAGTCAGGCGAAAGACTCCTGATGTACACTGAGATGGGCTCTCCG
GTTTCTAAACATTTTGAAGAGTGGGAAGAATCGAAACAAGATACAAATGT
GAAGATGGTTGTGGACGGATGA
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