Ggra11139.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11139.t1
Unique NameGgra11139.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:110969..112105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708954.1
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K11294,ko:K14573,ko:K14789
KEGG Pathwayko03008,ko05130,map03008,map05130
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Evalue3.26e-25
EggNOG OGsKOG0110@1|root,KOG0110@2759|Eukaryota
Descriptionsmall-subunit processome assembly
COG categoryS
BRITEko00000,ko00001,ko03009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11139Ggra11139Gracilaria gracilis GNS1m malegenetig00000110_pilon 110969..112105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11139.t1Ggra11139.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 110969..112105 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11139.t1.start1Ggra11139.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 110969..110971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11139.t1.CDS1Ggra11139.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 110969..111710 +
Ggra11139.t1.CDS2Ggra11139.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 111876..111884 +
Ggra11139.t1.CDS3Ggra11139.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000110_pilon 111958..111969 +
Ggra11139.t1.CDS4Ggra11139.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000110_pilon 112071..112105 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11139.t1.exon1Ggra11139.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 110969..111710 +
Ggra11139.t1.exon2Ggra11139.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 111876..111884 +
Ggra11139.t1.exon3Ggra11139.t1.exon3Gracilaria gracilis GNS1m maleexontig00000110_pilon 111958..111969 +
Ggra11139.t1.exon4Ggra11139.t1.exon4Gracilaria gracilis GNS1m maleexontig00000110_pilon 112071..112105 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11139.t1.intron1Ggra11139.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 111711..111875 +
Ggra11139.t1.intron2Ggra11139.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000110_pilon 111885..111957 +
Ggra11139.t1.intron3Ggra11139.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000110_pilon 111970..112070 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11139.t1.stop1Ggra11139.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 112103..112105 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11139.t1 ID=Ggra11139.t1|Name=Ggra11139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MPPPPSSFAAPPPLTRSAFRSNFSRARRRRALPQCAQPPAVPCLPLTHLP
RRTHVRPRQADVAAVSQDAFLQCVQCLAVYHVEPEELEGVARVVSCSACL
HEWYATEDDLIWGDEQANAALAIAAEQSDGTNPFIAARGVEKKQQNGEDD
GPINVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEM
QSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTGKKTASRSKFKRRDTK
VILRGPIQFPQSNSV*
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spliced messenger RNA

>Ggra11139.t1 ID=Ggra11139.t1|Name=Ggra11139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000110_pilon:110969..112105+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATgccgccgccgccgtcgtcgttcgccgcgccaccgccgcTTACGCGCAG
CGCCTTCCGCTCCAACTTCAGTCGCGCACGACGACGGCGCGCGTTGCCGC
AGTGTGCGCAGCCGCCTGCGGTGCCCTGCTTGCCGCTTACGCATCTGCCG
CGCCGTACTCATGTGAGGCCGCGTCAGGCCGATGTGGCCGCCGTTTCGCA
GGATGCCTTCTTGCAGTGTGTGCAGTGCCTGGCTGTGTACCACGTCGAGC
CAGAGGAGCTGGAGGGCGTTGCGCGAGTCGTTTCGTGTTCGGCTTGTTTG
CATGAGTGGTATGCGACAGAGGATGACCTTATTTGGGGTGATGAGCAGGC
CAATGCCGCTTTGGCGATCGCTGCAGAGCAGAGTGATGGCACAAATCCCT
TTATCGCTGCGAGGGGTGTCGAGAAAAAGCAGCAGAACGGCGAGGACGAC
GGCCCAATTAACGTGTTTGTTGGAAACTTGTCCTTTCGCGCTACGGAAGA
GGACTTGTACCGCGCCTTCTCTGGATACGGGGCTGTGCTCAACTGTGAGC
TGCCGTCCGATTCCGCAGGCCTTCCAAGGGGATACGCCTTTGTTGAAATG
CAAAGTCGTCAAGCGGGAATGAGGGCGATTGAATGCTTGCAGGGAACCAG
CATTGTTGGCAGGGACGTTTCGCTCAGTGAAGCTAAACCAAGACCCCATA
CAGGAAAGAAGACCGCATCTAGGTCGAAGTTCAAAAGAAGGGATACAAAA
GTGATACTACGGGGACCAATTCAATTCCCGCAGAGCAATTCCGTTTAG
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protein sequence of Ggra11139.t1

>Ggra11139.t1 ID=Ggra11139.t1|Name=Ggra11139.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MPPPPSSFAAPPPLTRSAFRSNFSRARRRRALPQCAQPPAVPCLPLTHLP
RRTHVRPRQADVAAVSQDAFLQCVQCLAVYHVEPEELEGVARVVSCSACL
HEWYATEDDLIWGDEQANAALAIAAEQSDGTNPFIAARGVEKKQQNGEDD
GPINVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEM
QSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTGKKTASRSKFKRRDTK
VILRGPIQFPQSNSV*
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mRNA from alignment at tig00000110_pilon:110969..112105+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11139.t1 ID=Ggra11139.t1|Name=Ggra11139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000110_pilon:110969..112105+ (Gracilaria gracilis GNS1m male)
ATgccgccgccgccgtcgtcgttcgccgcgccaccgccgcTTACGCGCAG
CGCCTTCCGCTCCAACTTCAGTCGCGCACGACGACGGCGCGCGTTGCCGC
AGTGTGCGCAGCCGCCTGCGGTGCCCTGCTTGCCGCTTACGCATCTGCCG
CGCCGTACTCATGTGAGGCCGCGTCAGGCCGATGTGGCCGCCGTTTCGCA
GGATGCCTTCTTGCAGTGTGTGCAGTGCCTGGCTGTGTACCACGTCGAGC
CAGAGGAGCTGGAGGGCGTTGCGCGAGTCGTTTCGTGTTCGGCTTGTTTG
CATGAGTGGTATGCGACAGAGGATGACCTTATTTGGGGTGATGAGCAGGC
CAATGCCGCTTTGGCGATCGCTGCAGAGCAGAGTGATGGCACAAATCCCT
TTATCGCTGCGAGGGGTGTCGAGAAAAAGCAGCAGAACGGCGAGGACGAC
GGCCCAATTAACGTGTTTGTTGGAAACTTGTCCTTTCGCGCTACGGAAGA
GGACTTGTACCGCGCCTTCTCTGGATACGGGGCTGTGCTCAACTGTGAGC
TGCCGTCCGATTCCGCAGGCCTTCCAAGGGGATACGCCTTTGTTGAAATG
CAAAGTCGTCAAGCGGGAATGAGGGCGATTGAATGCTTGCAGGGAACCAG
CATTGTTGGCAGGGACGTTTCGCTCAGTGAAGCTAAACCAAGACCCCATA
CAGGAAAGAAGACCGCATCTAGGTCGAAGTTCAAAAGAAGGGGTAGGCCT
AACAATACTCGGGAGGACCAGCAGCGTGCAGCTGATGTCACTGGCTCACA
AACCCCGGACTCCCATCTTTGACTAAATCCATCTCACAATCACTAACTTA
CTTAACGACGGTCAAAACATCAACGCATTGCCTGGCGCGAGTTTACTTTC
TGTTTAGATACAAAAGGTATGGCACGATAGCTTTTCTGTCTCCCATGAGC
TCCTATCTGTGCGACAAGAGTCGTTCGTTCTTGATAAAGTGATACTACGG
GGTAAGTTATTATATATAGCAGTTGTGGACTGCAAGATAGTGAGATGTCT
CGTTAGACTCTTGAGAATAACTCGAGCAATCCTTCTTGTCCGCAATTAAC
AGGACCAATTCAATTCCCGCAGAGCAATTCCGTTTAG
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Coding sequence (CDS) from alignment at tig00000110_pilon:110969..112105+

>Ggra11139.t1 ID=Ggra11139.t1|Name=Ggra11139.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000110_pilon:110969..112105+ (Gracilaria gracilis GNS1m male)
ATgccgccgccgccgtcgtcgttcgccgcgccaccgccgcTTACGCGCAG
CGCCTTCCGCTCCAACTTCAGTCGCGCACGACGACGGCGCGCGTTGCCGC
AGTGTGCGCAGCCGCCTGCGGTGCCCTGCTTGCCGCTTACGCATCTGCCG
CGCCGTACTCATGTGAGGCCGCGTCAGGCCGATGTGGCCGCCGTTTCGCA
GGATGCCTTCTTGCAGTGTGTGCAGTGCCTGGCTGTGTACCACGTCGAGC
CAGAGGAGCTGGAGGGCGTTGCGCGAGTCGTTTCGTGTTCGGCTTGTTTG
CATGAGTGGTATGCGACAGAGGATGACCTTATTTGGGGTGATGAGCAGGC
CAATGCCGCTTTGGCGATCGCTGCAGAGCAGAGTGATGGCACAAATCCCT
TTATCGCTGCGAGGGGTGTCGAGAAAAAGCAGCAGAACGGCGAGGACGAC
GGCCCAATTAACGTGTTTGTTGGAAACTTGTCCTTTCGCGCTACGGAAGA
GGACTTGTACCGCGCCTTCTCTGGATACGGGGCTGTGCTCAACTGTGAGC
TGCCGTCCGATTCCGCAGGCCTTCCAAGGGGATACGCCTTTGTTGAAATG
CAAAGTCGTCAAGCGGGAATGAGGGCGATTGAATGCTTGCAGGGAACCAG
CATTGTTGGCAGGGACGTTTCGCTCAGTGAAGCTAAACCAAGACCCCATA
CAGGAAAGAAGACCGCATCTAGGTCGAAGTTCAAAAGAAGGGATACAAAA
GTGATACTACGGGGACCAATTCAATTCCCGCAGAGCAATTCCGTTTAG
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