Ggra6940.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6940.t1
Unique NameGgra6940.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:184411..185547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708602.1
PFAMsPALP
Max annot lvl2759|Eukaryota
Evalue4.1e-77
EggNOG OGsCOG1171@1|root,KOG1250@2759|Eukaryota
DescriptionL-threonine ammonia-lyase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6940Ggra6940Gracilaria gracilis GNS1m malegenetig00000115_pilon 184411..185547 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6940.t1.start1Ggra6940.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 184411..184413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6940.t1.CDS1Ggra6940.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 184411..185547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6940.t1.exon1Ggra6940.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 184411..185547 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6940.t1.stop1Ggra6940.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 185545..185547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6940.t1Ggra6940.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 184411..185547 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6940.t1 ID=Ggra6940.t1|Name=Ggra6940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=379bp
MLDKLPQPGIFCFSAQHDGGKHGTGGGTSDFMTTLSWNDQLSCAKYFCQL
CVSAHKTLQAHRMRNPAALHLTPMLRALSLGRSVFVKLESEQVTNSFKVR
GAINCIHNSRASHVVTASTGNHALAVVHAVNLLALQGTIFLPISVSPSKL
GAITRFAEGGKCEIRLIGTDCLQAELAASAFAKERKAVYVSPYNDELVIA
GQGTVGVEILEYFARSHPSFAGRQKCCYVTVGGGGLIAGVAAVLKASQPG
QWRIVGCLPQNSAVMFQCIKAGRVVEAPCKETLSDGSAGQIEQNTITYEA
CSHLVDAWAIVSEEDIRRAMCDVLAFEHKLLEGAAGVAVAGMRRDSEWRG
SNNCVASVVIACGGNVSVDTIRKISEGR*
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spliced messenger RNA

>Ggra6940.t1 ID=Ggra6940.t1|Name=Ggra6940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000115_pilon:184411..185547+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGACAAGCTCCCACAGCCCGGCATTTTCTGTTTTTCCGCTCAGCA
TGACGGCGGAAAGCATGGCACTGGCGGCGGCACATCAGACTTTATGACCA
CGCTGTCGTGGAATGACCAGCTCAGCTGCGCCAAGTACTTTTGCCAATTG
TGTGTTTCCGCCCACAAGACGTTGCAGGCTCATCGCATGCGCAATCCCGC
TGCGCTGCACCTCACGCCCATGCTGCGCGCTCTTTCGCTCGGCCGATCAG
TTTTTGTCAAACTGGAAAGCGAGCAGGTTACCAACTCATTCAAGGTACGT
GGAGCCATCAACTGCATCCACAACTCTCGAGCAAGCCATGTCGTCACAGC
CTCAACGGGAAACCACGCGCTGGCCGTCGTGCACGCCGTCAATCTGCTTG
CATTGCAGGGCACCATTTTTCTTCCGATCAGTGTGTCGCCAAGCAAGCTT
GGTGCCATAACACGTTTCGCGGAAGGAGGCAAGTGTGAGATTCGACTCAT
AGGCACTGATTGTCTTCAAGCCGAACTAGCAGCCTCAGCCTTTGCAAAGG
AGCGTAAAGCTGTCTATGTGTCACCGTATAACGATGAACTGGTCATCGCT
GGCCAAGGAACAGTGGGCGTGGAAATCCTAGAGTACTTTGCCCGATCACA
TCCATCCTTTGCTGGTCGTCAAAAGTGCTGCTATGTTACCGTCGGTGGAG
GCGGACTCATCGCAGGTGTTGCCGCAGTGCTCAAGGCCAGCCAACCGGGA
CAATGGCGTATCGTAGGCTGCTTACCTCAGAATTCCGCTGTCATGTTCCA
ATGTATAAAGGCTGGTCGAGTAGTTGAGGCTCCGTGCAAAGAAACGCTCT
CCGATGGAAGTGCCGGTCAAATTGAACAAAACACCATCACGTATGAGGCA
TGCTCTCATCTGGTTGACGCCTGGGCAATTGTGTCCGAAGAAGATATCAG
GCGCGCAATGTGTGACGTTCTTGCCTTCGAGCACAAGCTCTTGGAAGGAG
CCGCTGGCGTGGCTGTTGCTGGTATGCGGCGAGACTCCGAATGGCGGGGC
TCGAACAATTGCGTCGCTTCCGTAGTCATTGCTTGTGGTGGTAACGTGAG
CGTTGACACAATTCGCAAAATCAGTGAAGGGCGATAG
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protein sequence of Ggra6940.t1

>Ggra6940.t1 ID=Ggra6940.t1|Name=Ggra6940.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MLDKLPQPGIFCFSAQHDGGKHGTGGGTSDFMTTLSWNDQLSCAKYFCQL
CVSAHKTLQAHRMRNPAALHLTPMLRALSLGRSVFVKLESEQVTNSFKVR
GAINCIHNSRASHVVTASTGNHALAVVHAVNLLALQGTIFLPISVSPSKL
GAITRFAEGGKCEIRLIGTDCLQAELAASAFAKERKAVYVSPYNDELVIA
GQGTVGVEILEYFARSHPSFAGRQKCCYVTVGGGGLIAGVAAVLKASQPG
QWRIVGCLPQNSAVMFQCIKAGRVVEAPCKETLSDGSAGQIEQNTITYEA
CSHLVDAWAIVSEEDIRRAMCDVLAFEHKLLEGAAGVAVAGMRRDSEWRG
SNNCVASVVIACGGNVSVDTIRKISEGR*
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mRNA from alignment at tig00000115_pilon:184411..185547+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6940.t1 ID=Ggra6940.t1|Name=Ggra6940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000115_pilon:184411..185547+ (Gracilaria gracilis GNS1m male)
ATGCTTGACAAGCTCCCACAGCCCGGCATTTTCTGTTTTTCCGCTCAGCA
TGACGGCGGAAAGCATGGCACTGGCGGCGGCACATCAGACTTTATGACCA
CGCTGTCGTGGAATGACCAGCTCAGCTGCGCCAAGTACTTTTGCCAATTG
TGTGTTTCCGCCCACAAGACGTTGCAGGCTCATCGCATGCGCAATCCCGC
TGCGCTGCACCTCACGCCCATGCTGCGCGCTCTTTCGCTCGGCCGATCAG
TTTTTGTCAAACTGGAAAGCGAGCAGGTTACCAACTCATTCAAGGTACGT
GGAGCCATCAACTGCATCCACAACTCTCGAGCAAGCCATGTCGTCACAGC
CTCAACGGGAAACCACGCGCTGGCCGTCGTGCACGCCGTCAATCTGCTTG
CATTGCAGGGCACCATTTTTCTTCCGATCAGTGTGTCGCCAAGCAAGCTT
GGTGCCATAACACGTTTCGCGGAAGGAGGCAAGTGTGAGATTCGACTCAT
AGGCACTGATTGTCTTCAAGCCGAACTAGCAGCCTCAGCCTTTGCAAAGG
AGCGTAAAGCTGTCTATGTGTCACCGTATAACGATGAACTGGTCATCGCT
GGCCAAGGAACAGTGGGCGTGGAAATCCTAGAGTACTTTGCCCGATCACA
TCCATCCTTTGCTGGTCGTCAAAAGTGCTGCTATGTTACCGTCGGTGGAG
GCGGACTCATCGCAGGTGTTGCCGCAGTGCTCAAGGCCAGCCAACCGGGA
CAATGGCGTATCGTAGGCTGCTTACCTCAGAATTCCGCTGTCATGTTCCA
ATGTATAAAGGCTGGTCGAGTAGTTGAGGCTCCGTGCAAAGAAACGCTCT
CCGATGGAAGTGCCGGTCAAATTGAACAAAACACCATCACGTATGAGGCA
TGCTCTCATCTGGTTGACGCCTGGGCAATTGTGTCCGAAGAAGATATCAG
GCGCGCAATGTGTGACGTTCTTGCCTTCGAGCACAAGCTCTTGGAAGGAG
CCGCTGGCGTGGCTGTTGCTGGTATGCGGCGAGACTCCGAATGGCGGGGC
TCGAACAATTGCGTCGCTTCCGTAGTCATTGCTTGTGGTGGTAACGTGAG
CGTTGACACAATTCGCAAAATCAGTGAAGGGCGATAG
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Coding sequence (CDS) from alignment at tig00000115_pilon:184411..185547+

>Ggra6940.t1 ID=Ggra6940.t1|Name=Ggra6940.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000115_pilon:184411..185547+ (Gracilaria gracilis GNS1m male)
ATGCTTGACAAGCTCCCACAGCCCGGCATTTTCTGTTTTTCCGCTCAGCA
TGACGGCGGAAAGCATGGCACTGGCGGCGGCACATCAGACTTTATGACCA
CGCTGTCGTGGAATGACCAGCTCAGCTGCGCCAAGTACTTTTGCCAATTG
TGTGTTTCCGCCCACAAGACGTTGCAGGCTCATCGCATGCGCAATCCCGC
TGCGCTGCACCTCACGCCCATGCTGCGCGCTCTTTCGCTCGGCCGATCAG
TTTTTGTCAAACTGGAAAGCGAGCAGGTTACCAACTCATTCAAGGTACGT
GGAGCCATCAACTGCATCCACAACTCTCGAGCAAGCCATGTCGTCACAGC
CTCAACGGGAAACCACGCGCTGGCCGTCGTGCACGCCGTCAATCTGCTTG
CATTGCAGGGCACCATTTTTCTTCCGATCAGTGTGTCGCCAAGCAAGCTT
GGTGCCATAACACGTTTCGCGGAAGGAGGCAAGTGTGAGATTCGACTCAT
AGGCACTGATTGTCTTCAAGCCGAACTAGCAGCCTCAGCCTTTGCAAAGG
AGCGTAAAGCTGTCTATGTGTCACCGTATAACGATGAACTGGTCATCGCT
GGCCAAGGAACAGTGGGCGTGGAAATCCTAGAGTACTTTGCCCGATCACA
TCCATCCTTTGCTGGTCGTCAAAAGTGCTGCTATGTTACCGTCGGTGGAG
GCGGACTCATCGCAGGTGTTGCCGCAGTGCTCAAGGCCAGCCAACCGGGA
CAATGGCGTATCGTAGGCTGCTTACCTCAGAATTCCGCTGTCATGTTCCA
ATGTATAAAGGCTGGTCGAGTAGTTGAGGCTCCGTGCAAAGAAACGCTCT
CCGATGGAAGTGCCGGTCAAATTGAACAAAACACCATCACGTATGAGGCA
TGCTCTCATCTGGTTGACGCCTGGGCAATTGTGTCCGAAGAAGATATCAG
GCGCGCAATGTGTGACGTTCTTGCCTTCGAGCACAAGCTCTTGGAAGGAG
CCGCTGGCGTGGCTGTTGCTGGTATGCGGCGAGACTCCGAATGGCGGGGC
TCGAACAATTGCGTCGCTTCCGTAGTCATTGCTTGTGGTGGTAACGTGAG
CGTTGACACAATTCGCAAAATCAGTGAAGGGCGATAG
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