Ggra10109.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10109.t1
Unique NameGgra10109.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:142980..144383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10109Ggra10109Gracilaria gracilis GNS1m malegenetig00000113_pilon 142980..144383 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10109.t1.stop1Ggra10109.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 142980..142982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10109.t1.CDS1Ggra10109.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 142980..144383 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10109.t1.exon1Ggra10109.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 142980..144383 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10109.t1.start1Ggra10109.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 144381..144383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10109.t1Ggra10109.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 142980..144383 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10109.t1 ID=Ggra10109.t1|Name=Ggra10109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp
MSSPFLRRALTSSTPIGTLPLEVIRICFNLAIILYHAALCLAFCLSSSTP
ASALINDFSSVPAVLFQFVNFGFRYGVDAFFFLSGFCMAPKVKAFFRDGK
SGASLGSVSHYLLFRWLRLVPMYAIASMLLFAMGKPTCPSIPELLFYGNL
LVRFQDRCLAGGWSTLVDFQAHIAICVLAIACRSFRNLKVALCVCIVGCG
LARISKWYMCGFPFPPLMVNIQDMVRDSVRLRIFGETYHLRHGGFDSTSQ
DVVSRQSAYEAFSPLYFELVYRLTPFMVAFLVWCEMHQRGYVYRMVVRRK
AAAVLTALVLMLVEFWAVSHFHATLDTFNKFFGAMHVGFGSVFVLLGLGL
LVMVSCIVEGEEGGEAQLNGDGARRSDKQYVIRSWSRKLYALYQLHPIFM
RSMSWVGGEVNDGNFSHSVILVKGLMLYGCTLAFSIPVSAVEQVFLEMRS
LLKRWTKAASAKRAKEE*
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spliced messenger RNA

>Ggra10109.t1 ID=Ggra10109.t1|Name=Ggra10109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000113_pilon:142980..144383- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCCCCGTTCTTGAGACGTGCTCTCACGTCCAGTACGCCAATCGG
AACATTGCCTTTGGAAGTTATTCGGATATGCTTCAACCTTGCCATCATAT
TGTACCACGCGGCACTATGTTTGGCGTTTTGTCTTTCTTCTTCAACACCG
GCTTCTGCTCTGATAAACGACTTTTCGTCAGTGCCTGCGGTGTTATTTCA
GTTTGTCAACTTTGGGTTTCGATACGGGGTGGATGCGTTCTTCTTCCTGA
GTGGCTTCTGCATGGCGCCCAAAGTGAAAGCCTTTTTCAGAGATGGTAAA
AGCGGAGCATCGCTGGGCTCGGTTTCTCACTATCTACTGTTCAGATGGCT
CCGACTGGTTCCGATGTACGCGATCGCGTCGATGCTATTGTTTGCGATGG
GTAAACCTACATGCCCGAGTATTCCTGAACTGCTGTTTTATGGCAACTTG
TTGGTTAGATTCCAAGACCGATGCCTCGCCGGAGGATGGTCCACGCTGGT
CGATTTCCAAGCGCACATTGCGATATGTGTTTTGGCAATCGCGTGTCGCT
CGTTTCGCAACCTCAAAGTGGCACTGTGCGTTTGCATTGTGGGCTGCGGG
CTGGCTCGAATAAGCAAGTGGTACATGTGTGGTTTTCCATTTCCTCCACT
GATGGTGAACATTCAGGACATGGTGAGGGATTCAGTGAGGCTAAGAATAT
TCGGAGAAACATACCATTTACGTCATGGTGGTTTCGATTCTACCAGCCAG
GACGTCGTGAGTCGTCAAAGCGCGTATGAGGCATTTTCCCCCCTCTACTT
TGAGCTGGTGTACCGTTTGACGCCGTTCATGGTGGCGTTTCTCGTATGGT
GTGAGATGCACCAGAGAGGGTATGTGTACCGCATGGTAGTACGGCGGAAA
GCTGCGGCTGTTTTGACAGCACTAGTGCTGATGTTGGTGGAGTTTTGGGC
GGTGTCTCACTTCCATGCGACATTAGACACATTCAACAAGTTTTTCGGCG
CCATGCACGTGGGATTCGGGTCTGTGTTTGTTCTACTCGGTCTGGGACTT
TTGGTGATGGTGAGCTGCATTGTAGAAGGCGAGGAAGGCGGCGAAGCGCA
ACTGAATGGCGATGGAGCGAGACGCTCTGACAAGCAGTACGTGATACGGT
CTTGGAGCCGGAAGTTGTACGCGTTGTATCAGCTACACCCCATTTTTATG
CGGTCGATGTCGTGGGTGGGAGGTGAGGTGAACGATGGCAACTTTTCTCA
TTCGGTGATACTGGTGAAAGGGCTGATGCTGTATGGTTGTACGTTGGCCT
TCTCAATACCTGTGAGTGCAGTAGAGCAGGTGTTTTTGGAGATGAGAAGT
TTGTTGAAACGCTGGACGAAGGCGGCATCAGCGAAACGAGCCAAAGAGGA
GTAG
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protein sequence of Ggra10109.t1

>Ggra10109.t1 ID=Ggra10109.t1|Name=Ggra10109.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=468bp
MSSPFLRRALTSSTPIGTLPLEVIRICFNLAIILYHAALCLAFCLSSSTP
ASALINDFSSVPAVLFQFVNFGFRYGVDAFFFLSGFCMAPKVKAFFRDGK
SGASLGSVSHYLLFRWLRLVPMYAIASMLLFAMGKPTCPSIPELLFYGNL
LVRFQDRCLAGGWSTLVDFQAHIAICVLAIACRSFRNLKVALCVCIVGCG
LARISKWYMCGFPFPPLMVNIQDMVRDSVRLRIFGETYHLRHGGFDSTSQ
DVVSRQSAYEAFSPLYFELVYRLTPFMVAFLVWCEMHQRGYVYRMVVRRK
AAAVLTALVLMLVEFWAVSHFHATLDTFNKFFGAMHVGFGSVFVLLGLGL
LVMVSCIVEGEEGGEAQLNGDGARRSDKQYVIRSWSRKLYALYQLHPIFM
RSMSWVGGEVNDGNFSHSVILVKGLMLYGCTLAFSIPVSAVEQVFLEMRS
LLKRWTKAASAKRAKEE*
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mRNA from alignment at tig00000113_pilon:142980..144383-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10109.t1 ID=Ggra10109.t1|Name=Ggra10109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000113_pilon:142980..144383- (Gracilaria gracilis GNS1m male)
ATGAGTTCCCCGTTCTTGAGACGTGCTCTCACGTCCAGTACGCCAATCGG
AACATTGCCTTTGGAAGTTATTCGGATATGCTTCAACCTTGCCATCATAT
TGTACCACGCGGCACTATGTTTGGCGTTTTGTCTTTCTTCTTCAACACCG
GCTTCTGCTCTGATAAACGACTTTTCGTCAGTGCCTGCGGTGTTATTTCA
GTTTGTCAACTTTGGGTTTCGATACGGGGTGGATGCGTTCTTCTTCCTGA
GTGGCTTCTGCATGGCGCCCAAAGTGAAAGCCTTTTTCAGAGATGGTAAA
AGCGGAGCATCGCTGGGCTCGGTTTCTCACTATCTACTGTTCAGATGGCT
CCGACTGGTTCCGATGTACGCGATCGCGTCGATGCTATTGTTTGCGATGG
GTAAACCTACATGCCCGAGTATTCCTGAACTGCTGTTTTATGGCAACTTG
TTGGTTAGATTCCAAGACCGATGCCTCGCCGGAGGATGGTCCACGCTGGT
CGATTTCCAAGCGCACATTGCGATATGTGTTTTGGCAATCGCGTGTCGCT
CGTTTCGCAACCTCAAAGTGGCACTGTGCGTTTGCATTGTGGGCTGCGGG
CTGGCTCGAATAAGCAAGTGGTACATGTGTGGTTTTCCATTTCCTCCACT
GATGGTGAACATTCAGGACATGGTGAGGGATTCAGTGAGGCTAAGAATAT
TCGGAGAAACATACCATTTACGTCATGGTGGTTTCGATTCTACCAGCCAG
GACGTCGTGAGTCGTCAAAGCGCGTATGAGGCATTTTCCCCCCTCTACTT
TGAGCTGGTGTACCGTTTGACGCCGTTCATGGTGGCGTTTCTCGTATGGT
GTGAGATGCACCAGAGAGGGTATGTGTACCGCATGGTAGTACGGCGGAAA
GCTGCGGCTGTTTTGACAGCACTAGTGCTGATGTTGGTGGAGTTTTGGGC
GGTGTCTCACTTCCATGCGACATTAGACACATTCAACAAGTTTTTCGGCG
CCATGCACGTGGGATTCGGGTCTGTGTTTGTTCTACTCGGTCTGGGACTT
TTGGTGATGGTGAGCTGCATTGTAGAAGGCGAGGAAGGCGGCGAAGCGCA
ACTGAATGGCGATGGAGCGAGACGCTCTGACAAGCAGTACGTGATACGGT
CTTGGAGCCGGAAGTTGTACGCGTTGTATCAGCTACACCCCATTTTTATG
CGGTCGATGTCGTGGGTGGGAGGTGAGGTGAACGATGGCAACTTTTCTCA
TTCGGTGATACTGGTGAAAGGGCTGATGCTGTATGGTTGTACGTTGGCCT
TCTCAATACCTGTGAGTGCAGTAGAGCAGGTGTTTTTGGAGATGAGAAGT
TTGTTGAAACGCTGGACGAAGGCGGCATCAGCGAAACGAGCCAAAGAGGA
GTAG
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Coding sequence (CDS) from alignment at tig00000113_pilon:142980..144383-

>Ggra10109.t1 ID=Ggra10109.t1|Name=Ggra10109.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000113_pilon:142980..144383- (Gracilaria gracilis GNS1m male)
ATGAGTTCCCCGTTCTTGAGACGTGCTCTCACGTCCAGTACGCCAATCGG
AACATTGCCTTTGGAAGTTATTCGGATATGCTTCAACCTTGCCATCATAT
TGTACCACGCGGCACTATGTTTGGCGTTTTGTCTTTCTTCTTCAACACCG
GCTTCTGCTCTGATAAACGACTTTTCGTCAGTGCCTGCGGTGTTATTTCA
GTTTGTCAACTTTGGGTTTCGATACGGGGTGGATGCGTTCTTCTTCCTGA
GTGGCTTCTGCATGGCGCCCAAAGTGAAAGCCTTTTTCAGAGATGGTAAA
AGCGGAGCATCGCTGGGCTCGGTTTCTCACTATCTACTGTTCAGATGGCT
CCGACTGGTTCCGATGTACGCGATCGCGTCGATGCTATTGTTTGCGATGG
GTAAACCTACATGCCCGAGTATTCCTGAACTGCTGTTTTATGGCAACTTG
TTGGTTAGATTCCAAGACCGATGCCTCGCCGGAGGATGGTCCACGCTGGT
CGATTTCCAAGCGCACATTGCGATATGTGTTTTGGCAATCGCGTGTCGCT
CGTTTCGCAACCTCAAAGTGGCACTGTGCGTTTGCATTGTGGGCTGCGGG
CTGGCTCGAATAAGCAAGTGGTACATGTGTGGTTTTCCATTTCCTCCACT
GATGGTGAACATTCAGGACATGGTGAGGGATTCAGTGAGGCTAAGAATAT
TCGGAGAAACATACCATTTACGTCATGGTGGTTTCGATTCTACCAGCCAG
GACGTCGTGAGTCGTCAAAGCGCGTATGAGGCATTTTCCCCCCTCTACTT
TGAGCTGGTGTACCGTTTGACGCCGTTCATGGTGGCGTTTCTCGTATGGT
GTGAGATGCACCAGAGAGGGTATGTGTACCGCATGGTAGTACGGCGGAAA
GCTGCGGCTGTTTTGACAGCACTAGTGCTGATGTTGGTGGAGTTTTGGGC
GGTGTCTCACTTCCATGCGACATTAGACACATTCAACAAGTTTTTCGGCG
CCATGCACGTGGGATTCGGGTCTGTGTTTGTTCTACTCGGTCTGGGACTT
TTGGTGATGGTGAGCTGCATTGTAGAAGGCGAGGAAGGCGGCGAAGCGCA
ACTGAATGGCGATGGAGCGAGACGCTCTGACAAGCAGTACGTGATACGGT
CTTGGAGCCGGAAGTTGTACGCGTTGTATCAGCTACACCCCATTTTTATG
CGGTCGATGTCGTGGGTGGGAGGTGAGGTGAACGATGGCAACTTTTCTCA
TTCGGTGATACTGGTGAAAGGGCTGATGCTGTATGGTTGTACGTTGGCCT
TCTCAATACCTGTGAGTGCAGTAGAGCAGGTGTTTTTGGAGATGAGAAGT
TTGTTGAAACGCTGGACGAAGGCGGCATCAGCGAAACGAGCCAAAGAGGA
GTAG
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