Ggra8578.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8578.t1
Unique NameGgra8578.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:105796..106743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007142512.1
PFAMsWD40
Max annot lvl35493|Streptophyta
KEGG koko:K14791
GOsGO:0001932,GO:0001933,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0006325,GO:0006355,GO:0006356,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0012505,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0033135,GO:0033137,GO:0033139,GO:0033140,GO:0034770,GO:0034773,GO:0034968,GO:0035064,GO:0036211,GO:0042325,GO:0042326,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045936,GO:0045943,GO:0046425,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:0140034,GO:1901564,GO:1901836,GO:1901838,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:1904892,GO:1990889,GO:2000112,GO:2000736,GO:2000738,GO:2001141
Evalue3.02e-43
EggNOG OGsKOG0270@1|root,KOG0270@2759|Eukaryota,37HSM@33090|Viridiplantae,3GET6@35493|Streptophyta,4JHXV@91835|fabids
DescriptionPeriodic tryptophan protein 1 homolog
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8578Ggra8578Gracilaria gracilis GNS1m malegenetig00000116_pilon 105796..106743 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8578.t1.stop1Ggra8578.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000116_pilon 105796..105798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8578.t1.CDS1Ggra8578.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000116_pilon 105796..106743 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8578.t1.exon1Ggra8578.t1.exon1Gracilaria gracilis GNS1m maleexontig00000116_pilon 105796..106743 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8578.t1.start1Ggra8578.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000116_pilon 106741..106743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8578.t1Ggra8578.t1Gracilaria gracilis GNS1m malepolypeptidetig00000116_pilon 105796..106743 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8578.t1 ID=Ggra8578.t1|Name=Ggra8578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MLVDLTWVPRGVAKTKLPKGVERDVEMGSSEDVVKNSEMNEIENESEVDM
GEVLANDLDNLSFYKQEEKDPYLSSDSKANNLFDEDELDDIVIRSKDSIV
ISVHSGEEISLLMTYVFDDNPDESDDEEASAYEPHTYFHHGLVLPTLPLC
AAHTSLEVNEEIANLVAVGMFTPGIEIWDVDQVNNLEPVVSLGGYGSKSV
VKNAMVAASKVQGTGKRKRKKKPKLKLRDGSHQDAVMSLSWNSIQKKYLA
SGSADQRVKVWGIESAYCASTFSHHSDKVQAVSFHPSEAEVLLTGSFDKT
VQILDARDPGKRKQW*
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spliced messenger RNA

>Ggra8578.t1 ID=Ggra8578.t1|Name=Ggra8578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000116_pilon:105796..106743- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTGGATTTGACATGGGTTCCCCGCGGGGTAGCTAAAACCAAGCT
ACCGAAAGGTGTGGAACGAGATGTCGAAATGGGTTCCTCAGAAGATGTAG
TCAAGAACTCAGAGATGAATGAAATCGAAAACGAATCAGAGGTAGACATG
GGTGAAGTGCTTGCGAACGATTTGGATAACCTCTCTTTTTATAAGCAGGA
AGAAAAAGACCCATACCTCTCATCTGATTCCAAGGCAAATAATCTTTTTG
ACGAGGACGAACTCGATGATATAGTGATTCGATCTAAAGATTCCATCGTT
ATTTCTGTACATTCCGGAGAAGAAATTTCCCTCCTAATGACTTACGTCTT
TGATGACAATCCGGATGAATCCGATGACGAAGAAGCTAGTGCCTACGAGC
CTCATACATATTTTCACCACGGTCTCGTTCTTCCAACTCTGCCGCTTTGT
GCTGCTCACACTAGCCTTGAAGTGAACGAAGAAATCGCAAATCTCGTCGC
TGTTGGTATGTTTACCCCGGGGATAGAGATCTGGGACGTTGATCAGGTTA
ACAATTTAGAACCAGTTGTCTCACTTGGTGGATATGGGTCAAAGTCTGTT
GTTAAGAATGCTATGGTAGCAGCGAGCAAAGTACAAGGAACAGGGAAGAG
GAAAAGAAAGAAGAAGCCAAAGCTCAAGCTTCGAGATGGCTCGCACCAAG
ACGCTGTCATGAGTCTCTCATGGAATTCTATCCAAAAGAAATATCTTGCA
AGTGGTTCCGCCGATCAAAGGGTCAAAGTCTGGGGTATTGAGTCTGCTTA
CTGTGCATCTACATTTTCACACCACAGTGACAAAGTACAGGCAGTTTCGT
TTCATCCATCAGAAGCCGAAGTACTTCTGACAGGATCCTTTGATAAGACC
GTACAAATACTGGATGCTAGAGATCCAGGAAAACGAAAGCAATGGTAG
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protein sequence of Ggra8578.t1

>Ggra8578.t1 ID=Ggra8578.t1|Name=Ggra8578.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MLVDLTWVPRGVAKTKLPKGVERDVEMGSSEDVVKNSEMNEIENESEVDM
GEVLANDLDNLSFYKQEEKDPYLSSDSKANNLFDEDELDDIVIRSKDSIV
ISVHSGEEISLLMTYVFDDNPDESDDEEASAYEPHTYFHHGLVLPTLPLC
AAHTSLEVNEEIANLVAVGMFTPGIEIWDVDQVNNLEPVVSLGGYGSKSV
VKNAMVAASKVQGTGKRKRKKKPKLKLRDGSHQDAVMSLSWNSIQKKYLA
SGSADQRVKVWGIESAYCASTFSHHSDKVQAVSFHPSEAEVLLTGSFDKT
VQILDARDPGKRKQW*
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mRNA from alignment at tig00000116_pilon:105796..106743-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8578.t1 ID=Ggra8578.t1|Name=Ggra8578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000116_pilon:105796..106743- (Gracilaria gracilis GNS1m male)
ATGCTCGTGGATTTGACATGGGTTCCCCGCGGGGTAGCTAAAACCAAGCT
ACCGAAAGGTGTGGAACGAGATGTCGAAATGGGTTCCTCAGAAGATGTAG
TCAAGAACTCAGAGATGAATGAAATCGAAAACGAATCAGAGGTAGACATG
GGTGAAGTGCTTGCGAACGATTTGGATAACCTCTCTTTTTATAAGCAGGA
AGAAAAAGACCCATACCTCTCATCTGATTCCAAGGCAAATAATCTTTTTG
ACGAGGACGAACTCGATGATATAGTGATTCGATCTAAAGATTCCATCGTT
ATTTCTGTACATTCCGGAGAAGAAATTTCCCTCCTAATGACTTACGTCTT
TGATGACAATCCGGATGAATCCGATGACGAAGAAGCTAGTGCCTACGAGC
CTCATACATATTTTCACCACGGTCTCGTTCTTCCAACTCTGCCGCTTTGT
GCTGCTCACACTAGCCTTGAAGTGAACGAAGAAATCGCAAATCTCGTCGC
TGTTGGTATGTTTACCCCGGGGATAGAGATCTGGGACGTTGATCAGGTTA
ACAATTTAGAACCAGTTGTCTCACTTGGTGGATATGGGTCAAAGTCTGTT
GTTAAGAATGCTATGGTAGCAGCGAGCAAAGTACAAGGAACAGGGAAGAG
GAAAAGAAAGAAGAAGCCAAAGCTCAAGCTTCGAGATGGCTCGCACCAAG
ACGCTGTCATGAGTCTCTCATGGAATTCTATCCAAAAGAAATATCTTGCA
AGTGGTTCCGCCGATCAAAGGGTCAAAGTCTGGGGTATTGAGTCTGCTTA
CTGTGCATCTACATTTTCACACCACAGTGACAAAGTACAGGCAGTTTCGT
TTCATCCATCAGAAGCCGAAGTACTTCTGACAGGATCCTTTGATAAGACC
GTACAAATACTGGATGCTAGAGATCCAGGAAAACGAAAGCAATGGTAG
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Coding sequence (CDS) from alignment at tig00000116_pilon:105796..106743-

>Ggra8578.t1 ID=Ggra8578.t1|Name=Ggra8578.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000116_pilon:105796..106743- (Gracilaria gracilis GNS1m male)
ATGCTCGTGGATTTGACATGGGTTCCCCGCGGGGTAGCTAAAACCAAGCT
ACCGAAAGGTGTGGAACGAGATGTCGAAATGGGTTCCTCAGAAGATGTAG
TCAAGAACTCAGAGATGAATGAAATCGAAAACGAATCAGAGGTAGACATG
GGTGAAGTGCTTGCGAACGATTTGGATAACCTCTCTTTTTATAAGCAGGA
AGAAAAAGACCCATACCTCTCATCTGATTCCAAGGCAAATAATCTTTTTG
ACGAGGACGAACTCGATGATATAGTGATTCGATCTAAAGATTCCATCGTT
ATTTCTGTACATTCCGGAGAAGAAATTTCCCTCCTAATGACTTACGTCTT
TGATGACAATCCGGATGAATCCGATGACGAAGAAGCTAGTGCCTACGAGC
CTCATACATATTTTCACCACGGTCTCGTTCTTCCAACTCTGCCGCTTTGT
GCTGCTCACACTAGCCTTGAAGTGAACGAAGAAATCGCAAATCTCGTCGC
TGTTGGTATGTTTACCCCGGGGATAGAGATCTGGGACGTTGATCAGGTTA
ACAATTTAGAACCAGTTGTCTCACTTGGTGGATATGGGTCAAAGTCTGTT
GTTAAGAATGCTATGGTAGCAGCGAGCAAAGTACAAGGAACAGGGAAGAG
GAAAAGAAAGAAGAAGCCAAAGCTCAAGCTTCGAGATGGCTCGCACCAAG
ACGCTGTCATGAGTCTCTCATGGAATTCTATCCAAAAGAAATATCTTGCA
AGTGGTTCCGCCGATCAAAGGGTCAAAGTCTGGGGTATTGAGTCTGCTTA
CTGTGCATCTACATTTTCACACCACAGTGACAAAGTACAGGCAGTTTCGT
TTCATCCATCAGAAGCCGAAGTACTTCTGACAGGATCCTTTGATAAGACC
GTACAAATACTGGATGCTAGAGATCCAGGAAAACGAAAGCAATGGTAG
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