Ggra6948.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6948.t1
Unique NameGgra6948.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:280035..281303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_06001T0
PFAMsLPMO_10
Max annot lvl2759|Eukaryota
Evalue3.4e-14
EggNOG OGs28MU0@1|root,2QUC9@2759|Eukaryota
DescriptionLytic polysaccharide mono-oxygenase, cellulose-degrading
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6948Ggra6948Gracilaria gracilis GNS1m malegenetig00000115_pilon 280035..281303 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6948.t1.stop1Ggra6948.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 280035..280037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6948.t1.CDS1Ggra6948.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 280035..281303 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6948.t1.exon1Ggra6948.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 280035..281303 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6948.t1.start1Ggra6948.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 281301..281303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6948.t1Ggra6948.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 280035..281303 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6948.t1 ID=Ggra6948.t1|Name=Ggra6948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MSLSALWLSTFSALFTLIVAHGCMSHPNQRGALNRLPHIPHVVDYRAPKD
YWLFFPAGDKASSPGSALQSQKYAAGPGGWTPYNPYNPSFRWRYGVCGDR
VDGPQHHLRGGRYYHGGRIVATYTQGDVVGVGMSIITHHNGYIEMHLCDV
SKCGGEISRQCFLKGACMQLKRAYQPECESGKSTHCGPTDKRYPGRWYLP
CRSGRGWDNYRPPYATFRLPKHFNCKHCVLQWYWVTANTCNPPGVLDYFD
GPNRPNWGTCSGQGGARGGVTRNKPPCGGHSFPEEYMQCADIRIDSTSRA
RNAQLGDGGPTPSPTPPPHGSLAKLVLWADGSQSRELISGTAINIGMYSR
IGVEAIPVPGSGVSAVEFYMDNKKVNVDTWAPFFLEGKNRGTWIYNIPVG
RYVRFAAKANNEWITVDVKFFK*
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spliced messenger RNA

>Ggra6948.t1 ID=Ggra6948.t1|Name=Ggra6948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000115_pilon:280035..281303- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTGTCGGCACTTTGGCTTTCCACATTCTCCGCCCTCTTCACACT
CATCGTTGCACATGGTTGTATGAGTCACCCCAATCAAAGAGGCGCTCTCA
ATCGTCTTCCACACATACCGCACGTTGTTGACTACCGCGCCCCAAAGGAC
TACTGGCTCTTCTTTCCAGCCGGTGACAAAGCCTCCTCGCCTGGAAGCGC
TCTTCAAAGCCAGAAGTACGCCGCTGGTCCCGGCGGGTGGACACCGTATA
ATCCATACAACCCTTCCTTTCGATGGCGATATGGTGTGTGCGGCGATCGC
GTCGATGGGCCGCAGCACCATTTACGAGGTGGAAGGTATTACCACGGTGG
CCGCATCGTGGCTACATACACTCAAGGTGATGTTGTTGGAGTTGGCATGT
CCATAATCACTCACCACAATGGTTACATCGAAATGCACCTCTGCGACGTC
TCCAAATGTGGTGGCGAGATTAGCCGTCAGTGCTTCCTCAAAGGTGCATG
CATGCAGCTCAAGCGCGCGTACCAGCCAGAATGTGAAAGTGGCAAGAGTA
CGCATTGTGGGCCCACAGACAAACGCTATCCAGGTCGCTGGTATCTCCCA
TGTCGTTCTGGTCGCGGATGGGACAATTATCGTCCGCCCTACGCTACTTT
TCGTCTTCCCAAGCATTTCAACTGCAAACACTGCGTTTTGCAATGGTACT
GGGTTACTGCAAACACATGTAATCCACCAGGAGTGCTGGACTACTTTGAT
GGACCCAACCGTCCCAACTGGGGTACATGTTCCGGACAGGGCGGAGCTCG
AGGCGGAGTAACTCGCAACAAACCCCCATGTGGTGGCCATAGCTTCCCCG
AAGAATATATGCAGTGTGCAGACATCAGGATCGACTCCACATCCCGCGCA
CGGAATGCACAGCTCGGCGACGGTGGACCCACTCCGTCTCCCACTCCGCC
ACCTCACGGGAGCCTCGCAAAGCTTGTGCTTTGGGCTGATGGATCACAGT
CTCGTGAACTGATTTCAGGCACAGCGATAAACATCGGTATGTATTCGCGT
ATAGGAGTGGAAGCGATTCCAGTTCCAGGATCTGGTGTGAGTGCTGTTGA
GTTCTACATGGATAACAAGAAAGTGAACGTGGATACCTGGGCGCCATTCT
TTTTGGAAGGGAAGAATCGTGGTACATGGATATACAATATTCCAGTTGGT
CGATATGTTCGTTTCGCGGCTAAAGCAAACAATGAATGGATCACGGTGGA
TGTCAAATTCTTCAAATGA
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protein sequence of Ggra6948.t1

>Ggra6948.t1 ID=Ggra6948.t1|Name=Ggra6948.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MSLSALWLSTFSALFTLIVAHGCMSHPNQRGALNRLPHIPHVVDYRAPKD
YWLFFPAGDKASSPGSALQSQKYAAGPGGWTPYNPYNPSFRWRYGVCGDR
VDGPQHHLRGGRYYHGGRIVATYTQGDVVGVGMSIITHHNGYIEMHLCDV
SKCGGEISRQCFLKGACMQLKRAYQPECESGKSTHCGPTDKRYPGRWYLP
CRSGRGWDNYRPPYATFRLPKHFNCKHCVLQWYWVTANTCNPPGVLDYFD
GPNRPNWGTCSGQGGARGGVTRNKPPCGGHSFPEEYMQCADIRIDSTSRA
RNAQLGDGGPTPSPTPPPHGSLAKLVLWADGSQSRELISGTAINIGMYSR
IGVEAIPVPGSGVSAVEFYMDNKKVNVDTWAPFFLEGKNRGTWIYNIPVG
RYVRFAAKANNEWITVDVKFFK*
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mRNA from alignment at tig00000115_pilon:280035..281303-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6948.t1 ID=Ggra6948.t1|Name=Ggra6948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000115_pilon:280035..281303- (Gracilaria gracilis GNS1m male)
ATGAGTCTGTCGGCACTTTGGCTTTCCACATTCTCCGCCCTCTTCACACT
CATCGTTGCACATGGTTGTATGAGTCACCCCAATCAAAGAGGCGCTCTCA
ATCGTCTTCCACACATACCGCACGTTGTTGACTACCGCGCCCCAAAGGAC
TACTGGCTCTTCTTTCCAGCCGGTGACAAAGCCTCCTCGCCTGGAAGCGC
TCTTCAAAGCCAGAAGTACGCCGCTGGTCCCGGCGGGTGGACACCGTATA
ATCCATACAACCCTTCCTTTCGATGGCGATATGGTGTGTGCGGCGATCGC
GTCGATGGGCCGCAGCACCATTTACGAGGTGGAAGGTATTACCACGGTGG
CCGCATCGTGGCTACATACACTCAAGGTGATGTTGTTGGAGTTGGCATGT
CCATAATCACTCACCACAATGGTTACATCGAAATGCACCTCTGCGACGTC
TCCAAATGTGGTGGCGAGATTAGCCGTCAGTGCTTCCTCAAAGGTGCATG
CATGCAGCTCAAGCGCGCGTACCAGCCAGAATGTGAAAGTGGCAAGAGTA
CGCATTGTGGGCCCACAGACAAACGCTATCCAGGTCGCTGGTATCTCCCA
TGTCGTTCTGGTCGCGGATGGGACAATTATCGTCCGCCCTACGCTACTTT
TCGTCTTCCCAAGCATTTCAACTGCAAACACTGCGTTTTGCAATGGTACT
GGGTTACTGCAAACACATGTAATCCACCAGGAGTGCTGGACTACTTTGAT
GGACCCAACCGTCCCAACTGGGGTACATGTTCCGGACAGGGCGGAGCTCG
AGGCGGAGTAACTCGCAACAAACCCCCATGTGGTGGCCATAGCTTCCCCG
AAGAATATATGCAGTGTGCAGACATCAGGATCGACTCCACATCCCGCGCA
CGGAATGCACAGCTCGGCGACGGTGGACCCACTCCGTCTCCCACTCCGCC
ACCTCACGGGAGCCTCGCAAAGCTTGTGCTTTGGGCTGATGGATCACAGT
CTCGTGAACTGATTTCAGGCACAGCGATAAACATCGGTATGTATTCGCGT
ATAGGAGTGGAAGCGATTCCAGTTCCAGGATCTGGTGTGAGTGCTGTTGA
GTTCTACATGGATAACAAGAAAGTGAACGTGGATACCTGGGCGCCATTCT
TTTTGGAAGGGAAGAATCGTGGTACATGGATATACAATATTCCAGTTGGT
CGATATGTTCGTTTCGCGGCTAAAGCAAACAATGAATGGATCACGGTGGA
TGTCAAATTCTTCAAATGA
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Coding sequence (CDS) from alignment at tig00000115_pilon:280035..281303-

>Ggra6948.t1 ID=Ggra6948.t1|Name=Ggra6948.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000115_pilon:280035..281303- (Gracilaria gracilis GNS1m male)
ATGAGTCTGTCGGCACTTTGGCTTTCCACATTCTCCGCCCTCTTCACACT
CATCGTTGCACATGGTTGTATGAGTCACCCCAATCAAAGAGGCGCTCTCA
ATCGTCTTCCACACATACCGCACGTTGTTGACTACCGCGCCCCAAAGGAC
TACTGGCTCTTCTTTCCAGCCGGTGACAAAGCCTCCTCGCCTGGAAGCGC
TCTTCAAAGCCAGAAGTACGCCGCTGGTCCCGGCGGGTGGACACCGTATA
ATCCATACAACCCTTCCTTTCGATGGCGATATGGTGTGTGCGGCGATCGC
GTCGATGGGCCGCAGCACCATTTACGAGGTGGAAGGTATTACCACGGTGG
CCGCATCGTGGCTACATACACTCAAGGTGATGTTGTTGGAGTTGGCATGT
CCATAATCACTCACCACAATGGTTACATCGAAATGCACCTCTGCGACGTC
TCCAAATGTGGTGGCGAGATTAGCCGTCAGTGCTTCCTCAAAGGTGCATG
CATGCAGCTCAAGCGCGCGTACCAGCCAGAATGTGAAAGTGGCAAGAGTA
CGCATTGTGGGCCCACAGACAAACGCTATCCAGGTCGCTGGTATCTCCCA
TGTCGTTCTGGTCGCGGATGGGACAATTATCGTCCGCCCTACGCTACTTT
TCGTCTTCCCAAGCATTTCAACTGCAAACACTGCGTTTTGCAATGGTACT
GGGTTACTGCAAACACATGTAATCCACCAGGAGTGCTGGACTACTTTGAT
GGACCCAACCGTCCCAACTGGGGTACATGTTCCGGACAGGGCGGAGCTCG
AGGCGGAGTAACTCGCAACAAACCCCCATGTGGTGGCCATAGCTTCCCCG
AAGAATATATGCAGTGTGCAGACATCAGGATCGACTCCACATCCCGCGCA
CGGAATGCACAGCTCGGCGACGGTGGACCCACTCCGTCTCCCACTCCGCC
ACCTCACGGGAGCCTCGCAAAGCTTGTGCTTTGGGCTGATGGATCACAGT
CTCGTGAACTGATTTCAGGCACAGCGATAAACATCGGTATGTATTCGCGT
ATAGGAGTGGAAGCGATTCCAGTTCCAGGATCTGGTGTGAGTGCTGTTGA
GTTCTACATGGATAACAAGAAAGTGAACGTGGATACCTGGGCGCCATTCT
TTTTGGAAGGGAAGAATCGTGGTACATGGATATACAATATTCCAGTTGGT
CGATATGTTCGTTTCGCGGCTAAAGCAAACAATGAATGGATCACGGTGGA
TGTCAAATTCTTCAAATGA
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