Ggra11126.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11126.t1
Unique NameGgra11126.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Homology
BLAST of Ggra11126.t1 vs. uniprot
Match: A0A2V3IDQ0 (Troponin C, isoform 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDQ0_9FLOR)

HSP 1 Score: 163 bits (412), Expect = 3.230e-43
Identity = 117/335 (34.93%), Postives = 162/335 (48.36%), Query Frame = 0
Query:    1 MSDGSPFGKRKSCRGHDARKALILRKSFEVYDRDKSGAIDCEELRSLLRDLGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQWTEFAYTARILYRDEMCSSPVGAARPKVDACEVRGAQSSPWMCRV-------LQENNQQMQKVHSG-------------------AGNTPL------STVFEESEREPEKLLCGSNENGVIGTSTGVSPCRNGFSSPWHVNEHED-ENRFVQSRFSSRETGGEDEVEFSAPITKMATMTLGRSRNINTWTTSRIRSKS---VDNYRCFGYNATLGTPRGRERYRGEGKTCGPRVRSKATARVLWACEQLRTKS 299
            M++G     RK+ R  +  +A ILR++FEVYDRD+SGAID EELR LL DLGWPSDD F+                   FL+WTEFAY +R+LYR+EMC SP   +RP+++ CE++G + S  +          L      +  +H G                     N  L       T  +E+E   E+++  +N  G    +T     R        VNE ++  N  +Q R + RE    +E +F+API KMATM LG  +      TSR RS+S   V    C G          R+R   E    GPRVRSK TA + WACE ++ ++
Sbjct:    1 MNEGVASRHRKAGR-REGHRATILRRAFEVYDRDQSGAIDHEELRKLLEDLGWPSDDVFLXXXXXXXXXXXXXXXXXXXFLKWTEFAYNSRVLYREEMCPSPQSRSRPRIERCEIQGREDSQVLASTDNQELAELWRKRTTLTTLHEGREAQNSCDGLDVDAQSVLKCDNKELYASEEEETDEDEAEAFQEEMMRTANVGGDQSGATRRQRER------MFVNEEQEARNNGLQRRRTQREV---EEDDFAAPIVKMATMALGTDKKAKQLITSRTRSQSPAVVCWKECDG----------RKRVSAERLAMGPRVRSKTTAHMRWACEMIQERT 315          
BLAST of Ggra11126.t1 vs. uniprot
Match: A0A813BC62 (Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BC62_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 1.830e-7
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0
Query:   23 ILRKSFEVYDRDKSGAIDCEELRSLLRDLGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQW 83
             ++  F+++D+D+SG I+  ELRSL   +G    D  ++ AV  LDTD SGE+ F EF++W
Sbjct:   59 FMKSQFDIFDQDQSGYINAAELRSLFTKIGEEITDRQLEEAVRELDTDQSGEVEFFEFVEW 119          
BLAST of Ggra11126.t1 vs. uniprot
Match: calmodulin-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014591631 (calmodulin-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014591631)

HSP 1 Score: 55.8 bits (133), Expect = 4.890e-6
Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 0
Query:    1 MSDGSPFGKRKSCRGHDARKALILRKSFEVYDRDKSGAIDCEELRSLLRDLGWPSDDAFVQRAVNVLDTDNSGEIGFSEFL 81
            M +   F KR         +   LR +F+++D+DKSG ID EELR  L  +G    D  VQ+ +   D +  GEI + EF+
Sbjct:   45 MINFDDFSKRMKVEMESTEEEAELRNAFKLFDKDKSGKIDFEELRVALSSIGESLTDEQVQKMLQEADRNGDGEIDYEEFI 125          
BLAST of Ggra11126.t1 vs. uniprot
Match: A0A6P5A6T5 (Calmodulin n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A6T5_BRABE)

HSP 1 Score: 57.4 bits (137), Expect = 5.480e-6
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0
Query:   10 RKSCRGHDA-----RKALILRKSFEVYDRDKSGAIDCEELRSLLRDLGWPSDDAFVQRAVNVLDTDNSGEIGFSEFL 81
            R+S  G D+      +    R +F+V+DRD+ GAI  +EL S +R LG    +  +Q  +N +DTD +G I FSEFL
Sbjct:   49 RRSSHGADSDRMSEEEIQEWRDAFDVFDRDRDGAISAKELGSAMRSLGMDPSEFEIQELLNEVDTDGTGTIYFSEFL 125          
BLAST of Ggra11126.t1 vs. uniprot
Match: A0A6P8HMJ7 (caltractin-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HMJ7_ACTTE)

HSP 1 Score: 57.8 bits (138), Expect = 5.930e-6
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0
Query:   16 HDARKALILRKSFEVYDRDKSGAIDCEELRSLLRDLGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQW 83
            H+ R   I+   F+ +D D+SG+ID  ELR  +R LG+    A ++  ++ LDTD SGEI F EFL +
Sbjct:   89 HEIRDLRIV---FDTFDTDRSGSIDARELRKAMRTLGFKIPKASLEAMISNLDTDESGEIEFDEFLDF 153          
BLAST of Ggra11126.t1 vs. uniprot
Match: A0A812TQE7 (Calmodulin n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TQE7_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 6.920e-6
Identity = 25/60 (41.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:   24 LRKSFEVYDRDKSGAIDCEELRSLLRDLGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQW 83
            L ++F ++D  + G ++  +L+S+ R LG+PSDDA +QR + ++DTD SG+I F+EF ++
Sbjct:   64 LARAFNLFDSKRKGELEKGDLKSMNRYLGFPSDDADIQRLLKMIDTDGSGKISFTEFQEY 123          
BLAST of Ggra11126.t1 vs. uniprot
Match: A0A7S1AUQ9 (Calmodulin n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AUQ9_NOCSC)

HSP 1 Score: 58.9 bits (141), Expect = 9.670e-6
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 0
Query:   15 GHDARKALILRKSFEVYDRDKSGAIDCEELRSLLRDLGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQW 83
            G   +    L++ F+ +D+DKSG ID  E R LL  LG     A + R  N LD D SGEI FSEF++W
Sbjct:  626 GVSVKTVGTLKRDFDEFDKDKSGFIDKGEFRGLLGKLGEDLSLAELDRVFNRLDLDRSGEIEFSEFVEW 694          
The following BLAST results are available for this feature:
BLAST of Ggra11126.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IDQ03.230e-4334.93Troponin C, isoform 1 n=1 Tax=Gracilariopsis chord... [more]
A0A813BC621.830e-742.62Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A... [more]
calmodulin-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145916314.890e-635.80calmodulin-like n=1 Tax=Pecten maximus TaxID=6579 ... [more]
A0A6P5A6T55.480e-640.26Calmodulin n=5 Tax=Branchiostoma TaxID=7737 RepID=... [more]
A0A6P8HMJ75.930e-642.65caltractin-like n=1 Tax=Actinia tenebrosa TaxID=61... [more]
A0A812TQE76.920e-641.67Calmodulin n=1 Tax=Symbiodinium natans TaxID=87847... [more]
A0A7S1AUQ99.670e-644.93Calmodulin n=1 Tax=Noctiluca scintillans TaxID=296... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 23..51
e-value: 0.0043
score: 26.3
coord: 59..87
e-value: 11.0
score: 9.2
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 24..84
e-value: 8.0E-12
score: 45.4
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 19..54
score: 13.537066
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 55..90
score: 10.691735
IPR002048EF-hand domainCDDcd00051EFhcoord: 24..83
e-value: 3.6826E-17
score: 72.9657
NoneNo IPR availableGENE3D1.10.238.10coord: 16..100
e-value: 7.5E-17
score: 63.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 330..346
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 32..44
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 68..80
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 24..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:74009..75181 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11126.t1Ggra11126.t1Gracilaria gracilis GNS1m malemRNAtig00000110_pilon 74009..75181 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11126.t1 ID=Ggra11126.t1|Name=Ggra11126.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MSDGSPFGKRKSCRGHDARKALILRKSFEVYDRDKSGAIDCEELRSLLRD
LGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQWTEFAYTARILYRDEMCS
SPVGAARPKVDACEVRGAQSSPWMCRVLQENNQQMQKVHSGAGNTPLSTV
FEESEREPEKLLCGSNENGVIGTSTGVSPCRNGFSSPWHVNEHEDENRFV
QSRFSSRETGGEDEVEFSAPITKMATMTLGRSRNINTWTTSRIRSKSVDN
YRCFGYNATLGTPRGRERYRGEGKTCGPRVRSKATARVLWACEQLRTKSI
TGDSEDDEDESSDDDRNASPIVNMEGTRINPETEQKKTEELRSKSRNCRS
RSRRVSCVGEFPNRVEEVPNSRTGESEEDKDQHMRKASSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair