Ggra3098.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3098.t1
Unique Name	Ggra3098.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000120_pilon	contig	tig00000120_pilon:129947..131335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3098	Ggra3098	Gracilaria gracilis GNS1m male	gene	tig00000120_pilon 129947..131335 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3098.t1.start1	Ggra3098.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000120_pilon 129947..129949 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3098.t1.CDS1	Ggra3098.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000120_pilon 129947..131335 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3098.t1.exon1	Ggra3098.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000120_pilon 129947..131335 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3098.t1.stop1	Ggra3098.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000120_pilon 131333..131335 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3098.t1	Ggra3098.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000120_pilon 129947..131335 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000120_pilon:129947..131335+
coding sequence from alignment at tig00000120_pilon:129947..131335+

mRNA sequence

>Ggra3098.t1 ID=Ggra3098.t1|Name=Ggra3098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=463bp
MNHQHEQQTVLLDGVTYSLDVAPPVDSPLVQHHLSTLPADVPLLSQPVGQ
LSRHVVALSQFDAVQRAFSELLLNVGNLNIRLCLGRLHDACASVLMQQMV
TLRMIAASPFQNESLTHFNRLALTLGAFVMECVSVLQTITTCLSALSTGL
RDAQHSLNSTLNTKQQTLSTLRVQNVSIMQQQSQLLQSLSEYAEQYSQLQ
ASQQRISRRQTLCNIFSFVPSVDQSLQSSYNLHLFEPVSNIISDVNDQYN
QSRRETEHVLTMKRRQRERNRNLVNELAECERHIQQAAEHINDCNQQLHH
VTEAIQSAQTIGVLALRVITAFKSIAHACQTLSSSQLPTLIDLTCSPSSE
KPAIRQGDLSVLDASQLCTQPTWTMKTAVKQKFVQYYAQWVALKHCCQQC
LKQLSDEQHQTIPQLCWDAFDNEASAPDVPSLFPSSSAVTEHQQSSVAIE
SHDAEHLSVAST*

spliced messenger RNA

>Ggra3098.t1 ID=Ggra3098.t1|Name=Ggra3098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000120_pilon:129947..131335+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCATCAACACGAGCAGCAGACGGTGCTGCTTGACGGCGTCACGTA
CTCGCTGGACGTCGCACCGCCCGTCGATTCGCCGCTCGTGCAGCATCATT
TGTCCACGCTGCCCGCGGACGTGCCGCTCTTGTCGCAGCCGGTTGGGCAG
CTTTCGAGGCATGTCGTCGCGCTTTCGCAGTTCGACGCCGTGCAACGCGC
CTTTTCCGAGCTGCTTCTCAACGTGGGTAACCTCAACATACGCCTTTGTC
TGGGCAGGCTGCATGATGCCTGCGCTTCCGTTCTTATGCAGCAGATGGTC
ACCCTGCGTATGATTGCCGCCTCTCCGTTTCAGAACGAGTCACTCACCCA
TTTCAACCGCCTCGCGCTCACGTTGGGTGCCTTTGTCATGGAGTGTGTGT
CCGTGTTGCAGACAATCACCACATGTCTGTCCGCTTTGTCTACCGGCTTA
CGCGACGCGCAGCATTCCCTCAACAGCACGCTCAATACCAAGCAGCAGAC
GCTGTCCACACTTCGCGTGCAAAACGTGTCTATCATGCAGCAACAATCGC
AATTGCTGCAATCACTCTCCGAATATGCCGAACAATACTCCCAGTTACAA
GCCTCGCAACAACGCATATCGCGCCGACAAACGCTGTGTAACATCTTTTC
CTTTGTGCCCTCCGTGGATCAGTCGCTGCAATCCTCGTACAATTTGCACC
TTTTTGAGCCCGTTTCCAACATCATTAGCGACGTCAACGACCAGTACAAC
CAATCGCGTCGCGAAACCGAACACGTATTGACCATGAAGCGCCGTCAACG
AGAGCGCAATAGGAACCTTGTCAACGAACTTGCCGAATGCGAACGACATA
TTCAACAAGCAGCCGAGCACATTAACGACTGCAATCAACAACTGCACCAC
GTCACTGAGGCCATTCAATCAGCGCAGACAATCGGCGTGCTTGCTCTGCG
AGTCATCACCGCCTTCAAATCGATTGCACACGCATGCCAAACGCTTTCAT
CCTCTCAACTCCCCACGCTTATCGATCTCACTTGCTCTCCATCTTCGGAA
AAACCGGCCATTCGGCAAGGCGACCTATCTGTCTTGGATGCTTCACAGCT
TTGTACACAGCCAACATGGACCATGAAAACTGCTGTCAAACAAAAGTTTG
TGCAGTATTATGCGCAGTGGGTTGCTTTGAAACACTGTTGTCAACAATGC
TTGAAACAGCTTTCTGATGAACAACATCAAACGATACCGCAGCTTTGTTG
GGATGCGTTTGATAATGAAGCTTCTGCACCAGATGTACCGTCTTTGTTTC
CGTCTTCCAGTGCTGTTACCGAGCACCAACAAAGCTCTGTCGCAATCGAG
TCGCACGATGCAGAACATCTTTCCGTAGCTAGCACATAA

protein sequence of Ggra3098.t1

>Ggra3098.t1 ID=Ggra3098.t1|Name=Ggra3098.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=463bp
MNHQHEQQTVLLDGVTYSLDVAPPVDSPLVQHHLSTLPADVPLLSQPVGQ
LSRHVVALSQFDAVQRAFSELLLNVGNLNIRLCLGRLHDACASVLMQQMV
TLRMIAASPFQNESLTHFNRLALTLGAFVMECVSVLQTITTCLSALSTGL
RDAQHSLNSTLNTKQQTLSTLRVQNVSIMQQQSQLLQSLSEYAEQYSQLQ
ASQQRISRRQTLCNIFSFVPSVDQSLQSSYNLHLFEPVSNIISDVNDQYN
QSRRETEHVLTMKRRQRERNRNLVNELAECERHIQQAAEHINDCNQQLHH
VTEAIQSAQTIGVLALRVITAFKSIAHACQTLSSSQLPTLIDLTCSPSSE
KPAIRQGDLSVLDASQLCTQPTWTMKTAVKQKFVQYYAQWVALKHCCQQC
LKQLSDEQHQTIPQLCWDAFDNEASAPDVPSLFPSSSAVTEHQQSSVAIE
SHDAEHLSVAST*

mRNA from alignment at tig00000120_pilon:129947..131335+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3098.t1 ID=Ggra3098.t1|Name=Ggra3098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000120_pilon:129947..131335+ (Gracilaria gracilis GNS1m male)
ATGAATCATCAACACGAGCAGCAGACGGTGCTGCTTGACGGCGTCACGTA
CTCGCTGGACGTCGCACCGCCCGTCGATTCGCCGCTCGTGCAGCATCATT
TGTCCACGCTGCCCGCGGACGTGCCGCTCTTGTCGCAGCCGGTTGGGCAG
CTTTCGAGGCATGTCGTCGCGCTTTCGCAGTTCGACGCCGTGCAACGCGC
CTTTTCCGAGCTGCTTCTCAACGTGGGTAACCTCAACATACGCCTTTGTC
TGGGCAGGCTGCATGATGCCTGCGCTTCCGTTCTTATGCAGCAGATGGTC
ACCCTGCGTATGATTGCCGCCTCTCCGTTTCAGAACGAGTCACTCACCCA
TTTCAACCGCCTCGCGCTCACGTTGGGTGCCTTTGTCATGGAGTGTGTGT
CCGTGTTGCAGACAATCACCACATGTCTGTCCGCTTTGTCTACCGGCTTA
CGCGACGCGCAGCATTCCCTCAACAGCACGCTCAATACCAAGCAGCAGAC
GCTGTCCACACTTCGCGTGCAAAACGTGTCTATCATGCAGCAACAATCGC
AATTGCTGCAATCACTCTCCGAATATGCCGAACAATACTCCCAGTTACAA
GCCTCGCAACAACGCATATCGCGCCGACAAACGCTGTGTAACATCTTTTC
CTTTGTGCCCTCCGTGGATCAGTCGCTGCAATCCTCGTACAATTTGCACC
TTTTTGAGCCCGTTTCCAACATCATTAGCGACGTCAACGACCAGTACAAC
CAATCGCGTCGCGAAACCGAACACGTATTGACCATGAAGCGCCGTCAACG
AGAGCGCAATAGGAACCTTGTCAACGAACTTGCCGAATGCGAACGACATA
TTCAACAAGCAGCCGAGCACATTAACGACTGCAATCAACAACTGCACCAC
GTCACTGAGGCCATTCAATCAGCGCAGACAATCGGCGTGCTTGCTCTGCG
AGTCATCACCGCCTTCAAATCGATTGCACACGCATGCCAAACGCTTTCAT
CCTCTCAACTCCCCACGCTTATCGATCTCACTTGCTCTCCATCTTCGGAA
AAACCGGCCATTCGGCAAGGCGACCTATCTGTCTTGGATGCTTCACAGCT
TTGTACACAGCCAACATGGACCATGAAAACTGCTGTCAAACAAAAGTTTG
TGCAGTATTATGCGCAGTGGGTTGCTTTGAAACACTGTTGTCAACAATGC
TTGAAACAGCTTTCTGATGAACAACATCAAACGATACCGCAGCTTTGTTG
GGATGCGTTTGATAATGAAGCTTCTGCACCAGATGTACCGTCTTTGTTTC
CGTCTTCCAGTGCTGTTACCGAGCACCAACAAAGCTCTGTCGCAATCGAG
TCGCACGATGCAGAACATCTTTCCGTAGCTAGCACATAA

Coding sequence (CDS) from alignment at tig00000120_pilon:129947..131335+

>Ggra3098.t1 ID=Ggra3098.t1|Name=Ggra3098.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000120_pilon:129947..131335+ (Gracilaria gracilis GNS1m male)
ATGAATCATCAACACGAGCAGCAGACGGTGCTGCTTGACGGCGTCACGTA
CTCGCTGGACGTCGCACCGCCCGTCGATTCGCCGCTCGTGCAGCATCATT
TGTCCACGCTGCCCGCGGACGTGCCGCTCTTGTCGCAGCCGGTTGGGCAG
CTTTCGAGGCATGTCGTCGCGCTTTCGCAGTTCGACGCCGTGCAACGCGC
CTTTTCCGAGCTGCTTCTCAACGTGGGTAACCTCAACATACGCCTTTGTC
TGGGCAGGCTGCATGATGCCTGCGCTTCCGTTCTTATGCAGCAGATGGTC
ACCCTGCGTATGATTGCCGCCTCTCCGTTTCAGAACGAGTCACTCACCCA
TTTCAACCGCCTCGCGCTCACGTTGGGTGCCTTTGTCATGGAGTGTGTGT
CCGTGTTGCAGACAATCACCACATGTCTGTCCGCTTTGTCTACCGGCTTA
CGCGACGCGCAGCATTCCCTCAACAGCACGCTCAATACCAAGCAGCAGAC
GCTGTCCACACTTCGCGTGCAAAACGTGTCTATCATGCAGCAACAATCGC
AATTGCTGCAATCACTCTCCGAATATGCCGAACAATACTCCCAGTTACAA
GCCTCGCAACAACGCATATCGCGCCGACAAACGCTGTGTAACATCTTTTC
CTTTGTGCCCTCCGTGGATCAGTCGCTGCAATCCTCGTACAATTTGCACC
TTTTTGAGCCCGTTTCCAACATCATTAGCGACGTCAACGACCAGTACAAC
CAATCGCGTCGCGAAACCGAACACGTATTGACCATGAAGCGCCGTCAACG
AGAGCGCAATAGGAACCTTGTCAACGAACTTGCCGAATGCGAACGACATA
TTCAACAAGCAGCCGAGCACATTAACGACTGCAATCAACAACTGCACCAC
GTCACTGAGGCCATTCAATCAGCGCAGACAATCGGCGTGCTTGCTCTGCG
AGTCATCACCGCCTTCAAATCGATTGCACACGCATGCCAAACGCTTTCAT
CCTCTCAACTCCCCACGCTTATCGATCTCACTTGCTCTCCATCTTCGGAA
AAACCGGCCATTCGGCAAGGCGACCTATCTGTCTTGGATGCTTCACAGCT
TTGTACACAGCCAACATGGACCATGAAAACTGCTGTCAAACAAAAGTTTG
TGCAGTATTATGCGCAGTGGGTTGCTTTGAAACACTGTTGTCAACAATGC
TTGAAACAGCTTTCTGATGAACAACATCAAACGATACCGCAGCTTTGTTG
GGATGCGTTTGATAATGAAGCTTCTGCACCAGATGTACCGTCTTTGTTTC
CGTCTTCCAGTGCTGTTACCGAGCACCAACAAAGCTCTGTCGCAATCGAG
TCGCACGATGCAGAACATCTTTCCGTAGCTAGCACATAA